Miyakogusa Predicted Gene
- Lj0g3v0348469.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0348469.1 tr|G7J6N7|G7J6N7_MEDTR Pentatricopeptide
repeat-containing protein OS=Medicago truncatula
GN=MTR_3g0,38.94,3e-18,SUBFAMILY NOT NAMED,NULL; FAMILY NOT
NAMED,NULL; seg,NULL; PPR: pentatricopeptide repeat
domain,Pent,CUFF.23927.1
(258 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G46870.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 304 5e-83
AT1G62350.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 161 4e-40
AT5G09320.1 | Symbols: VPS9B | Vacuolar sorting protein 9 (VPS9)... 79 4e-15
AT1G77340.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 67 1e-11
AT3G27750.1 | Symbols: | FUNCTIONS IN: molecular_function unkno... 60 1e-09
AT1G62670.1 | Symbols: RPF2 | rna processing factor 2 | chr1:232... 56 3e-08
AT1G62910.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 56 3e-08
AT1G63130.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 55 5e-08
AT1G62590.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 55 6e-08
AT5G02860.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 54 9e-08
AT5G48730.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 54 1e-07
AT1G79540.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 54 1e-07
AT1G62930.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 54 1e-07
AT3G16890.1 | Symbols: PPR40 | pentatricopeptide (PPR) domain pr... 53 2e-07
AT5G16640.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 53 2e-07
AT1G74850.1 | Symbols: PTAC2 | plastid transcriptionally active ... 53 2e-07
AT1G63330.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 53 2e-07
AT5G41170.1 | Symbols: | Pentatricopeptide repeat (PPR-like) su... 52 3e-07
AT1G13040.1 | Symbols: | Pentatricopeptide repeat (PPR-like) su... 52 3e-07
AT3G06920.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 52 3e-07
AT1G63070.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 52 4e-07
AT4G19890.1 | Symbols: | Pentatricopeptide repeat (PPR-like) su... 52 5e-07
AT1G63080.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 52 5e-07
AT1G05670.2 | Symbols: | Pentatricopeptide repeat (PPR-like) su... 51 8e-07
AT1G05670.1 | Symbols: | Pentatricopeptide repeat (PPR-like) su... 51 8e-07
AT4G11690.1 | Symbols: | Pentatricopeptide repeat (PPR-like) su... 50 1e-06
AT1G62720.1 | Symbols: | Pentatricopeptide repeat (PPR-like) su... 50 1e-06
AT5G39710.1 | Symbols: EMB2745 | Tetratricopeptide repeat (TPR)-... 50 1e-06
AT5G12100.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 50 1e-06
AT5G01110.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 50 2e-06
AT5G61400.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 50 2e-06
AT1G22960.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 49 2e-06
AT2G41720.1 | Symbols: EMB2654 | Tetratricopeptide repeat (TPR)-... 49 3e-06
AT2G06000.2 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 49 3e-06
AT2G06000.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 49 3e-06
AT1G79490.1 | Symbols: EMB2217 | Pentatricopeptide repeat (PPR) ... 49 4e-06
AT3G09060.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 49 5e-06
AT3G18110.1 | Symbols: EMB1270 | Pentatricopeptide repeat (PPR) ... 48 7e-06
AT1G77360.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 48 8e-06
AT5G06400.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 47 9e-06
AT4G20740.1 | Symbols: | Pentatricopeptide repeat (PPR-like) su... 47 1e-05
AT2G16880.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 47 1e-05
>AT3G46870.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr3:17263011-17264022 FORWARD
LENGTH=257
Length = 257
Score = 304 bits (778), Expect = 5e-83, Method: Compositional matrix adjust.
Identities = 141/199 (70%), Positives = 168/199 (84%)
Query: 58 YHDGRPRGPLWRGKKLIGKEALFVISGLKRFKDDDDVLHKFIKTHVLRLLKVDIIAVLTE 117
+HDGRPRGPLWRGKKLIGKEALFVI GLKR K+DD+ L KFIKTHV RLLK+D++AV+ E
Sbjct: 57 FHDGRPRGPLWRGKKLIGKEALFVILGLKRLKEDDEKLDKFIKTHVFRLLKLDMLAVIGE 116
Query: 118 LERQQEVSLAFKVFKVMQKQDWYKPDAFLYKDLIIALARSKKMDEVLELWESMRKENLFP 177
