Miyakogusa Predicted Gene

Lj0g3v0362089.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0362089.1 Non Chatacterized Hit- tr|K4CHM5|K4CHM5_SOLLC
Uncharacterized protein OS=Solanum lycopersicum
GN=Sol,61.25,4e-18,PALP,Tryptophan synthase beta subunit-like
PLP-dependent enzymes superfamily; CYSTEINE SYNTHASE,NULL,CUFF.24944.1
         (79 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G55880.2 | Symbols:  | Pyridoxal-5'-phosphate-dependent enzym...    84   2e-17
AT1G55880.1 | Symbols:  | Pyridoxal-5'-phosphate-dependent enzym...    83   4e-17

>AT1G55880.2 | Symbols:  | Pyridoxal-5'-phosphate-dependent enzyme
          family protein | chr1:20899619-20901140 REVERSE
          LENGTH=348
          Length = 348

 Score = 84.0 bits (206), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 36/41 (87%), Positives = 41/41 (100%)

Query: 39 GIVEAIGNSPLIRINSLSDATGCQILGKCEFLNPGGSVKDR 79
          G+V+AIGN+PLIRINSLS+ATGC+ILGKCEFLNPGGSVKDR
Sbjct: 43 GLVDAIGNTPLIRINSLSEATGCEILGKCEFLNPGGSVKDR 83


>AT1G55880.1 | Symbols:  | Pyridoxal-5'-phosphate-dependent enzyme
          family protein | chr1:20899292-20901140 REVERSE
          LENGTH=421
          Length = 421

 Score = 82.8 bits (203), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 36/41 (87%), Positives = 41/41 (100%)

Query: 39 GIVEAIGNSPLIRINSLSDATGCQILGKCEFLNPGGSVKDR 79
          G+V+AIGN+PLIRINSLS+ATGC+ILGKCEFLNPGGSVKDR
Sbjct: 43 GLVDAIGNTPLIRINSLSEATGCEILGKCEFLNPGGSVKDR 83