Miyakogusa Predicted Gene
- Lj0g3v0343589.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0343589.1 Non Characterized Hit- tr|I1MAU7|I1MAU7_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.25850 PE,80.65,0,RRM,RNA
recognition motif domain; RNA recognition motif,RNA recognition motif
domain; seg,NULL; RNA-,CUFF.23571.1
(269 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr5g064120.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 198 4e-51
Medtr3g116130.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 163 2e-40
Medtr3g116130.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 162 2e-40
Medtr8g024520.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 150 8e-37
Medtr8g024520.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 150 8e-37
Medtr4g035310.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 149 3e-36
Medtr4g035310.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 149 3e-36
Medtr7g117495.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 144 1e-34
Medtr7g117495.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 144 1e-34
Medtr3g092490.3 | RNA-binding (RRM/RBD/RNP motif) family protein... 139 3e-33
Medtr3g092490.4 | RNA-binding (RRM/RBD/RNP motif) family protein... 139 3e-33
Medtr3g092490.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 138 5e-33
Medtr3g092490.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 138 5e-33
Medtr2g026180.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 82 6e-16
Medtr2g026180.3 | RNA-binding (RRM/RBD/RNP motif) family protein... 82 6e-16
Medtr2g026180.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 82 6e-16
Medtr8g463890.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 80 3e-15
Medtr3g055990.1 | heterogeneous nuclear ribonucleoprotein 27C, p... 78 7e-15
Medtr3g055990.2 | heterogeneous nuclear ribonucleoprotein 27C, p... 78 8e-15
Medtr4g088010.1 | heterogeneous nuclear ribonucleoprotein | HC |... 78 9e-15
Medtr7g088140.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 75 7e-14
Medtr7g088140.5 | RNA recognition motif, a.k.a. RRM, RBD protein... 75 7e-14
Medtr7g088140.4 | RNA recognition motif, a.k.a. RRM, RBD protein... 75 7e-14
Medtr7g088140.3 | RNA recognition motif, a.k.a. RRM, RBD protein... 75 7e-14
Medtr1g073690.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 75 7e-14
Medtr1g073690.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 75 7e-14
Medtr7g088140.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 75 8e-14
Medtr4g070190.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 72 8e-13
Medtr5g088220.3 | RNA recognition motif, a.k.a. RRM, RBD protein... 70 2e-12
Medtr5g088220.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 70 2e-12
Medtr5g088220.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 70 2e-12
Medtr5g097580.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 70 3e-12
Medtr5g097580.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 69 4e-12
Medtr4g070140.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 69 7e-12
Medtr7g013730.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 67 1e-11
Medtr7g013730.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 67 1e-11
Medtr4g070080.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 66 3e-11
Medtr4g070080.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 66 3e-11
Medtr3g084040.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 66 4e-11
Medtr3g084040.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 64 2e-10
Medtr4g109540.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 63 3e-10
Medtr3g103420.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 62 5e-10
Medtr3g025880.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 62 5e-10
Medtr3g025880.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 62 5e-10
Medtr4g063560.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 62 5e-10
Medtr7g105260.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 62 6e-10
Medtr3g029580.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 61 9e-10
Medtr7g013740.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 60 2e-09
Medtr3g082650.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 60 2e-09
Medtr3g029580.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 60 2e-09
Medtr3g080130.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 59 4e-09
Medtr8g076100.1 | heterogeneous nuclear ribonucleoprotein | HC |... 59 5e-09
Medtr7g118120.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 58 9e-09
Medtr7g118120.3 | RNA recognition motif, a.k.a. RRM, RBD protein... 58 9e-09
Medtr7g118120.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 58 9e-09
Medtr7g094660.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 58 1e-08
Medtr6g004810.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 58 1e-08
Medtr2g026180.4 | RNA-binding (RRM/RBD/RNP motif) family protein... 57 2e-08
Medtr8g007390.3 | heterogeneous nuclear ribonucleoprotein | HC |... 56 3e-08
Medtr8g007390.4 | heterogeneous nuclear ribonucleoprotein | HC |... 56 3e-08
Medtr8g007390.2 | heterogeneous nuclear ribonucleoprotein | HC |... 56 3e-08
Medtr8g007390.1 | heterogeneous nuclear ribonucleoprotein | HC |... 56 3e-08
Medtr2g096560.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 56 3e-08
Medtr4g109540.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 56 4e-08
Medtr7g094670.1 | mRNA capping enzyme, putative | LC | chr7:3777... 56 4e-08
Medtr8g076100.2 | heterogeneous nuclear ribonucleoprotein | HC |... 55 5e-08
Medtr1g092860.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 55 5e-08
Medtr8g076100.3 | heterogeneous nuclear ribonucleoprotein | HC |... 55 6e-08
Medtr4g052940.3 | RNA recognition motif, a.k.a. RRM, RBD protein... 55 9e-08
Medtr4g052940.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 55 9e-08
Medtr4g052940.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 55 9e-08
Medtr4g052940.4 | RNA recognition motif, a.k.a. RRM, RBD protein... 54 2e-07
Medtr7g099940.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 54 2e-07
Medtr2g013130.3 | U2 snRNP auxilliary factor, large subunit, spl... 54 2e-07
Medtr7g081210.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 54 2e-07
Medtr2g013130.4 | U2 snRNP auxilliary factor, large subunit, spl... 53 2e-07
Medtr2g013130.1 | U2 snRNP auxilliary factor, large subunit, spl... 53 3e-07
Medtr2g013130.2 | U2 snRNP auxilliary factor, large subunit, spl... 53 3e-07
Medtr3g027140.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 53 4e-07
Medtr4g081520.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 52 6e-07
Medtr1g045510.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 52 8e-07
Medtr7g010360.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 52 8e-07
Medtr4g104470.1 | 31 kDa ribonucleoprotein | HC | chr4:43224367-... 51 1e-06
Medtr6g040070.1 | DEAD/DEAH-box helicase | HC | chr6:14397151-14... 51 1e-06
Medtr1g056520.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 50 2e-06
Medtr1g056520.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 50 2e-06
Medtr3g075500.1 | 31 kDa ribonucleoprotein | HC | chr3:34381451-... 50 2e-06
Medtr1g064230.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 50 2e-06
Medtr1g064230.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 50 2e-06
Medtr3g014000.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 50 2e-06
Medtr5g017280.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 50 2e-06
Medtr5g017280.3 | RNA-binding (RRM/RBD/RNP motif) family protein... 50 2e-06
Medtr5g017280.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 50 2e-06
Medtr7g106440.1 | 33 kDa ribonucleoprotein | HC | chr7:43324307-... 50 2e-06
Medtr5g017280.4 | RNA-binding (RRM/RBD/RNP motif) family protein... 50 2e-06
Medtr3g075500.2 | 31 kDa ribonucleoprotein | HC | chr3:34381440-... 50 2e-06
Medtr7g096260.1 | multiple RNA-binding domain protein | HC | chr... 48 8e-06
Medtr7g096260.2 | multiple RNA-binding domain protein | HC | chr... 48 8e-06
>Medtr5g064120.1 | RNA-binding (RRM/RBD/RNP motif) family protein
| HC | chr5:26612934-26618708 | 20130731
Length = 283
Score = 198 bits (504), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 89/93 (95%), Positives = 92/93 (98%)
Query: 1 MAYPHYRSQFGDTTFTKVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYG 60
MAYPHYRSQFGDTTFTKVFVGGLAWETPT+EMR+YFEQFGDILEAVIITDKNT KSKGYG
Sbjct: 1 MAYPHYRSQFGDTTFTKVFVGGLAWETPTDEMRTYFEQFGDILEAVIITDKNTGKSKGYG 60
Query: 61 FVTFRDPESARRACADPNPIIDGRRANCNIASL 93
FVTFRDPESARRACADPNP+IDGRRANCNIASL
Sbjct: 61 FVTFRDPESARRACADPNPVIDGRRANCNIASL 93
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 42/55 (76%), Positives = 48/55 (87%), Gaps = 4/55 (7%)