LERQ+E +LA K+F+V+QKQ+WY+PD F+YKDLI++LA+SK+MDE + LWE M+KENLFP
Sbjct: 117 LERQEETALAIKMFEVIQKQEWYQPDVFMYKDLIVSLAKSKRMDEAMALWEKMKKENLFP 176
Query: 178 DSQTYTEVIRGFLNYGSPADAMNIYEDMKNSPDPPEELPFRIXXXXXXXXXXXRNKVKQD 237
DSQTYTEVIRGFL G PADAMN+YEDM SPDPPEELPFR+ RNKVK+D
Sbjct: 177 DSQTYTEVIRGFLRDGCPADAMNVYEDMLKSPDPPEELPFRVLLKGLLPHPLLRNKVKKD 236
Query: 238 FEEIFPDSSIYDPPQEIFG 256
FEE+FP+ YDPP+EIFG
Sbjct: 237 FEELFPEKHAYDPPEEIFG 255
>AT1G62350.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr1:23056653-23057935 FORWARD
LENGTH=196
Length = 196
Score = 161 bits (407), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 76/181 (41%), Positives = 118/181 (65%)
Query: 74 IGKEALFVISGLKRFKDDDDVLHKFIKTHVLRLLKVDIIAVLTELERQQEVSLAFKVFKV 133
+ KE L LKR + L +FI +HV RLLK D+++VL E +RQ +V L K+++V
Sbjct: 1 MSKEGLIAAKELKRLQTQSVRLDRFIGSHVSRLLKSDLVSVLAEFQRQNQVFLCMKLYEV 60
Query: 134 MQKQDWYKPDAFLYKDLIIALARSKKMDEVLELWESMRKENLFPDSQTYTEVIRGFLNYG 193
++++ WY+PD F Y+D+++ LAR+KK+DE ++WE ++KE + D T+ +++RGFL+
Sbjct: 61 VRREIWYRPDMFFYRDMLMMLARNKKVDETKKVWEDLKKEEVLFDQHTFGDLVRGFLDNE 120
Query: 194 SPADAMNIYEDMKNSPDPPEELPFRIXXXXXXXXXXXRNKVKQDFEEIFPDSSIYDPPQE 253
P +AM +Y +M+ SPD P LPFR+ R KVK DF E+FP +YDPP++
Sbjct: 121 LPLEAMRLYGEMRESPDRPLSLPFRVILKGLVPYPELREKVKDDFLELFPGMIVYDPPED 180
Query: 254 I 254
I
Sbjct: 181 I 181
>AT5G09320.1 | Symbols: VPS9B | Vacuolar sorting protein 9 (VPS9)
domain | chr5:2889007-2892016 REVERSE LENGTH=712
Length = 712
Score = 78.6 bits (192), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 57/192 (29%), Positives = 93/192 (48%), Gaps = 19/192 (9%)
Query: 44 VAVFDRKYVWGFREYHDGRPRGPLWRGKKLIGKEALFVISGLKRFKDDDDVLH------- 96
+ + R V R+ + R PL RG+ ++ EA+ + LKR
Sbjct: 478 IQILQRAMVIKMRDR--SKNRKPLQRGR-MLSIEAIQAVQALKRANPLLPPPPVPSTSTT 534
Query: 97 --------KFIKTHVLRLLKVDIIAVLTELERQQEVSLAFKVFKVMQKQDWYKPDAFLYK 148
+ I + RLLK D++AVL EL RQ E SLA KVF+ ++K+ WYKP +Y
Sbjct: 535 SSSSALLDRVIISKFRRLLKFDMVAVLRELLRQNECSLALKVFEEIRKEYWYKPQVRMYT 594
Query: 149 DLIIALARSKKMDEVLELWESMRKE-NLFPDSQTYTEVIRGFLNYGSPADAMNIYEDMKN 207
D+I +A + M+EV L+ +M+ E L + + + ++ LN+ M+ Y M++
Sbjct: 595 DMITVMADNSLMEEVNYLYSAMKSEKGLMAEIEWFNTLLTILLNHKLFDLVMDCYAFMQS 654
Query: 208 SPDPPEELPFRI 219
P+ FR+
Sbjct: 655 IGYEPDRASFRV 666
>AT1G77340.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr1:29068620-29069828 REVERSE
LENGTH=402
Length = 402
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 58/105 (55%), Gaps = 1/105 (0%)
Query: 115 LTELERQQEVSLAFKVFKVMQKQDWYKPDAFLYKDLIIALARSKKMDEVLELWESMRKEN 174
+T R++EV AFKVFK M + ++ + Y LI L +KK+DE L L M+ +N
Sbjct: 197 ITGHCRRKEVDAAFKVFKEMTQNGCHRNEVS-YTQLIYGLFEAKKIDEALSLLVKMKDDN 255
Query: 175 LFPDSQTYTEVIRGFLNYGSPADAMNIYEDMKNSPDPPEELPFRI 219
P+ +TYT +I G ++AMN+++ M S P++ + +
Sbjct: 256 CCPNVRTYTVLIDALCGSGQKSEAMNLFKQMSESGIKPDDCMYTV 300
>AT3G27750.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 16 plant structures;
EXPRESSED DURING: 12 growth stages; BEST Arabidopsis
thaliana protein match is: Vacuolar sorting protein 9
(VPS9) domain (TAIR:AT5G09320.1); Has 106 Blast hits to
106 proteins in 16 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 4; Plants - 102; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink). |
chr3:10284820-10285488 FORWARD LENGTH=222
Length = 222
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 74/146 (50%), Gaps = 5/146 (3%)
Query: 64 RGPLWRGKKLIGKEALFVISGLKRFKDDDDVLHKFIKTHVLRLLKVDIIAVLTELERQQE 123
RGPL +G+ ++ EA+ I LKR L ++ + RL+K D+I+VL EL RQ
Sbjct: 39 RGPLLKGR-ILSTEAIQSIQSLKRAHRTGVSLSLTLRP-LRRLIKSDLISVLRELLRQDY 96
Query: 124 VSLAFKVFKVMQKQDWYKP-DAFLYKDLIIALARSKKMDEVLELWESMRKENLFPDSQTY 182
+LA V ++ + Y P D LY D++ AL R+K+ DE+ L + + D +
Sbjct: 97 CTLAVHVLSTLRTE--YPPLDLVLYADIVNALTRNKEFDEIDRLIGEIDGIDQRSDDKAL 154
Query: 183 TEVIRGFLNYGSPADAMNIYEDMKNS 208
++IR + + +Y M+ S
Sbjct: 155 AKLIRAVVGAERRESVVRVYTLMRES 180
>AT1G62670.1 | Symbols: RPF2 | rna processing factor 2 |
chr1:23204773-23206665 REVERSE LENGTH=630
Length = 630
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 51/104 (49%), Gaps = 1/104 (0%)
