Miyakogusa Predicted Gene
- Lj0g3v0343589.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0343589.1 Non Chatacterized Hit- tr|I1MAU7|I1MAU7_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.25850 PE,80.65,0,RRM,RNA
recognition motif domain; RNA recognition motif,RNA recognition motif
domain; seg,NULL; RNA-,CUFF.23571.1
(269 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G78260.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 165 2e-41
AT1G78260.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 164 6e-41
AT1G20880.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 161 5e-40
AT1G20880.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 161 5e-40
AT1G76460.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 161 5e-40
AT1G22330.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 160 7e-40
AT1G33470.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 141 6e-34
AT1G33470.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 141 6e-34
AT1G22910.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 140 1e-33
AT1G22910.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 139 2e-33
AT1G22910.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 139 2e-33
AT2G46780.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 136 2e-32
AT3G54770.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 129 3e-30
AT5G11412.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 122 3e-28
AT5G53680.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 107 6e-24
AT3G06970.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 97 9e-21
AT5G53720.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 97 1e-20
AT3G54770.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 95 5e-20
AT4G26650.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 80 2e-15
AT4G26650.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 80 2e-15
AT5G55550.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 79 4e-15
AT5G55550.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 79 4e-15
AT5G55550.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 79 4e-15
AT5G55550.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 79 4e-15
AT5G47620.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 79 4e-15
AT5G47620.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 79 4e-15
AT5G47620.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 79 5e-15
AT3G15010.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 79 5e-15
AT3G15010.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 79 5e-15
AT2G22090.2 | Symbols: UBA1A | RNA-binding (RRM/RBD/RNP motifs) ... 78 8e-15
AT2G22090.1 | Symbols: UBA1A | RNA-binding (RRM/RBD/RNP motifs) ... 77 9e-15
AT4G39260.3 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold, circa... 74 8e-14
AT4G39260.2 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold, circa... 74 8e-14
AT4G39260.1 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold, circa... 74 8e-14
AT3G07810.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 72 4e-13
AT3G07810.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 72 4e-13
AT4G39260.4 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold, circa... 71 6e-13
AT2G19380.1 | Symbols: | RNA recognition motif (RRM)-containing... 70 1e-12
AT3G56860.5 | Symbols: UBA2A | UBP1-associated protein 2A | chr3... 70 1e-12
AT3G56860.4 | Symbols: UBA2A | UBP1-associated protein 2A | chr3... 70 1e-12
AT3G56860.2 | Symbols: UBA2A | UBP1-associated protein 2A | chr3... 70 1e-12
AT3G56860.1 | Symbols: UBA2A | UBP1-associated protein 2A | chr3... 70 1e-12
AT3G56860.3 | Symbols: UBA2A | UBP1-associated protein 2A | chr3... 70 1e-12
AT2G41060.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 70 2e-12
AT2G41060.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 70 2e-12
AT2G21660.2 | Symbols: ATGRP7, CCR2 | cold, circadian rhythm, an... 69 4e-12
AT2G21660.1 | Symbols: ATGRP7, CCR2, GR-RBP7, GRP7 | cold, circa... 69 4e-12
AT2G22100.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 68 6e-12