Query: 179 GAASSS--TPYYYGYSVQAA-PRGTFSTPQAHRMPAGPSYLYYPTTPIEG-SFSA 229
G +SS+ +PYYYGYS+QAA PRGTFSTPQ HR+ AGPSYLYYPTTP+EG SFSA
Sbjct: 177 GPSSSTMGSPYYYGYSMQAAAPRGTFSTPQPHRIQAGPSYLYYPTTPMEGASFSA 231
>Medtr3g116130.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:54301450-54296178 | 20130731
Length = 281
Score = 163 bits (412), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 72/85 (84%), Positives = 80/85 (94%)
Query: 8 SQFGDTTFTKVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDP 67
S FGDTT+TKVFVGGLAWET +E MR YFEQFGDILEAV+ITDKNT +SKGYGFVTFRDP
Sbjct: 21 SPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGDILEAVVITDKNTGRSKGYGFVTFRDP 80
Query: 68 ESARRACADPNPIIDGRRANCNIAS 92
E+ARRACADP+P+IDGRRANCN+AS
Sbjct: 81 EAARRACADPSPVIDGRRANCNLAS 105
>Medtr3g116130.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:54300708-54296502 | 20130731
Length = 372
Score = 162 bits (411), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 72/85 (84%), Positives = 80/85 (94%)
Query: 8 SQFGDTTFTKVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDP 67
S FGDTT+TKVFVGGLAWET +E MR YFEQFGDILEAV+ITDKNT +SKGYGFVTFRDP
Sbjct: 21 SPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGDILEAVVITDKNTGRSKGYGFVTFRDP 80
Query: 68 ESARRACADPNPIIDGRRANCNIAS 92
E+ARRACADP+P+IDGRRANCN+AS
Sbjct: 81 EAARRACADPSPVIDGRRANCNLAS 105
>Medtr8g024520.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr8:9035953-9039164 | 20130731
Length = 282
Score = 150 bits (380), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 66/87 (75%), Positives = 77/87 (88%)
Query: 7 RSQFGDTTFTKVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRD 66
+ Q+ DTTFTK+FVGGLAWET E MR YFEQFG+ILEAV+ITDK T +SKGYGFVTF+D
Sbjct: 16 QDQYNDTTFTKLFVGGLAWETQRETMRMYFEQFGEILEAVVITDKYTGRSKGYGFVTFKD 75
Query: 67 PESARRACADPNPIIDGRRANCNIASL 93
PE+A RAC +P+P+IDGRRANCNIASL
Sbjct: 76 PEAAIRACQNPSPVIDGRRANCNIASL 102
>Medtr8g024520.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr8:9035953-9039164 | 20130731
Length = 280
Score = 150 bits (380), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 66/87 (75%), Positives = 77/87 (88%)
Query: 7 RSQFGDTTFTKVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRD 66
+ Q+ DTTFTK+FVGGLAWET E MR YFEQFG+ILEAV+ITDK T +SKGYGFVTF+D
Sbjct: 16 QDQYNDTTFTKLFVGGLAWETQRETMRMYFEQFGEILEAVVITDKYTGRSKGYGFVTFKD 75
Query: 67 PESARRACADPNPIIDGRRANCNIASL 93
PE+A RAC +P+P+IDGRRANCNIASL
Sbjct: 76 PEAAIRACQNPSPVIDGRRANCNIASL 102
>Medtr4g035310.2 | RNA recognition motif, a.k.a. RRM, RBD protein
| HC | chr4:12141158-12149871 | 20130731
Length = 272
Score = 149 bits (376), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 66/86 (76%), Positives = 75/86 (87%)
Query: 8 SQFGDTTFTKVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDP 67
QFGDTT+TKVFVGGLAWET E M+ YFEQFG+ILEAV+ITDK T +SKGYGFVTFR+P
Sbjct: 8 GQFGDTTYTKVFVGGLAWETQKETMKKYFEQFGEILEAVVITDKATGRSKGYGFVTFREP 67
Query: 68 ESARRACADPNPIIDGRRANCNIASL 93
++A RAC D PIIDGRRANCN+ASL
Sbjct: 68 DAAMRACVDAAPIIDGRRANCNLASL 93
>Medtr4g035310.1 | RNA recognition motif, a.k.a. RRM, RBD protein
| HC | chr4:12141158-12149871 | 20130731
Length = 267
Score = 149 bits (376), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 66/86 (76%), Positives = 75/86 (87%)
Query: 8 SQFGDTTFTKVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDP 67
QFGDTT+TKVFVGGLAWET E M+ YFEQFG+ILEAV+ITDK T +SKGYGFVTFR+P
Sbjct: 8 GQFGDTTYTKVFVGGLAWETQKETMKKYFEQFGEILEAVVITDKATGRSKGYGFVTFREP 67
Query: 68 ESARRACADPNPIIDGRRANCNIASL 93
++A RAC D PIIDGRRANCN+ASL
Sbjct: 68 DAAMRACVDAAPIIDGRRANCNLASL 93
>Medtr7g117495.2 | RNA-binding (RRM/RBD/RNP motif) family protein
| HC | chr7:48649576-48651271 | 20130731
Length = 253
Score = 144 bits (362), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 63/86 (73%), Positives = 76/86 (88%)
Query: 8 SQFGDTTFTKVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDP 67
SQFGDTT TKVFVGGLAWETP + +R +FE++GDILEAVII+DK T +SKGYGFVTF+D
Sbjct: 10 SQFGDTTLTKVFVGGLAWETPKDTLREHFEKYGDILEAVIISDKVTGRSKGYGFVTFKDA 69
Query: 68 ESARRACADPNPIIDGRRANCNIASL 93
+SA++AC +P II+GRRANCNIASL
Sbjct: 70 DSAKKACEEPTVIINGRRANCNIASL 95
>Medtr7g117495.1 | RNA-binding (RRM/RBD/RNP motif) family protein
| HC | chr7:48649613-48651189 | 20130731
Length = 256
Score = 144 bits (362), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 63/86 (73%), Positives = 76/86 (88%)
Query: 8 SQFGDTTFTKVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDP 67
SQFGDTT TKVFVGGLAWETP + +R +FE++GDILEAVII+DK T +SKGYGFVTF+D
Sbjct: 10 SQFGDTTLTKVFVGGLAWETPKDTLREHFEKYGDILEAVIISDKVTGRSKGYGFVTFKDA 69
Query: 68 ESARRACADPNPIIDGRRANCNIASL 93
+SA++AC +P II+GRRANCNIASL
Sbjct: 70 DSAKKACEEPTVIINGRRANCNIASL 95
>Medtr3g092490.3 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:42251169-42253131 | 20130731
Length = 178
Score = 139 bits (350), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 59/84 (70%), Positives = 71/84 (84%)
Query: 8 SQFGDTTFTKVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDP 67
GDTT+TK+FVGGLAWET + ++ YF+QFGDILEAV+ITD+ T KSKGYGFVTF+DP
Sbjct: 18 KHVGDTTYTKIFVGGLAWETKRDTLKRYFDQFGDILEAVVITDRTTGKSKGYGFVTFKDP 77
Query: 68 ESARRACADPNPIIDGRRANCNIA 91
SA AC +PNP+IDGRRANCN+A
Sbjct: 78 NSAILACQNPNPMIDGRRANCNLA 101
>Medtr3g092490.4 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:42251169-42253131 | 20130731
Length = 178
Score = 139 bits (350), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 59/84 (70%), Positives = 71/84 (84%)
Query: 8 SQFGDTTFTKVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDP 67
GDTT+TK+FVGGLAWET + ++ YF+QFGDILEAV+ITD+ T KSKGYGFVTF+DP
Sbjct: 18 KHVGDTTYTKIFVGGLAWETKRDTLKRYFDQFGDILEAVVITDRTTGKSKGYGFVTFKDP 77
Query: 68 ESARRACADPNPIIDGRRANCNIA 91
SA AC +PNP+IDGRRANCN+A
Sbjct: 78 NSAILACQNPNPMIDGRRANCNLA 101
>Medtr3g092490.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:42251226-42253109 | 20130731
Length = 251
Score = 138 bits (348), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 59/81 (72%), Positives = 71/81 (87%)
Query: 11 GDTTFTKVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDPESA 70
GDTT+TK+FVGGLAWET + ++ YF+QFGDILEAV+ITD+ T KSKGYGFVTF+DP SA
Sbjct: 21 GDTTYTKIFVGGLAWETKRDTLKRYFDQFGDILEAVVITDRTTGKSKGYGFVTFKDPNSA 80
Query: 71 RRACADPNPIIDGRRANCNIA 91
AC +PNP+IDGRRANCN+A
Sbjct: 81 ILACQNPNPMIDGRRANCNLA 101
>Medtr3g092490.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:42251169-42253164 | 20130731
Length = 250
Score = 138 bits (348), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 59/84 (70%), Positives = 71/84 (84%)
Query: 8 SQFGDTTFTKVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDP 67
GDTT+TK+FVGGLAWET + ++ YF+QFGDILEAV+ITD+ T KSKGYGFVTF+DP
Sbjct: 18 KHVGDTTYTKIFVGGLAWETKRDTLKRYFDQFGDILEAVVITDRTTGKSKGYGFVTFKDP 77
Query: 68 ESARRACADPNPIIDGRRANCNIA 91
SA AC +PNP+IDGRRANCN+A
Sbjct: 78 NSAILACQNPNPMIDGRRANCNLA 101
>Medtr2g026180.2 | RNA-binding (RRM/RBD/RNP motif) family protein
| HC | chr2:9465398-9461370 | 20130731
Length = 481
Score = 82.0 bits (201), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 50/68 (73%), Gaps = 1/68 (1%)
Query: 17 KVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDPESARRACAD 76
K+F+GG++W+T + +R YF+ FGD++EAVI+ D+ T +++G+GFV F DP A R +
Sbjct: 5 KLFIGGISWDTNEDRLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 64
Query: 77 PNPIIDGR 84
+ +IDGR
Sbjct: 65 KH-VIDGR 71
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 37/58 (63%)
Query: 17 KVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDPESARRAC 74
K+FVGGLA + ++YF+QFG I + V++ D NT + +G+GF+T+ E+ +
Sbjct: 107 KIFVGGLASTVTESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVEKVL 164
>Medtr2g026180.3 | RNA-binding (RRM/RBD/RNP motif) family protein
| HC | chr2:9465402-9461271 | 20130731
Length = 481
Score = 82.0 bits (201), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 50/68 (73%), Gaps = 1/68 (1%)
Query: 17 KVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDPESARRACAD 76
K+F+GG++W+T + +R YF+ FGD++EAVI+ D+ T +++G+GFV F DP A R +
Sbjct: 5 KLFIGGISWDTNEDRLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 64
Query: 77 PNPIIDGR 84
+ +IDGR
Sbjct: 65 KH-VIDGR 71
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 37/58 (63%)
Query: 17 KVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDPESARRAC 74
K+FVGGLA + ++YF+QFG I + V++ D NT + +G+GF+T+ E+ +
Sbjct: 107 KIFVGGLASTVTESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVEKVL 164
>Medtr2g026180.1 | RNA-binding (RRM/RBD/RNP motif) family protein
| HC | chr2:9465359-9461307 | 20130731
Length = 481
Score = 82.0 bits (201), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 50/68 (73%), Gaps = 1/68 (1%)
