Miyakogusa Predicted Gene

Lj0g3v0362089.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0362089.1 Non Characterized Hit- tr|K4CHM5|K4CHM5_SOLLC
Uncharacterized protein OS=Solanum lycopersicum
GN=Sol,61.25,4e-18,PALP,Tryptophan synthase beta subunit-like
PLP-dependent enzymes superfamily; CYSTEINE SYNTHASE,NULL,CUFF.24944.1
         (79 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g095670.1 | pyridoxal-5'-phosphate-dependent enzyme family...    87   4e-18
Medtr2129s0010.1 | cystathionine beta-synthase | LC | scaffold21...    57   5e-09

>Medtr5g095670.1 | pyridoxal-5'-phosphate-dependent enzyme family
          protein | HC | chr5:41818952-41822663 | 20130731
          Length = 424

 Score = 87.0 bits (214), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 45/70 (64%), Positives = 50/70 (71%), Gaps = 5/70 (7%)

Query: 15 LIVSLVVAYFI-----XXXXXXXXXXXXXGIVEAIGNSPLIRINSLSDATGCQILGKCEF 69
          + VSLVVAYF                   GI++AIGN+PLIRINSLSDATGC+ILGKCEF
Sbjct: 18 IFVSLVVAYFFCDRLCNPSKKKKKKKSKNGIIDAIGNTPLIRINSLSDATGCEILGKCEF 77

Query: 70 LNPGGSVKDR 79
          LNPGGSVKDR
Sbjct: 78 LNPGGSVKDR 87


>Medtr2129s0010.1 | cystathionine beta-synthase | LC |
           scaffold2129:911-58 | 20130731
          Length = 284

 Score = 56.6 bits (135), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 23/37 (62%), Positives = 29/37 (78%)

Query: 39  GIVEAIGNSPLIRINSLSDATGCQILGKCEFLNPGGS 75
           G V+ +G +PLIR+  LS  TGC+ILGK EF+NPGGS
Sbjct: 248 GFVDCVGRTPLIRLAKLSAETGCEILGKAEFMNPGGS 284