AT1G17640.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 68 7e-12
AT4G13850.4 | Symbols: ATGRP2 | glycine-rich RNA-binding protein... 68 7e-12
AT4G13850.3 | Symbols: ATGRP2 | glycine-rich RNA-binding protein... 68 8e-12
AT4G13850.2 | Symbols: ATGRP2 | glycine-rich RNA-binding protein... 68 8e-12
AT4G13850.1 | Symbols: ATGRP2, GR-RBP2, GRP2 | glycine-rich RNA-... 68 8e-12
AT4G14300.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 67 1e-11
AT3G23830.2 | Symbols: GR-RBP4, GRP4 | glycine-rich RNA-binding ... 67 1e-11
AT3G23830.1 | Symbols: GR-RBP4, GRP4 | glycine-rich RNA-binding ... 67 1e-11
AT2G33410.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 65 5e-11
AT3G26420.1 | Symbols: ATRZ-1A | RNA-binding (RRM/RBD/RNP motifs... 61 7e-10
AT1G74230.1 | Symbols: GR-RBP5 | glycine-rich RNA-binding protei... 61 7e-10
AT1G18630.1 | Symbols: GR-RBP6 | glycine-rich RNA-binding protei... 60 2e-09
AT1G58470.1 | Symbols: ATRBP1, RBP1 | RNA-binding protein 1 | ch... 60 2e-09
AT5G40490.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 59 2e-09
AT5G61030.1 | Symbols: GR-RBP3 | glycine-rich RNA-binding protei... 59 5e-09
AT2G37510.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 58 6e-09
AT3G13224.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 57 1e-08
AT5G04280.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 57 1e-08
AT1G60650.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 57 1e-08
AT1G60650.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 57 1e-08
AT3G13224.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 57 2e-08
AT4G36960.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 55 5e-08
AT4G36960.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 55 5e-08
AT5G06210.1 | Symbols: | RNA binding (RRM/RBD/RNP motifs) famil... 55 7e-08
AT3G52380.1 | Symbols: CP33, PDE322 | chloroplast RNA-binding pr... 54 8e-08
AT4G00830.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 54 1e-07
AT4G00830.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 54 1e-07
AT3G20930.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 54 1e-07
AT5G47620.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 54 1e-07
AT4G00830.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 54 1e-07
AT4G00830.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 54 1e-07
AT4G34110.1 | Symbols: PAB2, PABP2, ATPAB2 | poly(A) binding pro... 54 1e-07
AT4G24770.1 | Symbols: RBP31, ATRBP31, CP31, ATRBP33 | 31-kDa RN... 54 2e-07
AT3G46020.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 53 2e-07
AT4G16280.3 | Symbols: FCA | RNA binding;abscisic acid binding |... 53 3e-07
AT4G16280.4 | Symbols: | RNA binding;abscisic acid binding | ch... 53 3e-07
AT4G16280.2 | Symbols: FCA | RNA binding;abscisic acid binding |... 52 3e-07
AT5G54580.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 52 3e-07
AT5G08695.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 52 4e-07
AT2G27330.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 52 4e-07
AT2G23350.1 | Symbols: PAB4, PABP4 | poly(A) binding protein 4 |... 51 7e-07
AT3G08000.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 51 7e-07
AT3G53460.3 | Symbols: CP29 | chloroplast RNA-binding protein 29... 51 7e-07
AT3G53460.2 | Symbols: CP29 | chloroplast RNA-binding protein 29... 51 7e-07
AT3G53460.1 | Symbols: CP29 | chloroplast RNA-binding protein 29... 51 7e-07
AT3G53460.4 | Symbols: CP29 | chloroplast RNA-binding protein 29... 51 7e-07
AT2G37220.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 51 1e-06
AT1G60000.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 50 1e-06
AT5G47320.1 | Symbols: RPS19 | ribosomal protein S19 | chr5:1920... 50 1e-06
AT2G21690.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 50 1e-06
AT5G50250.1 | Symbols: CP31B | chloroplast RNA-binding protein 3... 50 2e-06
AT4G13860.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 50 2e-06
AT1G71800.1 | Symbols: CSTF64 | cleavage stimulating factor 64 |... 49 3e-06