Query: 17 KVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDPESARRACAD 76
K+F+GG++W+T + +R YF+ FGD++EAVI+ D+ T +++G+GFV F DP A R +
Sbjct: 5 KLFIGGISWDTNEDRLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 64
Query: 77 PNPIIDGR 84
+ +IDGR
Sbjct: 65 KH-VIDGR 71
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 37/58 (63%)
Query: 17 KVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDPESARRAC 74
K+FVGGLA + ++YF+QFG I + V++ D NT + +G+GF+T+ E+ +
Sbjct: 107 KIFVGGLASTVTESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVEKVL 164
>Medtr8g463890.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr8:22547309-22542060 | 20130731
Length = 445
Score = 79.7 bits (195), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 37/81 (45%), Positives = 52/81 (64%)
Query: 12 DTTFTKVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDPESAR 71
D + K+F+ GL W+T TE +RS F +G++ EA++I DK T KSKGYGFVTF + A
Sbjct: 69 DISRRKLFIRGLGWDTTTEGLRSLFSTYGELEEAIVIVDKATGKSKGYGFVTFLHVDGAL 128
Query: 72 RACADPNPIIDGRRANCNIAS 92
A +P+ IDGR +A+
Sbjct: 129 LALREPSKRIDGRVTVTQLAA 149
Score = 58.2 bits (139), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 46/80 (57%)
Query: 12 DTTFTKVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDPESAR 71
D K++V + + P +++ ++F +G+I E + DK T +SKG+ ++ PE A
Sbjct: 161 DVAQRKIYVSNVPPDLPGDKLLAHFSIYGEIEEGPLGFDKQTGRSKGFALFVYKTPEGAN 220
Query: 72 RACADPNPIIDGRRANCNIA 91
A ++P ++GR+ NC +A
Sbjct: 221 AAVSEPVKNVEGRQLNCKLA 240
>Medtr3g055990.1 | heterogeneous nuclear ribonucleoprotein 27C,
putative | HC | chr3:22254761-22250364 | 20130731
Length = 481
Score = 78.2 bits (191), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 51/73 (69%), Gaps = 1/73 (1%)
Query: 12 DTTFTKVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDPESAR 71
++ K+F+GG++W+T E ++ YF +G+++EAVI+ D+ T +++G+GFV F DP A
Sbjct: 2 ESDLGKLFIGGISWDTDEERLKEYFATYGEVIEAVIMRDRATGRARGFGFVVFSDPAVAE 61
Query: 72 RACADPNPIIDGR 84
R D + IIDGR
Sbjct: 62 RVIIDKH-IIDGR 73
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 35/58 (60%)
Query: 17 KVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDPESARRAC 74
K+FVGGL + + YF+QFG I + V++ D NT + +G+GF+T+ E+ R
Sbjct: 107 KIFVGGLPSTITESDFKMYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVL 164
>Medtr3g055990.2 | heterogeneous nuclear ribonucleoprotein 27C,
putative | HC | chr3:22254761-22251454 | 20130731
Length = 478
Score = 78.2 bits (191), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 51/73 (69%), Gaps = 1/73 (1%)
Query: 12 DTTFTKVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDPESAR 71
++ K+F+GG++W+T E ++ YF +G+++EAVI+ D+ T +++G+GFV F DP A
Sbjct: 2 ESDLGKLFIGGISWDTDEERLKEYFATYGEVIEAVIMRDRATGRARGFGFVVFSDPAVAE 61
Query: 72 RACADPNPIIDGR 84
R D + IIDGR
Sbjct: 62 RVIIDKH-IIDGR 73
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 35/58 (60%)
Query: 17 KVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDPESARRAC 74
K+FVGGL + + YF+QFG I + V++ D NT + +G+GF+T+ E+ R
Sbjct: 107 KIFVGGLPSTITESDFKMYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVL 164
>Medtr4g088010.1 | heterogeneous nuclear ribonucleoprotein | HC |
chr4:34502474-34498575 | 20130731
Length = 356
Score = 77.8 bits (190), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 38/81 (46%), Positives = 53/81 (65%)
Query: 12 DTTFTKVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDPESAR 71
DTT K+FV GL+ ET TE +R+ F +GD+ EA++I DK T +SKGYGFV +R + A
Sbjct: 72 DTTRRKLFVRGLSGETTTETLRTVFSSYGDLDEAIVIFDKATGRSKGYGFVVYRHVDGAV 131
Query: 72 RACADPNPIIDGRRANCNIAS 92
A +P+ IDGR +A+
Sbjct: 132 LALKEPSKKIDGRMTVTQLAA 152
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 45/81 (55%)
Query: 11 GDTTFTKVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDPESA 70
GD + KVFVG + +E E + S F ++G+I E + DK + K++G+ F ++ E A
Sbjct: 158 GDVSSRKVFVGNVPFEVSAESLLSEFSKYGEIEEGPLGFDKASGKTRGFAFFVYKTEEGA 217
Query: 71 RRACADPNPIIDGRRANCNIA 91
+ + A+ +DG + C A
Sbjct: 218 KNSVAESMKTVDGHQVICKFA 238
>Medtr7g088140.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:34304385-34297881 | 20130731
Length = 490
Score = 75.1 bits (183), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 49/83 (59%)
Query: 11 GDTTFTKVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDPESA 70
GD + K+FV GL W+T + + + F Q+G+I + +TDK + KSKGYGF+ F+ A
Sbjct: 122 GDASHRKIFVHGLGWDTTSATLINAFSQYGEIEDCKAVTDKVSGKSKGYGFILFKRRSGA 181
Query: 71 RRACADPNPIIDGRRANCNIASL 93
R A +P I R C +AS+
Sbjct: 182 RNALKEPQKKIGNRMTACQLASI 204
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 42/78 (53%)
Query: 14 TFTKVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDPESARRA 73
T K+++ + E +++ +F +FG+I E + DK T K KG+ ++ ESARRA
Sbjct: 228 TQRKIYISNVGPELDAQKLFGFFSRFGEIEEGPLGLDKVTGKPKGFCLFVYKSAESARRA 287
Query: 74 CADPNPIIDGRRANCNIA 91
+P+ +G +C A
Sbjct: 288 LEEPHKEFEGHILHCQKA 305
>Medtr7g088140.5 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:34304385-34297914 | 20130731
Length = 490
Score = 75.1 bits (183), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 49/83 (59%)
Query: 11 GDTTFTKVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDPESA 70
GD + K+FV GL W+T + + + F Q+G+I + +TDK + KSKGYGF+ F+ A
Sbjct: 122 GDASHRKIFVHGLGWDTTSATLINAFSQYGEIEDCKAVTDKVSGKSKGYGFILFKRRSGA 181
Query: 71 RRACADPNPIIDGRRANCNIASL 93
R A +P I R C +AS+
Sbjct: 182 RNALKEPQKKIGNRMTACQLASI 204
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 42/78 (53%)
Query: 14 TFTKVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDPESARRA 73
T K+++ + E +++ +F +FG+I E + DK T K KG+ ++ ESARRA
Sbjct: 228 TQRKIYISNVGPELDAQKLFGFFSRFGEIEEGPLGLDKVTGKPKGFCLFVYKSAESARRA 287
Query: 74 CADPNPIIDGRRANCNIA 91
+P+ +G +C A
Sbjct: 288 LEEPHKEFEGHILHCQKA 305
>Medtr7g088140.4 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:34304385-34297914 | 20130731
Length = 490
Score = 75.1 bits (183), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 49/83 (59%)
Query: 11 GDTTFTKVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDPESA 70
GD + K+FV GL W+T + + + F Q+G+I + +TDK + KSKGYGF+ F+ A
Sbjct: 122 GDASHRKIFVHGLGWDTTSATLINAFSQYGEIEDCKAVTDKVSGKSKGYGFILFKRRSGA 181
Query: 71 RRACADPNPIIDGRRANCNIASL 93
R A +P I R C +AS+
Sbjct: 182 RNALKEPQKKIGNRMTACQLASI 204
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 42/78 (53%)
Query: 14 TFTKVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDPESARRA 73
T K+++ + E +++ +F +FG+I E + DK T K KG+ ++ ESARRA
Sbjct: 228 TQRKIYISNVGPELDAQKLFGFFSRFGEIEEGPLGLDKVTGKPKGFCLFVYKSAESARRA 287
Query: 74 CADPNPIIDGRRANCNIA 91
+P+ +G +C A
Sbjct: 288 LEEPHKEFEGHILHCQKA 305
>Medtr7g088140.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:34304385-34297881 | 20130731
Length = 490
Score = 75.1 bits (183), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 49/83 (59%)
Query: 11 GDTTFTKVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDPESA 70
GD + K+FV GL W+T + + + F Q+G+I + +TDK + KSKGYGF+ F+ A
Sbjct: 122 GDASHRKIFVHGLGWDTTSATLINAFSQYGEIEDCKAVTDKVSGKSKGYGFILFKRRSGA 181
Query: 71 RRACADPNPIIDGRRANCNIASL 93
R A +P I R C +AS+
Sbjct: 182 RNALKEPQKKIGNRMTACQLASI 204
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 42/78 (53%)
Query: 14 TFTKVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDPESARRA 73
T K+++ + E +++ +F +FG+I E + DK T K KG+ ++ ESARRA
Sbjct: 228 TQRKIYISNVGPELDAQKLFGFFSRFGEIEEGPLGLDKVTGKPKGFCLFVYKSAESARRA 287
Query: 74 CADPNPIIDGRRANCNIA 91
+P+ +G +C A
Sbjct: 288 LEEPHKEFEGHILHCQKA 305
>Medtr1g073690.2 | RNA-binding (RRM/RBD/RNP motif) family protein
| HC | chr1:32695268-32699181 | 20130731
Length = 469
Score = 75.1 bits (183), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 50/80 (62%), Gaps = 1/80 (1%)
Query: 12 DTTFTKVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDPESAR 71
D+ K+F+GG++W+T E+++ +F +GD+L ++ +KNT K +G+GFV F DP
Sbjct: 2 DSDQGKLFIGGISWDTNEEKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPSVLD 61
Query: 72 RACADPNPIIDGRRANCNIA 91
R D + +IDGR + A
Sbjct: 62 RVLEDKH-VIDGRTVDAKRA 80
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 38/64 (59%)
Query: 11 GDTTFTKVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDPESA 70
G+ K+FVGGL E+ R YFE +G + + V++ D+NT + +G+GF+TF E+
Sbjct: 107 GNMRTKKIFVGGLPPTLAEEKFRQYFEAYGHVTDVVVMYDQNTGRPRGFGFITFDTEEAV 166
Query: 71 RRAC 74
R
Sbjct: 167 DRVL 170
>Medtr1g073690.1 | RNA-binding (RRM/RBD/RNP motif) family protein
| HC | chr1:32695268-32699181 | 20130731
Length = 469
Score = 75.1 bits (183), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 50/80 (62%), Gaps = 1/80 (1%)
Query: 12 DTTFTKVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDPESAR 71
D+ K+F+GG++W+T E+++ +F +GD+L ++ +KNT K +G+GFV F DP