Query: 114 VLTELERQQEVSLAFKVFKVMQKQDWYKPDAFLYKDLIIALARSKKMDEVLELWESMRKE 173
V+ L ++ + LAF + M+ Q +P +Y +I L + K MD+ L L++ M +
Sbjct: 227 VVNGLCKRGDTDLAFNLLNKME-QGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETK 285
Query: 174 NLFPDSQTYTEVIRGFLNYGSPADAMNIYEDMKNSPDPPEELPF 217
+ P+ TY+ +I NYG +DA + DM P+ F
Sbjct: 286 GIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTF 329
>AT1G62910.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr1:23299060-23300958 FORWARD
LENGTH=632
Length = 632
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 51/105 (48%), Gaps = 1/105 (0%)
Query: 113 AVLTELERQQEVSLAFKVFKVMQKQDWYKPDAFLYKDLIIALARSKKMDEVLELWESMRK 172
V+ L ++ ++ LA + K M+K + D +Y +I L + K MD+ L L+ M
Sbjct: 228 TVVNGLCKRGDIDLALSLLKKMEKGK-IEADVVIYNTIIDGLCKYKHMDDALNLFTEMDN 286
Query: 173 ENLFPDSQTYTEVIRGFLNYGSPADAMNIYEDMKNSPDPPEELPF 217
+ + PD TY+ +I NYG +DA + DM P + F
Sbjct: 287 KGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMIERKINPNVVTF 331
>AT1G63130.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr1:23412854-23414746 FORWARD
LENGTH=630
Length = 630
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 51/104 (49%), Gaps = 1/104 (0%)
Query: 114 VLTELERQQEVSLAFKVFKVMQKQDWYKPDAFLYKDLIIALARSKKMDEVLELWESMRKE 173
V+ L ++ ++ LA + K M+ Q +P +Y +I AL K +++ L L+ M +
Sbjct: 227 VVNGLCKRGDIDLALSLLKKME-QGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNK 285
Query: 174 NLFPDSQTYTEVIRGFLNYGSPADAMNIYEDMKNSPDPPEELPF 217
+ P+ TY +IR NYG +DA + DM P + F
Sbjct: 286 GIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTF 329
>AT1G62590.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr1:23177294-23179198 REVERSE LENGTH=634
Length = 634
Score = 54.7 bits (130), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 50/93 (53%), Gaps = 1/93 (1%)
Query: 127 AFKVFKVMQKQDWYKPDAFLYKDLIIALARSKKMDEVLELWESMRKENLFPDSQTYTEVI 186
A ++F+ M +D + PD Y LI +SK++++ EL+ M L D+ TYT +I
Sbjct: 384 AKQMFEFMVSKDCF-PDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLI 442
Query: 187 RGFLNYGSPADAMNIYEDMKNSPDPPEELPFRI 219
+G + G +A +++ M + PP+ + + I
Sbjct: 443 QGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSI 475
>AT5G02860.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr5:654102-656561 FORWARD
LENGTH=819
Length = 819
Score = 54.3 bits (129), Expect = 9e-08, Method: Composition-based stats.
Identities = 36/110 (32%), Positives = 51/110 (46%), Gaps = 1/110 (0%)
Query: 108 KVDIIAVLTELERQQEVSLAFKVFKVMQKQDWYKPDAFLYKDLIIALARSKKMDEVLELW 167
KV A+L + A KV M + + P Y LI A AR +DE +EL
Sbjct: 314 KVTYNALLDVYGKSHRPKEAMKVLNEMV-LNGFSPSIVTYNSLISAYARDGMLDEAMELK 372
Query: 168 ESMRKENLFPDSQTYTEVIRGFLNYGSPADAMNIYEDMKNSPDPPEELPF 217
M ++ PD TYT ++ GF G AM+I+E+M+N+ P F
Sbjct: 373 NQMAEKGTKPDVFTYTTLLSGFERAGKVESAMSIFEEMRNAGCKPNICTF 422
>AT5G48730.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr5:19763152-19765136 FORWARD
LENGTH=508
Length = 508
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 48/84 (57%)
Query: 127 AFKVFKVMQKQDWYKPDAFLYKDLIIALARSKKMDEVLELWESMRKENLFPDSQTYTEVI 186
A +VF+++++Q WYKP+ +Y LI+ L + K+ ++ EL++ M E + + YT ++
Sbjct: 133 AIQVFELLREQLWYKPNVGIYVKLIVMLGKCKQPEKAHELFQEMINEGCVVNHEVYTALV 192
Query: 187 RGFLNYGSPADAMNIYEDMKNSPD 210
+ G A + E MK+S +
Sbjct: 193 SAYSRSGRFDAAFTLLERMKSSHN 216
>AT1G79540.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr1:29920334-29922676 REVERSE
LENGTH=780
Length = 780
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 65/132 (49%), Gaps = 6/132 (4%)
Query: 113 AVLTELERQQEVSLAFKVFKVMQKQDWYKPDAFLYKDLIIALARSKKMDEVLELWESMRK 172
+++ L R + + AF+++ M K++ KPD LY LI L+++ K+++ L+L SM
Sbjct: 308 SLIDGLFRARRYTQAFELYANMLKKN-IKPDIILYTILIQGLSKAGKIEDALKLLSSMPS 366
Query: 173 ENLFPDSQTYTEVIRGFLNYGSPADAMNIYEDMKNSPDPPEELPFRIXXXXXXXXXXXRN 232
+ + PD+ Y VI+ G + ++ +M + P+ I RN
Sbjct: 367 KGISPDTYCYNAVIKALCGRGLLEEGRSLQLEMSETESFPDACTHTI-----LICSMCRN 421
Query: 233 KVKQDFEEIFPD 244
+ ++ EEIF +
Sbjct: 422 GLVREAEEIFTE 433
>AT1G62930.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr1:23306534-23308423 FORWARD
LENGTH=629
Length = 629