AT1G73530.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 49 5e-06
AT1G60900.1 | Symbols: | U2 snRNP auxilliary factor, large subu... 49 5e-06
>AT1G78260.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:29447317-29450181 FORWARD LENGTH=287
Length = 287
Score = 165 bits (418), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 74/89 (83%), Positives = 82/89 (92%)
Query: 5 HYRSQFGDTTFTKVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTF 64
+YRS FGDTT+TKVFVGGLAWETPT+EMR YFEQFG+ILEAVIITDKNT KSKGYGFVTF
Sbjct: 6 YYRSPFGDTTYTKVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTF 65
Query: 65 RDPESARRACADPNPIIDGRRANCNIASL 93
R+ +SA RA ADPNP+IDGR+ANCNIAS
Sbjct: 66 RESDSATRAVADPNPVIDGRKANCNIASF 94
>AT1G78260.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:29447317-29449246 FORWARD LENGTH=271
Length = 271
Score = 164 bits (415), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 74/89 (83%), Positives = 82/89 (92%)
Query: 5 HYRSQFGDTTFTKVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTF 64
+YRS FGDTT+TKVFVGGLAWETPT+EMR YFEQFG+ILEAVIITDKNT KSKGYGFVTF
Sbjct: 6 YYRSPFGDTTYTKVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTF 65
Query: 65 RDPESARRACADPNPIIDGRRANCNIASL 93
R+ +SA RA ADPNP+IDGR+ANCNIAS
Sbjct: 66 RESDSATRAVADPNPVIDGRKANCNIASF 94
>AT1G20880.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:7262879-7264834 REVERSE LENGTH=274
Length = 274
Score = 161 bits (407), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 72/90 (80%), Positives = 81/90 (90%), Gaps = 1/90 (1%)
Query: 5 HY-RSQFGDTTFTKVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVT 63
HY S FGDTTFTKVFVGGLAWET +E +R +F+Q+GDILEAV+ITDKNT +SKGYGFVT
Sbjct: 12 HYLNSPFGDTTFTKVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVT 71
Query: 64 FRDPESARRACADPNPIIDGRRANCNIASL 93
FRDPE+ARRAC DP PIIDGRRANCN+ASL
Sbjct: 72 FRDPEAARRACVDPTPIIDGRRANCNLASL 101
>AT1G20880.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:7262879-7264834 REVERSE LENGTH=274
Length = 274
Score = 161 bits (407), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 72/90 (80%), Positives = 81/90 (90%), Gaps = 1/90 (1%)
Query: 5 HY-RSQFGDTTFTKVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVT 63
HY S FGDTTFTKVFVGGLAWET +E +R +F+Q+GDILEAV+ITDKNT +SKGYGFVT
Sbjct: 12 HYLNSPFGDTTFTKVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVT 71
Query: 64 FRDPESARRACADPNPIIDGRRANCNIASL 93
FRDPE+ARRAC DP PIIDGRRANCN+ASL
Sbjct: 72 FRDPEAARRACVDPTPIIDGRRANCNLASL 101
>AT1G76460.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:28686932-28688506 REVERSE LENGTH=285
Length = 285
Score = 161 bits (407), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 72/90 (80%), Positives = 81/90 (90%), Gaps = 1/90 (1%)
Query: 5 HY-RSQFGDTTFTKVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVT 63
HY S FGDTTFTKVFVGGLAWET +E +R +FEQ+G+ILEAV+I DKNT +SKGYGFVT
Sbjct: 12 HYLNSPFGDTTFTKVFVGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGRSKGYGFVT 71
Query: 64 FRDPESARRACADPNPIIDGRRANCNIASL 93
FRDPE+ARRACADP PIIDGRRANCN+ASL
Sbjct: 72 FRDPEAARRACADPTPIIDGRRANCNLASL 101
>AT1G22330.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:7886693-7889241 FORWARD LENGTH=291
Length = 291
Score = 160 bits (406), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 73/89 (82%), Positives = 80/89 (89%)
Query: 5 HYRSQFGDTTFTKVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTF 64
+YRS FGDTT TKVFVGGLAWETPT+EMR YF+QFG+ILEAVIITDK T KSKGYGFVTF
Sbjct: 6 YYRSPFGDTTHTKVFVGGLAWETPTDEMRRYFDQFGEILEAVIITDKATGKSKGYGFVTF 65
Query: 65 RDPESARRACADPNPIIDGRRANCNIASL 93
RD +SA RA ADPNP+IDGR+ANCNIAS
Sbjct: 66 RDSDSATRAVADPNPVIDGRKANCNIASF 94
>AT1G33470.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:12144632-12146040 FORWARD LENGTH=245
Length = 245
Score = 141 bits (355), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 60/82 (73%), Positives = 73/82 (89%)
Query: 12 DTTFTKVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDPESAR 71