Sbjct: 2 DSDQGKLFIGGISWDTNEEKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPSVLD 61
Query: 72 RACADPNPIIDGRRANCNIA 91
R D + +IDGR + A
Sbjct: 62 RVLEDKH-VIDGRTVDAKRA 80
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 38/64 (59%)
Query: 11 GDTTFTKVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDPESA 70
G+ K+FVGGL E+ R YFE +G + + V++ D+NT + +G+GF+TF E+
Sbjct: 107 GNMRTKKIFVGGLPPTLAEEKFRQYFEAYGHVTDVVVMYDQNTGRPRGFGFITFDTEEAV 166
Query: 71 RRAC 74
R
Sbjct: 167 DRVL 170
>Medtr7g088140.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:34304246-34300290 | 20130731
Length = 492
Score = 74.7 bits (182), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 49/83 (59%)
Query: 11 GDTTFTKVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDPESA 70
GD + K+FV GL W+T + + + F Q+G+I + +TDK + KSKGYGF+ F+ A
Sbjct: 122 GDASHRKIFVHGLGWDTTSATLINAFSQYGEIEDCKAVTDKVSGKSKGYGFILFKRRSGA 181
Query: 71 RRACADPNPIIDGRRANCNIASL 93
R A +P I R C +AS+
Sbjct: 182 RNALKEPQKKIGNRMTACQLASI 204
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 42/78 (53%)
Query: 14 TFTKVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDPESARRA 73
T K+++ + E +++ +F +FG+I E + DK T K KG+ ++ ESARRA
Sbjct: 228 TQRKIYISNVGPELDAQKLFGFFSRFGEIEEGPLGLDKVTGKPKGFCLFVYKSAESARRA 287
Query: 74 CADPNPIIDGRRANCNIA 91
+P+ +G +C A
Sbjct: 288 LEEPHKEFEGHILHCQKA 305
>Medtr4g070190.1 | RNA-binding (RRM/RBD/RNP motif) family protein
| LC | chr4:26418780-26419998 | 20130731
Length = 164
Score = 71.6 bits (174), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 48/76 (63%), Gaps = 1/76 (1%)
Query: 17 KVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDPESARRACAD 76
+ FVGGLAW T +E + F Q+G+I+++ II D+ T +S+G+GFVTF D +S R A
Sbjct: 9 RCFVGGLAWATDSEALEKAFSQYGEIIDSKIINDRETGRSRGFGFVTFADEKSMRDAIEG 68
Query: 77 PN-PIIDGRRANCNIA 91
N +DGR N A
Sbjct: 69 MNGQDMDGRNITVNEA 84
>Medtr5g088220.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr5:38253257-38251764 | 20130731
Length = 497
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 45/81 (55%)
Query: 12 DTTFTKVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDPESAR 71
D K+FV GL W+ E + + F ++G+I + +TDK + KSKGY F+ F+ R
Sbjct: 161 DPAHRKIFVHGLGWDATAETLTTTFSKYGEIEDCKAVTDKASGKSKGYAFILFKHRTGCR 220
Query: 72 RACADPNPIIDGRRANCNIAS 92
RA P +I R +C +AS
Sbjct: 221 RALKQPQKVIGNRTTSCQLAS 241
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 44/78 (56%)
Query: 14 TFTKVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDPESARRA 73
T K+FV ++ + +++ +F+QFG++ + + DK T K KG+ ++ ESA++A
Sbjct: 259 TQRKIFVSNVSSDIDPQKLLEFFKQFGEVDDGPLGLDKATGKPKGFALFVYKTVESAKKA 318
Query: 74 CADPNPIIDGRRANCNIA 91
+PN + +G C A
Sbjct: 319 LEEPNKVFEGHTLYCQKA 336
>Medtr5g088220.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr5:38253257-38251764 | 20130731
Length = 497
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 45/81 (55%)
Query: 12 DTTFTKVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDPESAR 71
D K+FV GL W+ E + + F ++G+I + +TDK + KSKGY F+ F+ R
Sbjct: 161 DPAHRKIFVHGLGWDATAETLTTTFSKYGEIEDCKAVTDKASGKSKGYAFILFKHRTGCR 220
Query: 72 RACADPNPIIDGRRANCNIAS 92
RA P +I R +C +AS
Sbjct: 221 RALKQPQKVIGNRTTSCQLAS 241
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 44/78 (56%)
Query: 14 TFTKVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDPESARRA 73
T K+FV ++ + +++ +F+QFG++ + + DK T K KG+ ++ ESA++A
Sbjct: 259 TQRKIFVSNVSSDIDPQKLLEFFKQFGEVDDGPLGLDKATGKPKGFALFVYKTVESAKKA 318
Query: 74 CADPNPIIDGRRANCNIA 91
+PN + +G C A
Sbjct: 319 LEEPNKVFEGHTLYCQKA 336
>Medtr5g088220.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr5:38253257-38251764 | 20130731
Length = 497
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 45/81 (55%)
Query: 12 DTTFTKVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDPESAR 71
D K+FV GL W+ E + + F ++G+I + +TDK + KSKGY F+ F+ R
Sbjct: 161 DPAHRKIFVHGLGWDATAETLTTTFSKYGEIEDCKAVTDKASGKSKGYAFILFKHRTGCR 220
Query: 72 RACADPNPIIDGRRANCNIAS 92
RA P +I R +C +AS
Sbjct: 221 RALKQPQKVIGNRTTSCQLAS 241
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 44/78 (56%)
Query: 14 TFTKVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDPESARRA 73
T K+FV ++ + +++ +F+QFG++ + + DK T K KG+ ++ ESA++A
Sbjct: 259 TQRKIFVSNVSSDIDPQKLLEFFKQFGEVDDGPLGLDKATGKPKGFALFVYKTVESAKKA 318
Query: 74 CADPNPIIDGRRANCNIA 91
+PN + +G C A
Sbjct: 319 LEEPNKVFEGHTLYCQKA 336
>Medtr5g097580.2 | RNA-binding (RRM/RBD/RNP motif) family protein
| HC | chr5:42749843-42753184 | 20130731
Length = 493
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 46/68 (67%), Gaps = 1/68 (1%)
Query: 17 KVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDPESARRACAD 76
K+F+GG++W+T E +R YF +G++ EAVI+ D+ T +++G+GFV F DP A +
Sbjct: 7 KLFIGGISWDTNEERLREYFSTYGEVKEAVIMKDRTTGRARGFGFVVFIDPAVADIVVQE 66
Query: 77 PNPIIDGR 84
+ IDGR
Sbjct: 67 KHN-IDGR 73
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 36/58 (62%)
Query: 17 KVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDPESARRAC 74
K+FVGGLA + + YF+QFG I + V++ D NT + +G+GF+T+ E+ +
Sbjct: 107 KIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDQVL 164
>Medtr5g097580.1 | RNA-binding (RRM/RBD/RNP motif) family protein
| HC | chr5:42749843-42754792 | 20130731
Length = 479
Score = 69.3 bits (168), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 46/68 (67%), Gaps = 1/68 (1%)
Query: 17 KVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDPESARRACAD 76
K+F+GG++W+T E +R YF +G++ EAVI+ D+ T +++G+GFV F DP A +
Sbjct: 7 KLFIGGISWDTNEERLREYFSTYGEVKEAVIMKDRTTGRARGFGFVVFIDPAVADIVVQE 66
Query: 77 PNPIIDGR 84
+ IDGR
Sbjct: 67 KHN-IDGR 73
Score = 54.7 bits (130), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 36/58 (62%)
Query: 17 KVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDPESARRAC 74
K+FVGGLA + + YF+QFG I + V++ D NT + +G+GF+T+ E+ +
Sbjct: 107 KIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDQVL 164
>Medtr4g070140.1 | RNA-binding (RRM/RBD/RNP motif) family protein
| LC | chr4:26401562-26402849 | 20130731
Length = 190
Score = 68.6 bits (166), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 48/76 (63%), Gaps = 1/76 (1%)
Query: 17 KVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDPESARRACAD 76
+ FVGGLAW T ++ + F +FG+I ++ +I D+ T +S+G+GFVTF + +S R A +
Sbjct: 9 RCFVGGLAWATDSQALEQAFSKFGEITDSKVINDRETGRSRGFGFVTFAEEKSMRDAIEE 68
Query: 77 PN-PIIDGRRANCNIA 91
N IDGR N A
Sbjct: 69 MNGQDIDGRNITVNEA 84
>Medtr7g013730.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:3986546-3983001 | 20130731
Length = 253
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 49/77 (63%), Gaps = 1/77 (1%)
Query: 17 KVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDPESARRAC-A 75
K+F+GG+++ T +R F ++GD+L+A II D++T +S+G+GF+TF E A A A
Sbjct: 41 KLFIGGVSYSTDETGLREAFSRYGDVLDAKIIMDRDTGRSRGFGFITFATSEEASSALQA 100
Query: 76 DPNPIIDGRRANCNIAS 92
N +DGR N A+
Sbjct: 101 MDNKELDGRTVRVNYAT 117
>Medtr7g013730.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:3986488-3983001 | 20130731
Length = 253
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 49/77 (63%), Gaps = 1/77 (1%)
Query: 17 KVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDPESARRAC-A 75
K+F+GG+++ T +R F ++GD+L+A II D++T +S+G+GF+TF E A A A
Sbjct: 41 KLFIGGVSYSTDETGLREAFSRYGDVLDAKIIMDRDTGRSRGFGFITFATSEEASSALQA 100
Query: 76 DPNPIIDGRRANCNIAS 92
N +DGR N A+
Sbjct: 101 MDNKELDGRTVRVNYAT 117
>Medtr4g070080.2 | RNA-binding (RRM/RBD/RNP motif) family protein
| LC | chr4:26374538-26375597 | 20130731
Length = 128
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 46/76 (60%), Gaps = 1/76 (1%)
Query: 17 KVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDPESARRACAD 76
+ FVGGLAW T E + F Q+G+I+++ II D+ T +S+G+GFVTF + +S A
Sbjct: 7 RCFVGGLAWATDNEALEKAFSQYGEIVDSKIINDRETGRSRGFGFVTFANEKSMNDAIEA 66
Query: 77 PN-PIIDGRRANCNIA 91
N +DGR N A
Sbjct: 67 MNGQDLDGRNITVNQA 82
>Medtr4g070080.1 | RNA-binding (RRM/RBD/RNP motif) family protein
| LC | chr4:26374412-26375716 | 20130731
Length = 161
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 46/76 (60%), Gaps = 1/76 (1%)
Query: 17 KVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDPESARRACAD 76
+ FVGGLAW T E + F Q+G+I+++ II D+ T +S+G+GFVTF + +S A
Sbjct: 7 RCFVGGLAWATDNEALEKAFSQYGEIVDSKIINDRETGRSRGFGFVTFANEKSMNDAIEA 66
Query: 77 PN-PIIDGRRANCNIA 91
N +DGR N A
Sbjct: 67 MNGQDLDGRNITVNQA 82
>Medtr3g084040.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:37961723-37963823 | 20130731
Length = 146
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 45/69 (65%)
Query: 16 TKVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDPESARRACA 75
+K+F+GGL++ + +R F +GD++EA +ITD+ T +S+G+GFV F ESA A +
Sbjct: 36 SKLFIGGLSYNVDDQSLRDAFTTYGDVVEARVITDRETGRSRGFGFVNFTSEESATSALS 95