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 51/105 (48%), Gaps = 1/105 (0%)
Query: 113 AVLTELERQQEVSLAFKVFKVMQKQDWYKPDAFLYKDLIIALARSKKMDEVLELWESMRK 172
V+ L ++ ++ LA + K M+K + D +Y +I AL K +++ L L+ M
Sbjct: 225 TVVNGLCKRGDIDLALSLLKKMEKGKI-EADVVIYTTIIDALCNYKNVNDALNLFTEMDN 283
Query: 173 ENLFPDSQTYTEVIRGFLNYGSPADAMNIYEDMKNSPDPPEELPF 217
+ + P+ TY +IR NYG +DA + DM P + F
Sbjct: 284 KGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTF 328
>AT3G16890.1 | Symbols: PPR40 | pentatricopeptide (PPR) domain
protein 40 | chr3:5768401-5770380 REVERSE LENGTH=659
Length = 659
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 52/106 (49%), Gaps = 1/106 (0%)
Query: 113 AVLTELERQQEVSLAFKVFKVMQKQDWYKPDAFLYKDLIIALARSKKMDEVLELWESMRK 172
AV+ L + + LA+ F+ M + D KPD F Y LI + + +DE + L + M +
Sbjct: 185 AVIDALVKSNSLDLAYLKFQQM-RSDGCKPDRFTYNILIHGVCKKGVVDEAIRLVKQMEQ 243
Query: 173 ENLFPDSQTYTEVIRGFLNYGSPADAMNIYEDMKNSPDPPEELPFR 218
E P+ TYT +I GFL G +A+ E M+ P E R
Sbjct: 244 EGNRPNVFTYTILIDGFLIAGRVDEALKQLEMMRVRKLNPNEATIR 289
>AT5G16640.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr5:5461031-5462545 FORWARD
LENGTH=504
Length = 504
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 48/105 (45%), Gaps = 1/105 (0%)
Query: 113 AVLTELERQQEVSLAFKVFKVMQKQDWYKPDAFLYKDLIIALARSKKMDEVLELWESMRK 172
++L R V A +F M YKP+ +Y +I L +SK++D L+L M K
Sbjct: 156 SLLNGFCRGDRVYDALYMFDQMVGMG-YKPNVVIYNTIIDGLCKSKQVDNALDLLNRMEK 214
Query: 173 ENLFPDSQTYTEVIRGFLNYGSPADAMNIYEDMKNSPDPPEELPF 217
+ + PD TY +I G + G +DA + M P+ F
Sbjct: 215 DGIGPDVVTYNSLISGLCSSGRWSDATRMVSCMTKREIYPDVFTF 259
>AT1G74850.1 | Symbols: PTAC2 | plastid transcriptionally active 2 |
chr1:28119237-28122314 REVERSE LENGTH=862
Length = 862
Score = 52.8 bits (125), Expect = 2e-07, Method: Composition-based stats.
Identities = 28/108 (25%), Positives = 52/108 (48%)
Query: 110 DIIAVLTELERQQEVSLAFKVFKVMQKQDWYKPDAFLYKDLIIALARSKKMDEVLELWES 169
D V E + + + ++FK MQ+Q W KP+ +Y +I L R +D+ LE+++
Sbjct: 107 DFALVFKEFAGRGDWQRSLRLFKYMQRQIWCKPNEHIYTIMISLLGREGLLDKCLEVFDE 166
Query: 170 MRKENLFPDSQTYTEVIRGFLNYGSPADAMNIYEDMKNSPDPPEELPF 217
M + + +YT +I + G ++ + + MKN P L +
Sbjct: 167 MPSQGVSRSVFSYTALINAYGRNGRYETSLELLDRMKNEKISPSILTY 214
>AT1G63330.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr1:23489840-23491519 FORWARD
LENGTH=559
Length = 559
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 50/93 (53%), Gaps = 1/93 (1%)
Query: 127 AFKVFKVMQKQDWYKPDAFLYKDLIIALARSKKMDEVLELWESMRKENLFPDSQTYTEVI 186
A ++F+ M +D + PD Y LI +SK++++ EL+ M L D+ TYT +I
Sbjct: 309 AKQMFEFMVSKDCF-PDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLI 367
Query: 187 RGFLNYGSPADAMNIYEDMKNSPDPPEELPFRI 219
+G + G +A +++ M + PP+ + + I
Sbjct: 368 QGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSI 400
>AT5G41170.1 | Symbols: | Pentatricopeptide repeat (PPR-like)
superfamily protein | chr5:16478860-16480443 REVERSE
LENGTH=527
Length = 527
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 47/87 (54%), Gaps = 1/87 (1%)
Query: 127 AFKVFKVMQKQDWYKPDAFLYKDLIIALARSKKMDEVLELWESMRKENLFPDSQTYTEVI 186
A ++F +M+ + + PD Y LI + KK+D+ ++++ M ++ L ++ TYT +I
Sbjct: 301 ARQMFYLMETKGCF-PDVVAYTSLINGFCKCKKVDDAMKIFYEMSQKGLTGNTITYTTLI 359
Query: 187 RGFLNYGSPADAMNIYEDMKNSPDPPE 213
+GF G P A ++ M + PP
Sbjct: 360 QGFGQVGKPNVAQEVFSHMVSRGVPPN 386
>AT1G13040.1 | Symbols: | Pentatricopeptide repeat (PPR-like)
superfamily protein | chr1:4447647-4449200 FORWARD
LENGTH=517
Length = 517
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 53/110 (48%), Gaps = 1/110 (0%)
Query: 109 VDIIAVLTELERQQEVSLAFKVFKVMQKQDWYKPDAFLYKDLIIALARSKKMDEVLELWE 168
V +++ R+ S+A K+ M + PD Y ++ L +S +D+ ++
Sbjct: 361 VTYTSLIKAFLREGNSSVAKKLLDQMTELGL-SPDRIFYTTILDHLCKSGNVDKAYGVFN 419
Query: 169 SMRKENLFPDSQTYTEVIRGFLNYGSPADAMNIYEDMKNSPDPPEELPFR 218
M + + PD+ +Y +I G G +A+ ++EDMK P+EL F+
Sbjct: 420 DMIEHEITPDAISYNSLISGLCRSGRVTEAIKLFEDMKGKECCPDELTFK 469
>AT3G06920.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr3:2181717-2184449 FORWARD
LENGTH=871
Length = 871
Score = 52.4 bits (124), Expect = 3e-07, Method: Composition-based stats.
