Miyakogusa Predicted Gene
- Lj0g3v0348139.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0348139.1 Non Chatacterized Hit- tr|A3ABP1|A3ABP1_ORYSJ
Putative uncharacterized protein OS=Oryza sativa
subsp,54.32,4e-19,DUF3223,Protein of unknown function DUF3223;
seg,NULL; no description,Copper amine oxidase,
N2/N3-te,NODE_20929_length_1204_cov_21.093023.path1.1
(197 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G46630.1 | Symbols: | Protein of unknown function (DUF3223) ... 215 1e-56
AT1G45230.1 | Symbols: | Protein of unknown function (DUF3223) ... 120 5e-28
AT2G40030.1 | Symbols: NRPD1B, DRD3, ATNRPD1B, DMS5, NRPE1 | nuc... 119 1e-27
AT1G45230.2 | Symbols: | Protein of unknown function (DUF3223) ... 119 2e-27
AT1G63020.2 | Symbols: NRPD1A | nuclear RNA polymerase D1A | chr... 58 4e-09
AT1G63020.1 | Symbols: NRPD1A, POL IVA, SDE4, NRPD1, SMD2 | nucl... 58 4e-09
>AT3G46630.1 | Symbols: | Protein of unknown function (DUF3223) |
chr3:17181138-17182346 REVERSE LENGTH=207
Length = 207
Score = 215 bits (548), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 111/174 (63%), Positives = 127/174 (72%), Gaps = 7/174 (4%)
Query: 28 RHRLWCSAATNSPSNEAEEKAIP-----STTFNLRSDKYQANHPRWEDDPDYRKWRVKEE 82
R RL CS A E + P + N+ S N R+ED PDYRKW+ E
Sbjct: 35 RRRLLCSLADRPQFYENNDSVSPVEGSGAAAMNVTSPVVD-NSWRYED-PDYRKWKNLEA 92
Query: 83 EILKDIEPIMLLMKDILHSRKYMDGQRLSVEDEKDIVEKLLAYHPHSEDKIGSGLESIMV 142
EIL+DIEPI LL K+ILHS +Y+DG+RL EDEK ++EKLL YHP+S+DKIG GL+ IMV
Sbjct: 93 EILRDIEPISLLAKEILHSDRYLDGERLDFEDEKIVMEKLLPYHPYSKDKIGCGLDFIMV 152
Query: 143 DRHPHFRHSRCLFVVRTDGGWIDFSYQKCLRKYIRDKYPIHAERFIREHFKRGS 196
DRHP FRHSRCLFVVRTDGGWIDFSYQKCLR Y+RDKYP HAERFIREHFKR S
Sbjct: 153 DRHPQFRHSRCLFVVRTDGGWIDFSYQKCLRAYVRDKYPSHAERFIREHFKRAS 206
>AT1G45230.1 | Symbols: | Protein of unknown function (DUF3223) |
chr1:17169874-17171381 REVERSE LENGTH=219
Length = 219
Score = 120 bits (302), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 56/114 (49%), Positives = 79/114 (69%)
Query: 81 EEEILKDIEPIMLLMKDILHSRKYMDGQRLSVEDEKDIVEKLLAYHPHSEDKIGSGLESI 140
E++IL+ P++ ++ ILHS KY + RLS E E+ I+E LL YHP E KIG G++ I
Sbjct: 101 EDKILEVTVPLVGFVRMILHSGKYANRDRLSPEHERTIIEMLLPYHPECEKKIGCGIDYI 160
Query: 141 MVDRHPHFRHSRCLFVVRTDGGWIDFSYQKCLRKYIRDKYPIHAERFIREHFKR 194
MV HP F SRC+F+VR DG +DFSY KC++ I+ KYP++A+ FI HF++
Sbjct: 161 MVGHHPDFESSRCMFIVRKDGEVVDFSYWKCIKGLIKKKYPLYADSFILRHFRK 214
>AT2G40030.1 | Symbols: NRPD1B, DRD3, ATNRPD1B, DMS5, NRPE1 | nuclear
RNA polymerase D1B | chr2:16715089-16723406 FORWARD