Query: 76 DPNPIIDGR 84
++GR
Sbjct: 96 MDGQDLNGR 104
>Medtr3g084040.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:37961794-37963766 | 20130731
Length = 105
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 43/66 (65%)
Query: 16 TKVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDPESARRACA 75
+K+F+GGL++ + +R F +GD++EA +ITD+ T +S+G+GFV F ESA A +
Sbjct: 36 SKLFIGGLSYNVDDQSLRDAFTTYGDVVEARVITDRETGRSRGFGFVNFTSEESATSALS 95
Query: 76 DPNPII 81
++
Sbjct: 96 MDGQVV 101
>Medtr4g109540.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr4:45527069-45523373 | 20130731
Length = 268
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 48/78 (61%), Gaps = 1/78 (1%)
Query: 16 TKVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDPESARRAC- 74
TK+F+GG+++ T +R F ++G++L+A II D+ T +S+G+GF+TF E A A
Sbjct: 42 TKLFIGGVSYSTDENSLREAFSRYGEVLDARIIMDRETGRSRGFGFITFNSVEEASSAIQ 101
Query: 75 ADPNPIIDGRRANCNIAS 92
A + GRR N A+
Sbjct: 102 ALDGQDLHGRRVRVNYAN 119
>Medtr3g103420.1 | RNA-binding (RRM/RBD/RNP motif) family protein
| HC | chr3:47715877-47717644 | 20130731
Length = 371
Score = 62.4 bits (150), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 48/80 (60%), Gaps = 1/80 (1%)
Query: 12 DTTFTKVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDPESAR 71
D+ K+FVGG++ ET + ++ +F ++GD+L + I D+ T +G+GFVTF D SA
Sbjct: 6 DSDKAKLFVGGISRETTEDTLKHHFTKYGDVLHSTISFDRTTRIPRGFGFVTFSDISSAH 65
Query: 72 RACADPNPIIDGRRANCNIA 91
A D + I+ GR+ A
Sbjct: 66 NALQDTHAIL-GRKVEVRKA 84
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 41/75 (54%)
Query: 17 KVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDPESARRACAD 76
K+FVGGL EE + YFE+FG I + V++ D T + +G+GF+TF +S +
Sbjct: 118 KIFVGGLPANMSVEEFKRYFERFGRITDVVVMQDSLTHRPRGFGFITFDSEDSVQSVMMR 177
Query: 77 PNPIIDGRRANCNIA 91
++GR+ A
Sbjct: 178 SFHDLNGRQVEVKRA 192
>Medtr3g025880.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr3:7898677-7894080 | 20130731
Length = 447
Score = 62.0 bits (149), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 49/84 (58%), Gaps = 1/84 (1%)
Query: 10 FGDTTFTKVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDPES 69
F T TK+FVGG+++ T + + F ++G +L+A II D+ + +SKG+GFVT+ E
Sbjct: 38 FSSTPNTKLFVGGISYNTDEQSLSDAFSKYGQVLDARIIMDRESGRSKGFGFVTYNTVEE 97
Query: 70 ARRAC-ADPNPIIDGRRANCNIAS 92
A A A + GRR N A+
Sbjct: 98 ASSAIQALDGQDLYGRRVGVNFAN 121
>Medtr3g025880.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr3:7898604-7894080 | 20130731
Length = 447
Score = 62.0 bits (149), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 49/84 (58%), Gaps = 1/84 (1%)
Query: 10 FGDTTFTKVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDPES 69
F T TK+FVGG+++ T + + F ++G +L+A II D+ + +SKG+GFVT+ E
Sbjct: 38 FSSTPNTKLFVGGISYNTDEQSLSDAFSKYGQVLDARIIMDRESGRSKGFGFVTYNTVEE 97
Query: 70 ARRAC-ADPNPIIDGRRANCNIAS 92
A A A + GRR N A+
Sbjct: 98 ASSAIQALDGQDLYGRRVGVNFAN 121
>Medtr4g063560.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:23466507-23467712 | 20130731
Length = 112
Score = 62.0 bits (149), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 16 TKVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDPESARRACA 75
TK+F+ GL++ T +R FEQ G I+E +I + T +SKGYGFV F +A A
Sbjct: 33 TKLFIAGLSYNTNETVLRDTFEQHGQIIEVKVICNHRTGESKGYGFVRFNSETAAATARK 92
Query: 76 DPN-PIIDGRR 85
+ + I+DGRR
Sbjct: 93 ELHGQIVDGRR 103
>Medtr7g105260.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:42674424-42676547 | 20130731
Length = 140
Score = 62.0 bits (149), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 45/69 (65%), Gaps = 1/69 (1%)
Query: 17 KVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDPESARRACAD 76
K+FVGGL++ T + + F +G ++EA +ITD+ + KSKGYGFVTF + A +A +
Sbjct: 33 KLFVGGLSFHTTEKTLSDAFSNYGQVVEAKVITDRISEKSKGYGFVTFASQDEAEKAITE 92
Query: 77 PN-PIIDGR 84
N ++GR
Sbjct: 93 MNEKALNGR 101
>Medtr3g029580.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr3:9308768-9310458 | 20130731
Length = 134
Score = 61.2 bits (147), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 49/80 (61%), Gaps = 1/80 (1%)
Query: 6 YRSQFGDTTFTKVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFR 65
+R F +K+FV GLA+ T E++ F Q+G++++A I+ +K + KG+G+VTF
Sbjct: 22 FRHLFLRRITSKIFVKGLAFSTTEEKLAEAFSQYGNVVKADIVLNKAKKRCKGFGYVTFA 81
Query: 66 DPESARRACADPN-PIIDGR 84
+ E AR+A N I+ GR
Sbjct: 82 EEEEARKAQIGMNGKILHGR 101
>Medtr7g013740.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:3990787-3988732 | 20130731
Length = 148
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 45/76 (59%), Gaps = 1/76 (1%)
Query: 17 KVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDPESARRAC-A 75
K++VGG+++ T +R F ++GD+L+A +I D+ +SKG+GFVTF E A A A
Sbjct: 41 KLYVGGISYSTDDAGLRESFARYGDVLDARVIIDREQGRSKGFGFVTFATSEEASAALQA 100
Query: 76 DPNPIIDGRRANCNIA 91
N + GR N A
Sbjct: 101 MDNQELHGRTVRVNYA 116
>Medtr3g082650.1 | RNA recognition motif, a.k.a. RRM, RBD protein
| HC | chr3:37290152-37292326 | 20130731
Length = 352
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 47/72 (65%), Gaps = 1/72 (1%)
Query: 17 KVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDPESARRACAD 76
K+F+GGLA +T EE YFE++G+I ++VI+ D++T + +G+GF+T+ D + +
Sbjct: 19 KIFIGGLAKDTTLEEFVKYFERYGEITDSVIMKDRHTGRPRGFGFITYADASVVDQVIQE 78
Query: 77 PNPIIDGRRANC 88
N II+ ++
Sbjct: 79 -NHIINDKQVEI 89
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 42/77 (54%)
Query: 4 PHYRSQFGDTTFTKVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVT 63
P SQ D K+FVGG+ +E++ +F + G+++E II D T +S+G+GFV
Sbjct: 94 PKGASQTNDFKTKKIFVGGIPATVSEDELKIFFSKHGNVVEHEIIRDHTTKRSRGFGFVV 153
Query: 64 FRDPESARRACADPNPI 80
F ++ AD N I
Sbjct: 154 FDSDKAVDNLLADGNMI 170
>Medtr3g029580.2 | RNA recognition motif, a.k.a. RRM, RBD protein
| HC | chr3:9308768-9310458 | 20130731
Length = 137
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 44/68 (64%)
Query: 6 YRSQFGDTTFTKVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFR 65
+R F +K+FV GLA+ T E++ F Q+G++++A I+ +K + KG+G+VTF
Sbjct: 22 FRHLFLRRITSKIFVKGLAFSTTEEKLAEAFSQYGNVVKADIVLNKAKKRCKGFGYVTFA 81
Query: 66 DPESARRA 73
+ E AR+A
Sbjct: 82 EEEEARKA 89
>Medtr3g080130.1 | RNA-binding (RRM/RBD/RNP motif) family protein
| HC | chr3:36253866-36255120 | 20130731
Length = 135
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 39/58 (67%)
Query: 16 TKVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDPESARRA 73
K+FVGGL+W + ++ F FGD+ E I+ DK++ +++G+GFV F + ++A+ A
Sbjct: 36 NKLFVGGLSWSVDEKSLKDAFSSFGDVTEVRIVYDKDSGRARGFGFVIFSNEDAAKSA 93
>Medtr8g076100.1 | heterogeneous nuclear ribonucleoprotein | HC |
chr8:32212286-32219222 | 20130731
Length = 989
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 48/70 (68%), Gaps = 1/70 (1%)
Query: 17 KVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDPESARRACAD 76
++FVGGL +T E+++ F++ G++LE + + +T+K++GY V F + E A++A ++
Sbjct: 419 EIFVGGLDRDTTEEDLKKIFQRIGEVLEVRLHKNSSTSKNRGYAVVRFANKEHAKKALSE 478
Query: 77 -PNPIIDGRR 85
NP+I G+R
Sbjct: 479 MKNPVIRGKR 488
>Medtr7g118120.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:49025533-49031900 | 20130731
Length = 479
Score = 58.2 bits (139), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 46/78 (58%), Gaps = 1/78 (1%)
Query: 16 TKVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDPESARRACA 75
++VF+GGL +T +++R E GDI+E +I D+ T +SKGY FV ++ E A++A
Sbjct: 104 SEVFIGGLPRDTSDDDVRELCEPMGDIVEIKLIKDRETGESKGYAFVGYKTKEVAQKAID 163
Query: 76 D-PNPIIDGRRANCNIAS 92
D N G+ C ++
Sbjct: 164 DIHNKEFKGKTLRCLLSE 181
>Medtr7g118120.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:49025533-49031887 | 20130731
Length = 479
Score = 58.2 bits (139), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 46/78 (58%), Gaps = 1/78 (1%)
Query: 16 TKVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDPESARRACA 75
++VF+GGL +T +++R E GDI+E +I D+ T +SKGY FV ++ E A++A
Sbjct: 104 SEVFIGGLPRDTSDDDVRELCEPMGDIVEIKLIKDRETGESKGYAFVGYKTKEVAQKAID 163
Query: 76 D-PNPIIDGRRANCNIAS 92
D N G+ C ++
Sbjct: 164 DIHNKEFKGKTLRCLLSE 181
>Medtr7g118120.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:49025861-49031887 | 20130731
Length = 479
Score = 58.2 bits (139), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 46/78 (58%), Gaps = 1/78 (1%)
Query: 16 TKVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDPESARRACA 75
++VF+GGL +T +++R E GDI+E +I D+ T +SKGY FV ++ E A++A
Sbjct: 104 SEVFIGGLPRDTSDDDVRELCEPMGDIVEIKLIKDRETGESKGYAFVGYKTKEVAQKAID 163
Query: 76 D-PNPIIDGRRANCNIAS 92
D N G+ C ++
Sbjct: 164 DIHNKEFKGKTLRCLLSE 181
>Medtr7g094660.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:37745112-37734961 | 20130731
Length = 865
Score = 57.8 bits (138), Expect = 1e-08, Method: Composition-based stats.