DTTFTKVFVGGLAWET +R+YFEQFGDI+EAV+ITDK++ +SKGYGFVTF DPE+A+
Sbjct: 3 DTTFTKVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQ 62
Query: 72 RACADPNPIIDGRRANCNIASL 93
+AC DP P+IDGRRANCN+A+
Sbjct: 63 KACVDPAPVIDGRRANCNLAAF 84
>AT1G33470.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:12144632-12146040 FORWARD LENGTH=244
Length = 244
Score = 141 bits (355), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 60/82 (73%), Positives = 73/82 (89%)
Query: 12 DTTFTKVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDPESAR 71
DTTFTKVFVGGLAWET +R+YFEQFGDI+EAV+ITDK++ +SKGYGFVTF DPE+A+
Sbjct: 3 DTTFTKVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQ 62
Query: 72 RACADPNPIIDGRRANCNIASL 93
+AC DP P+IDGRRANCN+A+
Sbjct: 63 KACVDPAPVIDGRRANCNLAAF 84
>AT1G22910.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:8105808-8107949 FORWARD LENGTH=347
Length = 347
Score = 140 bits (352), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 61/84 (72%), Positives = 72/84 (85%)
Query: 10 FGDTTFTKVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDPES 69
GDTT+TKVFVGGLAWET E M+ +FEQFG+ILEAV+ITDK + +SKGYGFVTFR+ E+
Sbjct: 7 LGDTTYTKVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEA 66
Query: 70 ARRACADPNPIIDGRRANCNIASL 93
AR AC D P+IDGRRANCN+ASL
Sbjct: 67 ARSACVDATPVIDGRRANCNLASL 90
>AT1G22910.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:8105808-8107618 FORWARD LENGTH=242
Length = 242
Score = 139 bits (351), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 61/84 (72%), Positives = 72/84 (85%)
Query: 10 FGDTTFTKVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDPES 69
GDTT+TKVFVGGLAWET E M+ +FEQFG+ILEAV+ITDK + +SKGYGFVTFR+ E+
Sbjct: 7 LGDTTYTKVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEA 66
Query: 70 ARRACADPNPIIDGRRANCNIASL 93
AR AC D P+IDGRRANCN+ASL
Sbjct: 67 ARSACVDATPVIDGRRANCNLASL 90
>AT1G22910.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:8105808-8107659 FORWARD LENGTH=249
Length = 249
Score = 139 bits (350), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 61/84 (72%), Positives = 72/84 (85%)
Query: 10 FGDTTFTKVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDPES 69
GDTT+TKVFVGGLAWET E M+ +FEQFG+ILEAV+ITDK + +SKGYGFVTFR+ E+
Sbjct: 7 LGDTTYTKVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEA 66
Query: 70 ARRACADPNPIIDGRRANCNIASL 93
AR AC D P+IDGRRANCN+ASL
Sbjct: 67 ARSACVDATPVIDGRRANCNLASL 90
>AT2G46780.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:19229516-19231043 FORWARD LENGTH=336
Length = 336
Score = 136 bits (342), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 58/82 (70%), Positives = 70/82 (85%)
Query: 12 DTTFTKVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDPESAR 71
DT TK+FVGGLAWET + MR YFEQFG+I+EAV+ITDKNT +SKGYGFVTF++ E+A
Sbjct: 18 DTKLTKIFVGGLAWETQRDTMRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFKEAEAAM 77
Query: 72 RACADPNPIIDGRRANCNIASL 93
RAC + NP+IDGRRANCN+A L
Sbjct: 78 RACQNMNPVIDGRRANCNLACL 99
>AT3G54770.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:20273863-20275827 REVERSE LENGTH=261
Length = 261
Score = 129 bits (323), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 58/84 (69%), Positives = 69/84 (82%)
Query: 10 FGDTTFTKVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDPES 69
FGDT TKVFVGGLAW+T E M +F ++GDILEAVII+DK T +SKGYGFVTF+D ++
Sbjct: 11 FGDTKLTKVFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGYGFVTFKDAKA 70
Query: 70 ARRACADPNPIIDGRRANCNIASL 93
A RAC D PII+GRRANCN+ASL
Sbjct: 71 ATRACEDSTPIINGRRANCNLASL 94
>AT5G11412.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:3640349-3640876 REVERSE LENGTH=175
Length = 175
Score = 122 bits (305), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 52/87 (59%), Positives = 67/87 (77%)
Query: 5 HYRSQFGDTTFTKVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTF 64
HY ++ DT +TK++VGGL WET E +RSYFEQFGDI+ ++ D+ T +S+GYGFVTF
Sbjct: 41 HYANENVDTRYTKIYVGGLPWETRNEGLRSYFEQFGDIIHVNMVCDRETGRSEGYGFVTF 100
Query: 65 RDPESARRACADPNPIIDGRRANCNIA 91
RD ESA RAC +P P+IDGR A CN+A