Identities = 33/104 (31%), Positives = 53/104 (50%), Gaps = 2/104 (1%)
Query: 114 VLTELERQQEVSLAFKVFKVMQKQDWYKPDAFLYKDLIIALARSKKMDEVLELWESMRKE 173
+LT L + +V A KVF+ M+K P+ Y LI L R+ K+D EL +SM+K
Sbjct: 349 ILTCLRKMGKVDEALKVFEEMKKDA--APNLSTYNILIDMLCRAGKLDTAFELRDSMQKA 406
Query: 174 NLFPDSQTYTEVIRGFLNYGSPADAMNIYEDMKNSPDPPEELPF 217
LFP+ +T ++ +A ++E+M P+E+ F
Sbjct: 407 GLFPNVRTVNIMVDRLCKSQKLDEACAMFEEMDYKVCTPDEITF 450
>AT1G63070.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr1:23385324-23387167 REVERSE LENGTH=590
Length = 590
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 51/101 (50%), Gaps = 4/101 (3%)
Query: 113 AVLTELERQQEVSLAFKVFKVMQKQDWYKPDAFLYKDLIIALARSKKMDEVLELWESMRK 172
AV+ L ++ E LA + M+K + D +Y +I L + K MD+ +L+ M
Sbjct: 220 AVINGLCKRGEPDLALNLLNKMEKGK-IEADVVIYNTIIDGLCKYKHMDDAFDLFNKMET 278
Query: 173 ENLFPDSQTYTEVIRGFLNYGSPADAMNIYEDM--KN-SPD 210
+ + PD TY +I NYG +DA + DM KN +PD
Sbjct: 279 KGIKPDVFTYNPLISCLCNYGRWSDASRLLSDMLEKNINPD 319
>AT4G19890.1 | Symbols: | Pentatricopeptide repeat (PPR-like)
superfamily protein | chr4:10786948-10789053 REVERSE
LENGTH=701
Length = 701
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 3/81 (3%)
Query: 127 AFKVFKVMQKQDWYKPDAFLYKDLIIALARSKKMDEVLELWESMRKENLFPDSQTYTEVI 186
AF++F + + D YKP+ Y +I + K++ L+ M+++ LFP+ TYT +I
Sbjct: 341 AFRLFLKLVRSDTYKPNVHTYTSMIGGYCKEDKLNRAEMLFSRMKEQGLFPNVNTYTTLI 400
Query: 187 RGFLNYGSPADA---MNIYED 204
G GS A MN+ D
Sbjct: 401 NGHCKAGSFGRAYELMNLMGD 421
>AT1G63080.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr1:23388884-23390728 REVERSE
LENGTH=614
Length = 614
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 51/106 (48%), Gaps = 1/106 (0%)
Query: 113 AVLTELERQQEVSLAFKVFKVMQKQDWYKPDAFLYKDLIIALARSKKMDEVLELWESMRK 172
AV+ L ++ E LA + M+K + D +Y +I +L + + +D+ L L+ M
Sbjct: 210 AVINGLCKRGEPDLALNLLNKMEKGKI-EADVVIYSTVIDSLCKYRHVDDALNLFTEMDN 268
Query: 173 ENLFPDSQTYTEVIRGFLNYGSPADAMNIYEDMKNSPDPPEELPFR 218
+ + PD TY+ +I NYG +DA + DM P + F
Sbjct: 269 KGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMLERKINPNVVTFN 314
>AT1G05670.2 | Symbols: | Pentatricopeptide repeat (PPR-like)
superfamily protein | chr1:1698574-1700799 REVERSE
LENGTH=741
Length = 741
Score = 50.8 bits (120), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 64/124 (51%), Gaps = 9/124 (7%)
Query: 102 HVLRLLKV-----DIIA---VLTELERQQEVSLAFKVFKVMQKQDWYKPDAFLYKDLIIA 153
H+L L+++ D+I+ V+ R E+ +K+ +VM+++ KP++++Y +I
Sbjct: 267 HLLLLMELKGYTPDVISYSTVVNGYCRFGELDKVWKLIEVMKRKG-LKPNSYIYGSIIGL 325
Query: 154 LARSKKMDEVLELWESMRKENLFPDSQTYTEVIRGFLNYGSPADAMNIYEDMKNSPDPPE 213
L R K+ E E + M ++ + PD+ YT +I GF G A + +M + P+
Sbjct: 326 LCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPD 385
Query: 214 ELPF 217
L +
Sbjct: 386 VLTY 389
>AT1G05670.1 | Symbols: | Pentatricopeptide repeat (PPR-like)
superfamily protein | chr1:1698574-1700799 REVERSE
LENGTH=741
Length = 741
Score = 50.8 bits (120), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 64/124 (51%), Gaps = 9/124 (7%)
Query: 102 HVLRLLKV-----DIIA---VLTELERQQEVSLAFKVFKVMQKQDWYKPDAFLYKDLIIA 153
H+L L+++ D+I+ V+ R E+ +K+ +VM+++ KP++++Y +I
Sbjct: 267 HLLLLMELKGYTPDVISYSTVVNGYCRFGELDKVWKLIEVMKRKG-LKPNSYIYGSIIGL 325
Query: 154 LARSKKMDEVLELWESMRKENLFPDSQTYTEVIRGFLNYGSPADAMNIYEDMKNSPDPPE 213
L R K+ E E + M ++ + PD+ YT +I GF G A + +M + P+
Sbjct: 326 LCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPD 385
Query: 214 ELPF 217