Identities = 27/69 (39%), Positives = 41/69 (59%), Gaps = 1/69 (1%)
Query: 17 KVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDPESARRACAD 76
++FV L + T EE+ +F QFG + +A ++ DK+T +SKG ++ F PE A RA +
Sbjct: 330 RLFVRNLPYSTTEEELEEHFSQFGSVSQAHLVVDKDTKRSKGIAYIHFSAPEFAARALEE 389
Query: 77 P-NPIIDGR 84
N I GR
Sbjct: 390 SDNSIFQGR 398
>Medtr6g004810.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr6:438661-434987 | 20130731
Length = 383
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 41/64 (64%)
Query: 17 KVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDPESARRACAD 76
K+F+GGLA ET + +F ++G+I ++VI+ D+ T + +G+GF+T+ DP + D
Sbjct: 46 KIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFITYADPSVVDKVIED 105
Query: 77 PNPI 80
+ I
Sbjct: 106 SHII 109
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 38/64 (59%)
Query: 17 KVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDPESARRACAD 76
K+FVGG+ +E R +F ++G++ + I+ D +T +S+G+GFVTF E+ +
Sbjct: 134 KIFVGGIPSNVTEDEFRDFFTRYGEVKDHQIMRDHSTNRSRGFGFVTFDTEEAVDDLLSM 193
Query: 77 PNPI 80
N I
Sbjct: 194 GNKI 197
>Medtr2g026180.4 | RNA-binding (RRM/RBD/RNP motif) family protein
| HC | chr2:9464335-9461370 | 20130731
Length = 411
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 37/58 (63%)
Query: 17 KVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDPESARRAC 74
K+FVGGLA + ++YF+QFG I + V++ D NT + +G+GF+T+ E+ +
Sbjct: 37 KIFVGGLASTVTESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVEKVL 94
>Medtr8g007390.3 | heterogeneous nuclear ribonucleoprotein | HC |
chr8:1510737-1506382 | 20130731
Length = 799
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 46/75 (61%), Gaps = 3/75 (4%)
Query: 17 KVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDPESARRACAD 76
+VFVGGL + +++R F + G + E ++ + T K+KG+ F+ F + E A+RA A+
Sbjct: 215 EVFVGGLDKDATEDDLRKVFSEVGVVTEVRLMMNPQTKKNKGFAFLRFENVEQAKRAVAE 274
Query: 77 -PNPIIDGRRANCNI 90
NP+I+G+ C +
Sbjct: 275 LKNPVINGK--QCGV 287
>Medtr8g007390.4 | heterogeneous nuclear ribonucleoprotein | HC |
chr8:1510737-1506382 | 20130731
Length = 799
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 46/75 (61%), Gaps = 3/75 (4%)
Query: 17 KVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDPESARRACAD 76
+VFVGGL + +++R F + G + E ++ + T K+KG+ F+ F + E A+RA A+
Sbjct: 215 EVFVGGLDKDATEDDLRKVFSEVGVVTEVRLMMNPQTKKNKGFAFLRFENVEQAKRAVAE 274
Query: 77 -PNPIIDGRRANCNI 90
NP+I+G+ C +
Sbjct: 275 LKNPVINGK--QCGV 287
>Medtr8g007390.2 | heterogeneous nuclear ribonucleoprotein | HC |
chr8:1510737-1506382 | 20130731
Length = 800
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 46/75 (61%), Gaps = 3/75 (4%)
Query: 17 KVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDPESARRACAD 76
+VFVGGL + +++R F + G + E ++ + T K+KG+ F+ F + E A+RA A+
Sbjct: 216 EVFVGGLDKDATEDDLRKVFSEVGVVTEVRLMMNPQTKKNKGFAFLRFENVEQAKRAVAE 275
Query: 77 -PNPIIDGRRANCNI 90
NP+I+G+ C +
Sbjct: 276 LKNPVINGK--QCGV 288
>Medtr8g007390.1 | heterogeneous nuclear ribonucleoprotein | HC |
chr8:1510737-1506382 | 20130731
Length = 800
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 46/75 (61%), Gaps = 3/75 (4%)
Query: 17 KVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDPESARRACAD 76
+VFVGGL + +++R F + G + E ++ + T K+KG+ F+ F + E A+RA A+
Sbjct: 216 EVFVGGLDKDATEDDLRKVFSEVGVVTEVRLMMNPQTKKNKGFAFLRFENVEQAKRAVAE 275
Query: 77 -PNPIIDGRRANCNI 90
NP+I+G+ C +
Sbjct: 276 LKNPVINGK--QCGV 288
>Medtr2g096560.1 | RNA-binding (RRM/RBD/RNP motif) family protein
| HC | chr2:41240036-41242642 | 20130731
Length = 89
Score = 56.2 bits (134), Expect = 3e-08, Method: Composition-based stats.
Identities = 30/72 (41%), Positives = 47/72 (65%), Gaps = 5/72 (6%)
Query: 16 TKVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFR---DPESARR 72
TK+FV L++ T +++ S F FG + EA +ITD+NT + KG+GFV+++ + E AR+
Sbjct: 7 TKLFVSRLSFYTTQQQLESLFSPFGVLTEATLITDQNTQRPKGFGFVSYKSEIEAEKARK 66
Query: 73 ACADPNPIIDGR 84
A I+DGR
Sbjct: 67 ALN--GRIVDGR 76
>Medtr4g109540.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr4:45527062-45523373 | 20130731
Length = 276
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 48/86 (55%), Gaps = 9/86 (10%)
Query: 16 TKVFVGGL--------AWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDP 67
TK+F+GG+ ++ T +R F ++G++L+A II D+ T +S+G+GF+TF
Sbjct: 42 TKLFIGGILHLSVAGVSYSTDENSLREAFSRYGEVLDARIIMDRETGRSRGFGFITFNSV 101
Query: 68 ESARRAC-ADPNPIIDGRRANCNIAS 92
E A A A + GRR N A+
Sbjct: 102 EEASSAIQALDGQDLHGRRVRVNYAN 127
>Medtr7g094670.1 | mRNA capping enzyme, putative | LC |
chr7:37775862-37750453 | 20130731
Length = 1678
Score = 55.8 bits (133), Expect = 4e-08, Method: Composition-based stats.