Sbjct: 101 RDAESATRACQNPKPVIDGREAKCNLA 127
>AT5G53680.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:21798382-21799109 FORWARD LENGTH=169
Length = 169
Score = 107 bits (268), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 46/87 (52%), Positives = 64/87 (73%), Gaps = 1/87 (1%)
Query: 5 HYRSQFGDTTFTKVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTF 64
H+ F DTTFTK++VGGL W T E + ++F++FG+I+ ++ D+ T +S+GYGFVTF
Sbjct: 3 HHHQNF-DTTFTKIYVGGLPWTTRKEGLINFFKRFGEIIHVNVVCDRETDRSQGYGFVTF 61
Query: 65 RDPESARRACADPNPIIDGRRANCNIA 91
+D ESA RAC DPNP I+GR NC +A
Sbjct: 62 KDAESATRACKDPNPTIEGRITNCKLA 88
>AT3G06970.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:2199653-2201150 REVERSE LENGTH=317
Length = 317
Score = 97.4 bits (241), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 42/81 (51%), Positives = 57/81 (70%)
Query: 12 DTTFTKVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDPESAR 71
DT TK+FVG L W T +++R YFEQFG +++A ++++ +SKGYGF+TFRD S
Sbjct: 8 DTRVTKIFVGNLTWRTTADDLRRYFEQFGQVVDANVVSETYPGRSKGYGFITFRDYVSTV 67
Query: 72 RACADPNPIIDGRRANCNIAS 92
RA + PIIDGR NCN+AS
Sbjct: 68 RALQNSKPIIDGRTTNCNLAS 88
>AT5G53720.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:21806622-21807012 FORWARD LENGTH=100
Length = 100
Score = 97.1 bits (240), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 47/93 (50%), Positives = 63/93 (67%), Gaps = 7/93 (7%)
Query: 1 MAYPHYRSQFGDTTFTKVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYG 60
M++P+ R TK++V GL W T TE + SYFE+FG+I+ A ++ D T +SKG+G
Sbjct: 1 MSHPNDRE-------TKIYVAGLPWITRTEGLISYFERFGEIVYAKVVCDGATQRSKGFG 53
Query: 61 FVTFRDPESARRACADPNPIIDGRRANCNIASL 93
FVTFR+ ESA RAC +PN IDGR NC +A L
Sbjct: 54 FVTFREVESATRACENPNHTIDGRTVNCKLAYL 86
>AT3G54770.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:20273863-20275731 REVERSE LENGTH=218
Length = 218
Score = 94.7 bits (234), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 42/62 (67%), Positives = 52/62 (83%)
Query: 32 MRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDPESARRACADPNPIIDGRRANCNIA 91
M +F ++GDILEAVII+DK T +SKGYGFVTF+D ++A RAC D PII+GRRANCN+A
Sbjct: 1 MYDHFIKYGDILEAVIISDKLTRRSKGYGFVTFKDAKAATRACEDSTPIINGRRANCNLA 60
Query: 92 SL 93
SL
Sbjct: 61 SL 62
>AT4G26650.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:13445265-13447592 FORWARD LENGTH=452
Length = 452
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 51/72 (70%), Gaps = 1/72 (1%)
Query: 13 TTFTKVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDPESARR 72
+ K+F+GG++W+T E ++ YF ++GD++EAVI+ D+ T +++G+GF+ F DP A R
Sbjct: 9 SDLGKLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSVAER 68
Query: 73 ACADPNPIIDGR 84
D + IIDGR
Sbjct: 69 VIMDKH-IIDGR 79
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 39/70 (55%)
Query: 1 MAYPHYRSQFGDTTFTKVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYG 60
+ P + G K+FVGGL E ++YF+QFG I + V++ D NT + +G+G
Sbjct: 104 LISPSHGGNGGGARTKKIFVGGLPSSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFG 163
Query: 61 FVTFRDPESA 70
F+TF ES
Sbjct: 164 FITFDSEESV 173
>AT4G26650.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:13445552-13447592 FORWARD LENGTH=455
Length = 455
Score = 79.7 bits (195), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 51/72 (70%), Gaps = 1/72 (1%)
Query: 13 TTFTKVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDPESARR 72
+ K+F+GG++W+T E ++ YF ++GD++EAVI+ D+ T +++G+GF+ F DP A R
Sbjct: 12 SDLGKLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSVAER 71
Query: 73 ACADPNPIIDGR 84
D + IIDGR
Sbjct: 72 VIMDKH-IIDGR 82
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 39/70 (55%)
Query: 1 MAYPHYRSQFGDTTFTKVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYG 60
+ P + G K+FVGGL E ++YF+QFG I + V++ D NT + +G+G
Sbjct: 107 LISPSHGGNGGGARTKKIFVGGLPSSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFG 166
Query: 61 FVTFRDPESA 70
F+TF ES
Sbjct: 167 FITFDSEESV 176
>AT5G55550.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:22502077-22503658 REVERSE LENGTH=448