L +
Sbjct: 386 VLTY 389
>AT4G11690.1 | Symbols: | Pentatricopeptide repeat (PPR-like)
superfamily protein | chr4:7056254-7057954 FORWARD
LENGTH=566
Length = 566
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 50/99 (50%), Gaps = 1/99 (1%)
Query: 120 RQQEVSLAFKVFKVMQKQDWYKPDAFLYKDLIIALARSKKMDEVLELWESMRKENLFPDS 179
R+ + S A K+ K M+++ KP Y LI ARS M++ ++L SM + L PD
Sbjct: 385 RKGDTSGAAKMVKEMEERGI-KPSKVTYTILIDTFARSDNMEKAIQLRLSMEELGLVPDV 443
Query: 180 QTYTEVIRGFLNYGSPADAMNIYEDMKNSPDPPEELPFR 218
TY+ +I GF G +A +++ M P E+ +
Sbjct: 444 HTYSVLIHGFCIKGQMNEASRLFKSMVEKNCEPNEVIYN 482
>AT1G62720.1 | Symbols: | Pentatricopeptide repeat (PPR-like)
superfamily protein | chr1:23227574-23229031 FORWARD
LENGTH=485
Length = 485
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 36/69 (52%)
Query: 142 PDAFLYKDLIIALARSKKMDEVLELWESMRKENLFPDSQTYTEVIRGFLNYGSPADAMNI 201
PD Y LI +SK++DE +L+ M + L D+ TY +I+G+ G P A I
Sbjct: 312 PDVVTYNTLINGFCKSKRVDEGTKLFREMAQRGLVGDTITYNTIIQGYFQAGRPDAAQEI 371
Query: 202 YEDMKNSPD 210
+ M + P+
Sbjct: 372 FSRMDSRPN 380
>AT5G39710.1 | Symbols: EMB2745 | Tetratricopeptide repeat
(TPR)-like superfamily protein | chr5:15895729-15897972
FORWARD LENGTH=747
Length = 747
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 42/82 (51%)
Query: 136 KQDWYKPDAFLYKDLIIALARSKKMDEVLELWESMRKENLFPDSQTYTEVIRGFLNYGSP 195
K+ PD Y ++ RS +DE L + M ++ + PD+ TY+ +I+GF
Sbjct: 442 KEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRT 501
Query: 196 ADAMNIYEDMKNSPDPPEELPF 217
+A ++YE+M PP+E +
Sbjct: 502 KEACDLYEEMLRVGLPPDEFTY 523
>AT5G12100.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr5:3911388-3913838 FORWARD LENGTH=816
Length = 816
Score = 50.4 bits (119), Expect = 1e-06, Method: Composition-based stats.
Identities = 28/95 (29%), Positives = 45/95 (47%), Gaps = 1/95 (1%)
Query: 123 EVSLAFKVFKVMQKQDWYKPDAFLYKDLIIALARSKKMDEVLELWESMRKENLFPDSQTY 182
+V ++F M K D P F+Y LI L + K+M++ +L++ M L P TY
Sbjct: 194 DVGKGLELFNRM-KHDRIYPSVFIYNVLIDGLCKGKRMNDAEQLFDEMLARRLLPSLITY 252
Query: 183 TEVIRGFLNYGSPADAMNIYEDMKNSPDPPEELPF 217
+I G+ G+P + + E MK P + F
Sbjct: 253 NTLIDGYCKAGNPEKSFKVRERMKADHIEPSLITF 287
>AT5G01110.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr5:42114-44303 REVERSE
LENGTH=729
Length = 729
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 49/95 (51%), Gaps = 4/95 (4%)
Query: 120 RQQEVSLAFKVFKVMQK-QDWYKPDAFLYKDLIIALARSKKMDEVLELWESMRKENLFPD 178
R++ +S AF + K M++ Q PD F Y ++ R +M E + M + + PD
Sbjct: 632 REENMSKAFGLVKKMEEEQGGLVPDVFTYNSILHGFCRQNQMKEAEVVLRKMIERGVNPD 691
Query: 179 SQTYTEVIRGFLNYGSPADAMNIYEDMKN---SPD 210
TYT +I GF++ + +A I+++M SPD
Sbjct: 692 RSTYTCMINGFVSQDNLTEAFRIHDEMLQRGFSPD 726
>AT5G61400.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr5:24681550-24683514 FORWARD
LENGTH=654
Length = 654
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 53/110 (48%), Gaps = 15/110 (13%)
Query: 123 EVSLAFKVFKVMQKQDWY---------------KPDAFLYKDLIIALARSKKMDEVLELW 167
+V + F +F+ KQ Y KP+ ++Y I+ L R KM+E +++
Sbjct: 198 DVHIYFVLFQCCFKQGLYSKKEKLLDEMTSLGIKPNVYIYTIYILDLCRDNKMEEAEKMF 257
Query: 168 ESMRKENLFPDSQTYTEVIRGFLNYGSPADAMNIYEDMKNSPDPPEELPF 217
E M+K + P+ TY+ +I G+ G+ A +Y+++ + P + F
Sbjct: 258 ELMKKHGVLPNLYTYSAMIDGYCKTGNVRQAYGLYKEILVAELLPNVVVF 307
>AT1G22960.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr1:8128086-8130242 REVERSE
LENGTH=718
Length = 718
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 41/79 (51%)