Identities = 27/69 (39%), Positives = 40/69 (57%), Gaps = 1/69 (1%)
Query: 17 KVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDPESARRACAD 76
++FV L + T EE+ +F QFG + + ++ DK+T +SKG F+ F PE A RA +
Sbjct: 900 RLFVRNLPYSTTEEELEEHFSQFGSVSQVHLVVDKDTKRSKGRAFIHFSVPEFAARALEE 959
Query: 77 P-NPIIDGR 84
N I GR
Sbjct: 960 SDNSIFQGR 968
>Medtr8g076100.2 | heterogeneous nuclear ribonucleoprotein | HC |
chr8:32212286-32219222 | 20130731
Length = 941
Score = 55.5 bits (132), Expect = 5e-08, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 48/70 (68%), Gaps = 1/70 (1%)
Query: 17 KVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDPESARRACAD 76
++FVGGL +T E+++ F++ G++LE + + +T+K++GY V F + E A++A ++
Sbjct: 419 EIFVGGLDRDTTEEDLKKIFQRIGEVLEVRLHKNSSTSKNRGYAVVRFANKEHAKKALSE 478
Query: 77 -PNPIIDGRR 85
NP+I G+R
Sbjct: 479 MKNPVIRGKR 488
>Medtr1g092860.1 | RNA-binding (RRM/RBD/RNP motif) family protein,
putative | HC | chr1:41816599-41813158 | 20130731
Length = 284
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 49/85 (57%), Gaps = 1/85 (1%)
Query: 8 SQFGDTTFTKVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDP 67
SQ K+FV GL++ T + +R+ FE FG+++E +I DK + +SKGY F+ +
Sbjct: 184 SQEASVKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKVIIDKISKRSKGYAFIEYTTE 243
Query: 68 ESARRACADPN-PIIDGRRANCNIA 91
E+A A + N II+G ++A
Sbjct: 244 EAASAALKEMNGKIINGWMIVVDVA 268
>Medtr8g076100.3 | heterogeneous nuclear ribonucleoprotein | HC |
chr8:32212286-32219222 | 20130731
Length = 941
Score = 55.5 bits (132), Expect = 6e-08, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 48/70 (68%), Gaps = 1/70 (1%)
Query: 17 KVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDPESARRACAD 76
++FVGGL +T E+++ F++ G++LE + + +T+K++GY V F + E A++A ++
Sbjct: 419 EIFVGGLDRDTTEEDLKKIFQRIGEVLEVRLHKNSSTSKNRGYAVVRFANKEHAKKALSE 478
Query: 77 -PNPIIDGRR 85
NP+I G+R
Sbjct: 479 MKNPVIRGKR 488
>Medtr4g052940.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:19205591-19210680 | 20130731
Length = 504
Score = 54.7 bits (130), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 48/74 (64%), Gaps = 1/74 (1%)
Query: 16 TKVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDPESARRACA 75
++V+VGG+ + +E+++ + E+ G++++ I+ K+ +++KG+ FVT+R+ E A +A
Sbjct: 110 SEVYVGGIPLDAKSEDLKEFCERIGEVVQVRIMKGKDASENKGFAFVTYRNVELASKAIE 169
Query: 76 DPNPI-IDGRRANC 88
+ N GR+ C
Sbjct: 170 ELNNTEFKGRKIKC 183
>Medtr4g052940.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:19205591-19210680 | 20130731
Length = 504
Score = 54.7 bits (130), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 48/74 (64%), Gaps = 1/74 (1%)
Query: 16 TKVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDPESARRACA 75
++V+VGG+ + +E+++ + E+ G++++ I+ K+ +++KG+ FVT+R+ E A +A
Sbjct: 110 SEVYVGGIPLDAKSEDLKEFCERIGEVVQVRIMKGKDASENKGFAFVTYRNVELASKAIE 169
Query: 76 DPNPI-IDGRRANC 88
+ N GR+ C
Sbjct: 170 ELNNTEFKGRKIKC 183
>Medtr4g052940.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:19205591-19210680 | 20130731
Length = 504
Score = 54.7 bits (130), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 48/74 (64%), Gaps = 1/74 (1%)
Query: 16 TKVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDPESARRACA 75
++V+VGG+ + +E+++ + E+ G++++ I+ K+ +++KG+ FVT+R+ E A +A
Sbjct: 110 SEVYVGGIPLDAKSEDLKEFCERIGEVVQVRIMKGKDASENKGFAFVTYRNVELASKAIE 169
Query: 76 DPNPI-IDGRRANC 88
+ N GR+ C
Sbjct: 170 ELNNTEFKGRKIKC 183
>Medtr4g052940.4 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:19205591-19210680 | 20130731
Length = 354
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 48/74 (64%), Gaps = 1/74 (1%)
Query: 16 TKVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDPESARRACA 75
++V+VGG+ + +E+++ + E+ G++++ I+ K+ +++KG+ FVT+R+ E A +A
Sbjct: 110 SEVYVGGIPLDAKSEDLKEFCERIGEVVQVRIMKGKDASENKGFAFVTYRNVELASKAIE 169
Query: 76 DPNPI-IDGRRANC 88
+ N GR+ C
Sbjct: 170 ELNNTEFKGRKIKC 183
>Medtr7g099940.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:40168782-40171275 | 20130731
Length = 141
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 49/86 (56%), Gaps = 3/86 (3%)
Query: 1 MAYPHYRSQFGDTTFT--KVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKG 58
+ H+ S ++T T K+F+ GL+ T E++ F FG +LEA +ITD+ + +SKG
Sbjct: 18 LVSSHFTSIRLNSTLTSPKLFISGLSRLTTDEKLTEAFSPFGQLLEAKVITDRGSGRSKG 77
Query: 59 YGFVTFRDPESARRACADPN-PIIDG 83
+ FV++ E A +A N +DG
Sbjct: 78 FAFVSYSTIEEAEKAREGMNAKFLDG 103
>Medtr2g013130.3 | U2 snRNP auxilliary factor, large subunit,
splicing factor | HC | chr2:3477024-3485643 | 20130731
Length = 402
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 38/75 (50%)
Query: 11 GDTTFTKVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDPESA 70
G ++FVGGL + +MR + FG + I+ DK T SKGYGF ++DP
Sbjct: 173 GAEGLDRIFVGGLPYYFTEVQMRELLQAFGPLRSFDIVRDKETGNSKGYGFCIYQDPAVT 232
Query: 71 RRACADPNPIIDGRR 85
ACA N + G +
Sbjct: 233 DIACAALNGLKMGDK 247
>Medtr7g081210.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:30979896-30974591 | 20130731
Length = 782
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Query: 17 KVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDPESARRACAD 76
+VFVGGL E ++R F + G+I E + + T ++KG+ + F E +RA A+
Sbjct: 195 EVFVGGLDKEATEHDLRKVFSKVGEITEVRMTVNPQTKRNKGFALLRFETVEHVKRALAE 254
Query: 77 -PNPIIDGRRANCNI 90
NP+I+G++ I
Sbjct: 255 LKNPVINGKQCGITI 269
>Medtr2g013130.4 | U2 snRNP auxilliary factor, large subunit,
splicing factor | HC | chr2:3477024-3485643 | 20130731
Length = 359
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 38/75 (50%)
Query: 11 GDTTFTKVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDPESA 70
G ++FVGGL + +MR + FG + I+ DK T SKGYGF ++DP
Sbjct: 130 GAEGLDRIFVGGLPYYFTEVQMRELLQAFGPLRSFDIVRDKETGNSKGYGFCIYQDPAVT 189
Query: 71 RRACADPNPIIDGRR 85
ACA N + G +
Sbjct: 190 DIACAALNGLKMGDK 204
>Medtr2g013130.1 | U2 snRNP auxilliary factor, large subunit,
splicing factor | HC | chr2:3475903-3485643 | 20130731
Length = 522
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 38/75 (50%)
Query: 11 GDTTFTKVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDPESA 70
G ++FVGGL + +MR + FG + I+ DK T SKGYGF ++DP
Sbjct: 293 GAEGLDRIFVGGLPYYFTEVQMRELLQAFGPLRSFDIVRDKETGNSKGYGFCIYQDPAVT 352
Query: 71 RRACADPNPIIDGRR 85
ACA N + G +
Sbjct: 353 DIACAALNGLKMGDK 367
>Medtr2g013130.2 | U2 snRNP auxilliary factor, large subunit,
splicing factor | HC | chr2:3475909-3485643 | 20130731
Length = 507
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 38/75 (50%)
Query: 11 GDTTFTKVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDPESA 70
G ++FVGGL + +MR + FG + I+ DK T SKGYGF ++DP
Sbjct: 278 GAEGLDRIFVGGLPYYFTEVQMRELLQAFGPLRSFDIVRDKETGNSKGYGFCIYQDPAVT 337
Query: 71 RRACADPNPIIDGRR 85
ACA N + G +
Sbjct: 338 DIACAALNGLKMGDK 352
>Medtr3g027140.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:8413608-8404220 | 20130731
Length = 235
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 48/88 (54%), Gaps = 5/88 (5%)
Query: 9 QFGDTTFT----KVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTF 64
Q G++TF KV+VG LA ++ ++ +F + G+ L A + T+KS G+GFVTF
Sbjct: 148 QAGESTFVDSPYKVYVGNLAKNVTSDSLKKFFSEKGNALSAKVSRAPGTSKSSGFGFVTF 207
Query: 65 RDPESARRACAD-PNPIIDGRRANCNIA 91
E A + N +++G++ N A
Sbjct: 208 SSDEDVEAAISSFNNALLEGQKIRVNKA 235
>Medtr4g081520.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr4:31628430-31625444 | 20130731
Length = 144
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 37/55 (67%)
Query: 16 TKVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDPESA 70
T +FV GL+ T TE +R F++FG+++ A ++TD+ + SKG+GFV + E A
Sbjct: 51 TNLFVSGLSKRTTTETLREAFQKFGEVVHARVVTDRVSGYSKGFGFVKYATLEDA 105
>Medtr1g045510.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:17072567-17075712 | 20130731
Length = 285
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 17 KVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDPESARRACAD 76
K+FVG LAW +E + F++ G ++ A ++ D T KS+GYGFV++ A A
Sbjct: 205 KLFVGNLAWTVTSESLTQAFQEHGTVVGARVLFDGETGKSRGYGFVSYATKSEMDTALAI 264
Query: 77 PNPI-IDGRRANCNIA 91
+ + ++GR ++A
Sbjct: 265 MDNVELEGRTLRVSLA 280
>Medtr7g010360.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
LC | chr7:2533493-2542856 | 20130731
Length = 752
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 47/78 (60%), Gaps = 8/78 (10%)
Query: 1 MAYPHYRSQFGDTTFTKVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYG 60
++ PH++S+ V+VGG+ + TE+++ + E G++++ I K+ ++++G+
Sbjct: 343 LSLPHHKSE--------VYVGGIPLDAKTEDLKEFCECIGEVVQVRIFKGKDASENRGFA 394