Length = 448
Score = 79.0 bits (193), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 51/73 (69%), Gaps = 1/73 (1%)
Query: 12 DTTFTKVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDPESAR 71
++ K+F+GG++W+T E +R YF +GD++EAVI+ D+ T +++G+GF+ F DP +
Sbjct: 2 ESDLGKLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSE 61
Query: 72 RACADPNPIIDGR 84
R D + IIDGR
Sbjct: 62 RVIMDKH-IIDGR 73
Score = 58.5 bits (140), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 37/58 (63%)
Query: 17 KVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDPESARRAC 74
K+FVGGL EE ++YF+QFG I + V++ D NT + +G+GF+TF ++ R
Sbjct: 111 KIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVL 168
>AT5G55550.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:22502077-22503658 REVERSE LENGTH=448
Length = 448
Score = 79.0 bits (193), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 51/73 (69%), Gaps = 1/73 (1%)
Query: 12 DTTFTKVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDPESAR 71
++ K+F+GG++W+T E +R YF +GD++EAVI+ D+ T +++G+GF+ F DP +
Sbjct: 2 ESDLGKLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSE 61
Query: 72 RACADPNPIIDGR 84
R D + IIDGR
Sbjct: 62 RVIMDKH-IIDGR 73
Score = 58.5 bits (140), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 37/58 (63%)
Query: 17 KVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDPESARRAC 74
K+FVGGL EE ++YF+QFG I + V++ D NT + +G+GF+TF ++ R
Sbjct: 111 KIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVL 168
>AT5G55550.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:22502135-22503658 REVERSE LENGTH=460
Length = 460
Score = 78.6 bits (192), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 51/73 (69%), Gaps = 1/73 (1%)
Query: 12 DTTFTKVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDPESAR 71
++ K+F+GG++W+T E +R YF +GD++EAVI+ D+ T +++G+GF+ F DP +
Sbjct: 2 ESDLGKLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSE 61
Query: 72 RACADPNPIIDGR 84
R D + IIDGR
Sbjct: 62 RVIMDKH-IIDGR 73
Score = 58.5 bits (140), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 37/58 (63%)
Query: 17 KVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDPESARRAC 74
K+FVGGL EE ++YF+QFG I + V++ D NT + +G+GF+TF ++ R
Sbjct: 111 KIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVL 168
>AT5G55550.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:22502135-22503658 REVERSE LENGTH=460
Length = 460
Score = 78.6 bits (192), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 51/73 (69%), Gaps = 1/73 (1%)
Query: 12 DTTFTKVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDPESAR 71
++ K+F+GG++W+T E +R YF +GD++EAVI+ D+ T +++G+GF+ F DP +
Sbjct: 2 ESDLGKLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSE 61
Query: 72 RACADPNPIIDGR 84
R D + IIDGR
Sbjct: 62 RVIMDKH-IIDGR 73
Score = 58.5 bits (140), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 37/58 (63%)
Query: 17 KVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDPESARRAC 74
K+FVGGL EE ++YF+QFG I + V++ D NT + +G+GF+TF ++ R
Sbjct: 111 KIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVL 168
>AT5G47620.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:19302548-19304278 REVERSE LENGTH=431
Length = 431
Score = 78.6 bits (192), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 48/68 (70%), Gaps = 1/68 (1%)
Query: 17 KVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDPESARRACAD 76
K+F+GG++WET + +R YF FG++LEAVI+ D+ T +++G+GFV F DP A R
Sbjct: 7 KLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVVLL 66
Query: 77 PNPIIDGR 84
+ IIDG+
Sbjct: 67 KH-IIDGK 73
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 42/81 (51%)
Query: 11 GDTTFTKVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDPESA 70
G + K+FVGGLA E + YF QFG I + V++ D T + +G+GF+++ E+
Sbjct: 101 GPSNSKKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAV 160
Query: 71 RRACADPNPIIDGRRANCNIA 91
+ ++G+ +A
Sbjct: 161 DKVLQKTFHELNGKMVEVKLA 181
>AT5G47620.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:19302548-19304278 REVERSE LENGTH=431