Query: 127 AFKVFKVMQKQDWYKPDAFLYKDLIIALARSKKMDEVLELWESMRKENLFPDSQTYTEVI 186
AF++ + M D + PD +Y I L + + + +E + + L PD TYT VI
Sbjct: 498 AFRLHEEMVATDHHAPDLTIYNVRIDGLCKVGNLVKAIEFQRKIFRVGLVPDHVTYTTVI 557
Query: 187 RGFLNYGSPADAMNIYEDM 205
RG+L G A N+Y++M
Sbjct: 558 RGYLENGQFKMARNLYDEM 576
>AT2G41720.1 | Symbols: EMB2654 | Tetratricopeptide repeat
(TPR)-like superfamily protein | chr2:17403744-17407127
REVERSE LENGTH=822
Length = 822
Score = 49.3 bits (116), Expect = 3e-06, Method: Composition-based stats.
Identities = 36/131 (27%), Positives = 63/131 (48%), Gaps = 4/131 (3%)
Query: 82 ISGLKRFKDDDDVLHKFIKTHVLRLLKVDIIAVLTELERQQEVSLAFKVFKVMQKQDWYK 141
+ L R+++ D VL+ ++ R + + ++ EL R+ + L VFK M+ Q Y
Sbjct: 85 LMALNRWEEVDGVLNSWVG----RFARKNFPVLIRELSRRGCIELCVNVFKWMKIQKNYC 140
Query: 142 PDAFLYKDLIIALARSKKMDEVLELWESMRKENLFPDSQTYTEVIRGFLNYGSPADAMNI 201
+Y +I AR +D+ L+ M+K + PD++TY +I G AMN+
Sbjct: 141 ARNDIYNMMIRLHARHNWVDQARGLFFEMQKWSCKPDAETYDALINAHGRAGQWRWAMNL 200
Query: 202 YEDMKNSPDPP 212
+DM + P
Sbjct: 201 MDDMLRAAIAP 211
>AT2G06000.2 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr2:2328000-2329610 REVERSE
LENGTH=536
Length = 536
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 50/100 (50%), Gaps = 1/100 (1%)
Query: 120 RQQEVSLAFKVFKVMQKQDWYKPDAFLYKDLIIALARSKKMDEVLELWESMRKENLFPDS 179
R +VS F++++ M + + P+AF Y LI AL ++ + EL + +++ P
Sbjct: 359 RVGQVSQGFRLWEEMNARGMF-PNAFTYSILINALCNENRLLKARELLGQLASKDIIPQP 417
Query: 180 QTYTEVIRGFLNYGSPADAMNIYEDMKNSPDPPEELPFRI 219
Y VI GF G +A I E+M+ P+++ F I
Sbjct: 418 FMYNPVIDGFCKAGKVNEANVIVEEMEKKKCKPDKITFTI 457
>AT2G06000.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr2:2328000-2329610 REVERSE
LENGTH=536
Length = 536
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 50/100 (50%), Gaps = 1/100 (1%)
Query: 120 RQQEVSLAFKVFKVMQKQDWYKPDAFLYKDLIIALARSKKMDEVLELWESMRKENLFPDS 179
R +VS F++++ M + + P+AF Y LI AL ++ + EL + +++ P
Sbjct: 359 RVGQVSQGFRLWEEMNARGMF-PNAFTYSILINALCNENRLLKARELLGQLASKDIIPQP 417
Query: 180 QTYTEVIRGFLNYGSPADAMNIYEDMKNSPDPPEELPFRI 219
Y VI GF G +A I E+M+ P+++ F I
Sbjct: 418 FMYNPVIDGFCKAGKVNEANVIVEEMEKKKCKPDKITFTI 457
>AT1G79490.1 | Symbols: EMB2217 | Pentatricopeptide repeat (PPR)
superfamily protein | chr1:29900617-29903127 FORWARD
LENGTH=836
Length = 836
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 52/102 (50%), Gaps = 4/102 (3%)
Query: 113 AVLTELERQQEVSLAFKVFKVMQKQDWYKPDAFLYKDLIIALARSKKMDEVLELWESMRK 172
+++ + + + + KV+ MQ ++P A ++ LI + A++ K+D L LW+ M+K
Sbjct: 353 SLVDSMGKAGRLDTSMKVYMEMQGFG-HRPSATMFVSLIDSYAKAGKLDTALRLWDEMKK 411
Query: 173 ENLFPDSQTYTEVIRGFLNYGSPADAMNIYEDMKNS---PDP 211
P+ YT +I G AM +++DM+ + P P
Sbjct: 412 SGFRPNFGLYTMIIESHAKSGKLEVAMTVFKDMEKAGFLPTP 453
>AT3G09060.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr3:2766367-2768430 REVERSE
LENGTH=687
Length = 687
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 5/71 (7%)
Query: 138 DW-----YKPDAFLYKDLIIALARSKKMDEVLELWESMRKENLFPDSQTYTEVIRGFLNY 192
DW +KPD F Y +I LA++ K+D+ LEL++ M + + PD Y +I GFL
Sbjct: 173 DWMWKEGFKPDVFSYSTVINDLAKAGKLDDALELFDEMSERGVAPDVTCYNILIDGFLKE 232
Query: 193 GSPADAMNIYE 203
AM +++
Sbjct: 233 KDHKTAMELWD 243
>AT3G18110.1 | Symbols: EMB1270 | Pentatricopeptide repeat (PPR)
superfamily protein | chr3:6204940-6209691 REVERSE
LENGTH=1440
Length = 1440
Score = 47.8 bits (112), Expect = 7e-06, Method: Composition-based stats.