Query: 61 FVTFRDPESARRACADPN 78
FVT+R E A +A + N
Sbjct: 395 FVTYRSIELASKAIKELN 412
>Medtr4g104470.1 | 31 kDa ribonucleoprotein | HC |
chr4:43224367-43221650 | 20130731
Length = 300
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 17 KVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDPESARRACAD 76
K+FVG L ++ +E++ FEQ G + A +I +++T +S+G+GFVT E RA
Sbjct: 123 KIFVGNLPFDVDSEKLAQLFEQSGTVEIAEVIYNRDTDRSRGFGFVTMSTSEEVERAVNK 182
Query: 77 PNPI-IDGRRANCNIAS 92
+ +DGR N A+
Sbjct: 183 FSGFELDGRLLTVNKAA 199
>Medtr6g040070.1 | DEAD/DEAH-box helicase | HC |
chr6:14397151-14388452 | 20130731
Length = 784
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 7 RSQFGDTTFTKVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRD 66
RS+ G FT V+V L E+++ F +G I AVI+ D+N SK +GFV F+
Sbjct: 96 RSENGSPKFTNVYVKNLLETDTDEDLKKLFSTYGVITSAVIMKDEN-GNSKCFGFVNFQS 154
Query: 67 PESARRACADPN 78
P+SA A N
Sbjct: 155 PDSAAAAVEKLN 166
>Medtr1g056520.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr1:24700218-24705084 | 20130731
Length = 311
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Query: 17 KVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDPESARRACAD 76
K++ G L W+ ++ +R F + +L A ++ ++N KS+GYGFV+F E A +
Sbjct: 208 KIYAGNLGWDMTSQYLRKAFAKQPGLLSAKVVYERNNGKSRGYGFVSFETAEDVEVALSA 267
Query: 77 PNPI-IDGRRANCNIA 91
N + + GR +A
Sbjct: 268 MNGVEVQGRPLRLKLA 283
>Medtr1g056520.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr1:24700221-24703822 | 20130731
Length = 311
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Query: 17 KVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDPESARRACAD 76
K++ G L W+ ++ +R F + +L A ++ ++N KS+GYGFV+F E A +
Sbjct: 208 KIYAGNLGWDMTSQYLRKAFAKQPGLLSAKVVYERNNGKSRGYGFVSFETAEDVEVALSA 267
Query: 77 PNPI-IDGRRANCNIA 91
N + + GR +A
Sbjct: 268 MNGVEVQGRPLRLKLA 283
>Medtr3g075500.1 | 31 kDa ribonucleoprotein | HC |
chr3:34381451-34378914 | 20130731
Length = 291
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Query: 17 KVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDPESARRACAD 76
+++V LAWE + F + G I+ A ++ D+ T +S+G+GFVT D A A
Sbjct: 207 RIYVANLAWEVDNSRLEQVFSEHGKIVSARVVYDRETGRSRGFGFVTMSDETEMNDAIAA 266
Query: 77 PN-PIIDGRRANCNIA 91
+ ++GR ++A
Sbjct: 267 LDGQSLEGRTIRVSVA 282
>Medtr1g064230.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:28254735-28256581 | 20130731
Length = 280
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 31/49 (63%)
Query: 16 TKVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTF 64
+V VG LAW + S F + G +LEA +I D+ + +S+G+GFVTF
Sbjct: 196 NRVHVGNLAWGVDNLALESLFGEQGQVLEAKVIYDRESGRSRGFGFVTF 244
>Medtr1g064230.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:28254735-28256581 | 20130731
Length = 280
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 31/49 (63%)
Query: 16 TKVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTF 64
+V VG LAW + S F + G +LEA +I D+ + +S+G+GFVTF
Sbjct: 196 NRVHVGNLAWGVDNLALESLFGEQGQVLEAKVIYDRESGRSRGFGFVTF 244
>Medtr3g014000.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:3865418-3863915 | 20130731
Length = 138
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 45/83 (54%), Gaps = 12/83 (14%)
Query: 18 VFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDPESARRAC--- 74
+F+GG+++ T +R +F +G +L+A II D+ T + +G+GFVTF E A A
Sbjct: 36 LFLGGISYNT----LRKHFSLYGKVLDAKIIRDRETGRPRGFGFVTFATTEEASAALQTM 91
Query: 75 -----ADPNPIIDGRRANCNIAS 92
+ N + GR+ N A+
Sbjct: 92 SLAIKSMKNQDLYGRKVRVNYAT 114
>Medtr5g017280.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:6293125-6297976 | 20130731
Length = 397
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 35/64 (54%)
Query: 17 KVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDPESARRACAD 76
K+FVG L E +E++R YF +FG I + I D +G+GFVTF D A R
Sbjct: 226 KIFVGRLPPEANSEDLRQYFGRFGRIEDVYIPRDPKRTGHRGFGFVTFADEGVADRVSLR 285
Query: 77 PNPI 80
P+ I
Sbjct: 286 PHEI 289
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 46/76 (60%), Gaps = 1/76 (1%)
Query: 17 KVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDPESARRACAD 76
K+ V G+ W+ TE ++ Y ++G++ + +++ +++T +S+G+G+VTF + A+ +
Sbjct: 5 KLVVLGIPWDVDTEGLKEYMSKYGELEDCIVMKERSTGRSRGFGYVTFASVDDAKEVLSG 64
Query: 77 PNPIIDGRRANCNIAS 92
+ + D R +A+
Sbjct: 65 EHVLGD-RMLEVKVAT 79
>Medtr5g017280.3 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:6293125-6297976 | 20130731
Length = 397
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 35/64 (54%)
Query: 17 KVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDPESARRACAD 76
K+FVG L E +E++R YF +FG I + I D +G+GFVTF D A R
Sbjct: 226 KIFVGRLPPEANSEDLRQYFGRFGRIEDVYIPRDPKRTGHRGFGFVTFADEGVADRVSLR 285
Query: 77 PNPI 80
P+ I
Sbjct: 286 PHEI 289
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 46/76 (60%), Gaps = 1/76 (1%)
Query: 17 KVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDPESARRACAD 76
K+ V G+ W+ TE ++ Y ++G++ + +++ +++T +S+G+G+VTF + A+ +
Sbjct: 5 KLVVLGIPWDVDTEGLKEYMSKYGELEDCIVMKERSTGRSRGFGYVTFASVDDAKEVLSG 64
Query: 77 PNPIIDGRRANCNIAS 92
+ + D R +A+
Sbjct: 65 EHVLGD-RMLEVKVAT 79
>Medtr5g017280.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:6293125-6298060 | 20130731
Length = 397
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 35/64 (54%)
Query: 17 KVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDPESARRACAD 76
K+FVG L E +E++R YF +FG I + I D +G+GFVTF D A R
Sbjct: 226 KIFVGRLPPEANSEDLRQYFGRFGRIEDVYIPRDPKRTGHRGFGFVTFADEGVADRVSLR 285
Query: 77 PNPI 80
P+ I
Sbjct: 286 PHEI 289
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 46/76 (60%), Gaps = 1/76 (1%)
Query: 17 KVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDPESARRACAD 76
K+ V G+ W+ TE ++ Y ++G++ + +++ +++T +S+G+G+VTF + A+ +
Sbjct: 5 KLVVLGIPWDVDTEGLKEYMSKYGELEDCIVMKERSTGRSRGFGYVTFASVDDAKEVLSG 64
Query: 77 PNPIIDGRRANCNIAS 92
+ + D R +A+
Sbjct: 65 EHVLGD-RMLEVKVAT 79
>Medtr7g106440.1 | 33 kDa ribonucleoprotein | HC |
chr7:43324307-43322087 | 20130731
Length = 318
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 17 KVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDPESARRACAD 76
K++ G L W ++++R F++ +L A II +++ +S+G+GFVTF E A
Sbjct: 213 KIYAGNLGWGMNSQDLRDAFDEQPGLLGAKIIYERDNGRSRGFGFVTFETAEHLEAALNA 272
Query: 77 PNPI-IDGRRANCNIAS 92
N + + GR N+A+
Sbjct: 273 MNGVEVQGRPLRLNLAA 289
>Medtr5g017280.4 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:6293125-6298060 | 20130731
Length = 373
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 35/64 (54%)
Query: 17 KVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDPESARRACAD 76
K+FVG L E +E++R YF +FG I + I D +G+GFVTF D A R
Sbjct: 226 KIFVGRLPPEANSEDLRQYFGRFGRIEDVYIPRDPKRTGHRGFGFVTFADEGVADRVSLR 285
Query: 77 PNPI 80
P+ I
Sbjct: 286 PHEI 289
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 46/76 (60%), Gaps = 1/76 (1%)
Query: 17 KVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDPESARRACAD 76
K+ V G+ W+ TE ++ Y ++G++ + +++ +++T +S+G+G+VTF + A+ +
Sbjct: 5 KLVVLGIPWDVDTEGLKEYMSKYGELEDCIVMKERSTGRSRGFGYVTFASVDDAKEVLSG 64
Query: 77 PNPIIDGRRANCNIAS 92
+ + D R +A+
Sbjct: 65 EHVLGD-RMLEVKVAT 79
>Medtr3g075500.2 | 31 kDa ribonucleoprotein | HC |
chr3:34381440-34379306 | 20130731
Length = 271
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 32/59 (54%)
Query: 17 KVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDPESARRACA 75
+++V LAWE + F + G I+ A ++ D+ T +S+G+GFVT D A A
Sbjct: 207 RIYVANLAWEVDNSRLEQVFSEHGKIVSARVVYDRETGRSRGFGFVTMSDETEMNDAIA 265
>Medtr7g096260.1 | multiple RNA-binding domain protein | HC |
chr7:38601352-38612085 | 20130731
Length = 709
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 45/85 (52%), Gaps = 3/85 (3%)
Query: 1 MAYPHYRSQFGDTTFTKVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYG 60
++ P Y+ G + ++FV L + T EE+ +F QFG + + ++ + T +SKG
Sbjct: 165 LSNPEYKK--GVSEPCRLFVLNLPYSTTEEELEEHFSQFGSVSQVHLLVHEVTKRSKGIA 222
Query: 61 FVTFRDPESARRACADP-NPIIDGR 84
F+ F PE A RA + N I GR
Sbjct: 223 FIHFSVPEFAARALEESNNSIFQGR 247
>Medtr7g096260.2 | multiple RNA-binding domain protein | HC |
chr7:38600263-38612243 | 20130731
Length = 723
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 45/85 (52%), Gaps = 3/85 (3%)
Query: 1 MAYPHYRSQFGDTTFTKVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYG 60
++ P Y+ G + ++FV L + T EE+ +F QFG + + ++ + T +SKG
Sbjct: 179 LSNPEYKK--GVSEPCRLFVLNLPYSTTEEELEEHFSQFGSVSQVHLLVHEVTKRSKGIA 236
Query: 61 FVTFRDPESARRACADP-NPIIDGR 84
F+ F PE A RA + N I GR
Sbjct: 237 FIHFSVPEFAARALEESNNSIFQGR 261