LENGTH=1976
Length = 1976
Score = 119 bits (298), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 53/115 (46%), Positives = 77/115 (66%)
Query: 80 KEEEILKDIEPIMLLMKDILHSRKYMDGQRLSVEDEKDIVEKLLAYHPHSEDKIGSGLES 139
+E+E+L D+EP+M ++ I+H Y DG +S +D+ ++EK+L +HP E K+GSG++
Sbjct: 1735 EEQELLSDVEPVMRTLRKIMHPSAYPDGDPISDDDKTFVLEKILNFHPQKETKLGSGVDF 1794
Query: 140 IMVDRHPHFRHSRCLFVVRTDGGWIDFSYQKCLRKYIRDKYPIHAERFIREHFKR 194
I VD+H F SRC FVV TDG DFSY+K L Y+ KYP AE FI ++F +
Sbjct: 1795 ITVDKHTIFSDSRCFFVVSTDGAKQDFSYRKSLNNYLMKKYPDRAEEFIDKYFTK 1849
>AT1G45230.2 | Symbols: | Protein of unknown function (DUF3223) |
chr1:17169874-17171381 REVERSE LENGTH=219
Length = 219
Score = 119 bits (297), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 56/114 (49%), Positives = 79/114 (69%)
Query: 81 EEEILKDIEPIMLLMKDILHSRKYMDGQRLSVEDEKDIVEKLLAYHPHSEDKIGSGLESI 140
E++IL+ P++ ++ ILHS KY + RLS E E+ I+E LL YHP E KIG G++ I
Sbjct: 101 EDKILEVTVPLVGFVRMILHSGKYANRDRLSPEHERTIIEMLLPYHPECEKKIGCGIDYI 160
Query: 141 MVDRHPHFRHSRCLFVVRTDGGWIDFSYQKCLRKYIRDKYPIHAERFIREHFKR 194
MV HP F SRC+F+VR DG +DFSY KC++ I+ KYP++A+ FI HF++
Sbjct: 161 MVWHHPDFESSRCMFIVRKDGEVVDFSYWKCIKGLIKKKYPLYADSFILRHFRK 214
>AT1G63020.2 | Symbols: NRPD1A | nuclear RNA polymerase D1A |
chr1:23355329-23361126 REVERSE LENGTH=1453
Length = 1453
Score = 58.2 bits (139), Expect = 4e-09, Method: Composition-based stats.
Identities = 40/111 (36%), Positives = 60/111 (54%), Gaps = 4/111 (3%)
Query: 86 KDIEPIMLLMKDILHSRKYMDGQRLSVEDEKDIVEKLLAYHPHSEDKIGSGLESIMVDRH 145
K+IE + +K ILHS Y + L+ DE +V+ +L HP+S +KIG G++ I V +
Sbjct: 1337 KNIELLSQSLKRILHS--YEINELLNERDE-GLVKMVLQLHPNSVEKIGPGVKGIRVAKS 1393
Query: 146 PHFRHSRCLFVVRTDGGWIDFSYQKCLRKYIRDKYPIHAERFIREHFKRGS 196
H S C VVR DG + DFSY KC+ + P + ++ K G+
Sbjct: 1394 KH-GDSCCFEVVRIDGTFEDFSYHKCVLGATKIIAPKKMNFYKSKYLKNGT 1443
>AT1G63020.1 | Symbols: NRPD1A, POL IVA, SDE4, NRPD1, SMD2 | nuclear
RNA polymerase D1A | chr1:23355329-23361126 REVERSE
LENGTH=1453
Length = 1453
Score = 58.2 bits (139), Expect = 4e-09, Method: Composition-based stats.
Identities = 40/111 (36%), Positives = 60/111 (54%), Gaps = 4/111 (3%)
Query: 86 KDIEPIMLLMKDILHSRKYMDGQRLSVEDEKDIVEKLLAYHPHSEDKIGSGLESIMVDRH 145
K+IE + +K ILHS Y + L+ DE +V+ +L HP+S +KIG G++ I V +
Sbjct: 1337 KNIELLSQSLKRILHS--YEINELLNERDE-GLVKMVLQLHPNSVEKIGPGVKGIRVAKS 1393
Query: 146 PHFRHSRCLFVVRTDGGWIDFSYQKCLRKYIRDKYPIHAERFIREHFKRGS 196
H S C VVR DG + DFSY KC+ + P + ++ K G+
Sbjct: 1394 KH-GDSCCFEVVRIDGTFEDFSYHKCVLGATKIIAPKKMNFYKSKYLKNGT 1443