Identities = 27/100 (27%), Positives = 48/100 (48%)
Query: 120 RQQEVSLAFKVFKVMQKQDWYKPDAFLYKDLIIALARSKKMDEVLELWESMRKENLFPDS 179
+Q ++ LA +++K M+ PDA Y LI +L ++ + E L M + P
Sbjct: 414 KQGQLDLALQLYKDMKGLSGRNPDAITYTVLIDSLGKANRTVEAAALMSEMLDVGIKPTL 473
Query: 180 QTYTEVIRGFLNYGSPADAMNIYEDMKNSPDPPEELPFRI 219
QTY+ +I G+ G +A + + M S P+ L + +
Sbjct: 474 QTYSALICGYAKAGKREEAEDTFSCMLRSGTKPDNLAYSV 513
>AT1G77360.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr1:29071983-29073536 REVERSE
LENGTH=517
Length = 517
Score = 47.8 bits (112), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 63/116 (54%), Gaps = 3/116 (2%)
Query: 105 RLLKVDIIA-VLTELERQQEVSLAFKVFKVMQKQDWYKPDAFLYKDLIIALARSKKMDEV 163
++L V+ V+ + R Q+V A F VM+K D P+ + L+ AL +SK + +
Sbjct: 164 KMLNVETFCIVMRKYARAQKVDEAIYAFNVMEKYD-LPPNLVAFNGLLSALCKSKNVRKA 222
Query: 164 LELWESMRKENLFPDSQTYTEVIRGFLNYGSPADAMNIYEDMKNSPDPPEELPFRI 219
E++E+MR + PDS+TY+ ++ G+ + A ++ +M ++ P+ + + I
Sbjct: 223 QEVFENMR-DRFTPDSKTYSILLEGWGKEPNLPKAREVFREMIDAGCHPDIVTYSI 277
>AT5G06400.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr5:1955959-1959051 FORWARD
LENGTH=1030
Length = 1030
Score = 47.4 bits (111), Expect = 9e-06, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 41/73 (56%), Gaps = 3/73 (4%)
Query: 141 KPDAFLYKDLIIALARSKKMDEVLELWESMRKENLFPDSQTYTEVIRGFLNYGSPADAMN 200
KP +Y LI+ + K++++VLE + M E+ P TYT +I G+++ G +A N
Sbjct: 886 KPGVHVYTSLIVYFFKEKQLEKVLETCQKMEGESCEPSVVTYTAMICGYMSLGKVEEAWN 945
Query: 201 IYEDMK---NSPD 210
+ +M+ SPD
Sbjct: 946 AFRNMEERGTSPD 958
>AT4G20740.1 | Symbols: | Pentatricopeptide repeat (PPR-like)
superfamily protein | chr4:11126151-11128334 FORWARD
LENGTH=727
Length = 727
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 55/106 (51%), Gaps = 4/106 (3%)
Query: 106 LLKVDI---IAVLTELERQQEVSLAFKVFKVMQKQDWYKPDAFLYKDLIIALARSKKMDE 162
L K D+ A++ L + + + +V+ M++ D KPD Y L++ L + +++
Sbjct: 293 LCKPDVFAYTAMIKTLVSEGNLDASLRVWDEMRR-DEIKPDVMAYGTLVVGLCKDGRVER 351
Query: 163 VLELWESMRKENLFPDSQTYTEVIRGFLNYGSPADAMNIYEDMKNS 208
EL+ M+ + + D + Y +I GF+ G A N++ED+ +S
Sbjct: 352 GYELFMEMKGKQILIDREIYRVLIEGFVADGKVRSACNLWEDLVDS 397
>AT2G16880.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr2:7312262-7314493 REVERSE
LENGTH=743
Length = 743
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/115 (21%), Positives = 58/115 (50%), Gaps = 1/115 (0%)
Query: 104 LRLLKVDIIAVLTELERQQEVSLAFKVFKVMQKQDWYKPDAFLYKDLIIALARSKKMDEV 163
+++ + + +L L +++++ A + K+ + D Y LI+ R +K+++
Sbjct: 447 IKMNTITLNTILDALCKERKLDEAHNLLNSAHKRGFI-VDEVTYGTLIMGFFREEKVEKA 505
Query: 164 LELWESMRKENLFPDSQTYTEVIRGFLNYGSPADAMNIYEDMKNSPDPPEELPFR 218
LE+W+ M+K + P T+ +I G ++G AM ++++ S P++ F
Sbjct: 506 LEMWDEMKKVKITPTVSTFNSLIGGLCHHGKTELAMEKFDELAESGLLPDDSTFN 560