Length = 431
Score = 78.6 bits (192), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 48/68 (70%), Gaps = 1/68 (1%)
Query: 17 KVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDPESARRACAD 76
K+F+GG++WET + +R YF FG++LEAVI+ D+ T +++G+GFV F DP A R
Sbjct: 7 KLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVVLL 66
Query: 77 PNPIIDGR 84
+ IIDG+
Sbjct: 67 KH-IIDGK 73
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 42/81 (51%)
Query: 11 GDTTFTKVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDPESA 70
G + K+FVGGLA E + YF QFG I + V++ D T + +G+GF+++ E+
Sbjct: 101 GPSNSKKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAV 160
Query: 71 RRACADPNPIIDGRRANCNIA 91
+ ++G+ +A
Sbjct: 161 DKVLQKTFHELNGKMVEVKLA 181
>AT5G47620.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:19302548-19304278 REVERSE LENGTH=453
Length = 453
Score = 78.6 bits (192), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 48/68 (70%), Gaps = 1/68 (1%)
Query: 17 KVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDPESARRACAD 76
K+F+GG++WET + +R YF FG++LEAVI+ D+ T +++G+GFV F DP A R
Sbjct: 7 KLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVVLL 66
Query: 77 PNPIIDGR 84
+ IIDG+
Sbjct: 67 KH-IIDGK 73
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 42/81 (51%)
Query: 11 GDTTFTKVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDPESA 70
G + K+FVGGLA E + YF QFG I + V++ D T + +G+GF+++ E+
Sbjct: 123 GPSNSKKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAV 182
Query: 71 RRACADPNPIIDGRRANCNIA 91
+ ++G+ +A
Sbjct: 183 DKVLQKTFHELNGKMVEVKLA 203
>AT3G15010.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:5052844-5054058 FORWARD LENGTH=404
Length = 404
Score = 78.6 bits (192), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 38/81 (46%), Positives = 52/81 (64%)
Query: 12 DTTFTKVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDPESAR 71
D + K+F+ GLA +T TE +RS F +GD+ EA++I DK T KSKGYGFVTF + A
Sbjct: 71 DISQRKLFIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGFVTFMHVDGAL 130
Query: 72 RACADPNPIIDGRRANCNIAS 92
A +P+ IDGR +A+
Sbjct: 131 LALKEPSKKIDGRVTVTQLAA 151
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 49/84 (58%)
Query: 8 SQFGDTTFTKVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDP 67
SQ D + K++V + ++ P + + ++F +GD+ E + DK T KS+G+ ++
Sbjct: 159 SQIADISMRKIYVANVPFDMPADRLLNHFMAYGDVEEGPLGFDKVTGKSRGFALFVYKTA 218
Query: 68 ESARRACADPNPIIDGRRANCNIA 91
E A+ A ADP +IDG+ NC +A
Sbjct: 219 EGAQAALADPVKVIDGKHLNCKLA 242
>AT3G15010.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:5052844-5054058 FORWARD LENGTH=404
Length = 404
Score = 78.6 bits (192), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 38/81 (46%), Positives = 52/81 (64%)
Query: 12 DTTFTKVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDPESAR 71
D + K+F+ GLA +T TE +RS F +GD+ EA++I DK T KSKGYGFVTF + A
Sbjct: 71 DISQRKLFIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGFVTFMHVDGAL 130
Query: 72 RACADPNPIIDGRRANCNIAS 92
A +P+ IDGR +A+
Sbjct: 131 LALKEPSKKIDGRVTVTQLAA 151
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 49/84 (58%)
Query: 8 SQFGDTTFTKVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDP 67
SQ D + K++V + ++ P + + ++F +GD+ E + DK T KS+G+ ++
Sbjct: 159 SQIADISMRKIYVANVPFDMPADRLLNHFMAYGDVEEGPLGFDKVTGKSRGFALFVYKTA 218
Query: 68 ESARRACADPNPIIDGRRANCNIA 91
E A+ A ADP +IDG+ NC +A
Sbjct: 219 EGAQAALADPVKVIDGKHLNCKLA 242
>AT2G22090.2 | Symbols: UBA1A | RNA-binding (RRM/RBD/RNP motifs)
family protein | chr2:9389407-9390450 REVERSE LENGTH=347
Length = 347
Score = 77.8 bits (190), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 35/82 (42%), Positives = 49/82 (59%)
Query: 12 DTTFTKVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDPESAR 71
D T K+FV GL WET E + FE +G+I E ++ DK T K+KG+GFV F+ + A+
Sbjct: 100 DVTHRKIFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAK 159
Query: 72 RACADPNPIIDGRRANCNIASL 93
A +P I R A C +AS+
Sbjct: 160 EALKEPKKRILNRTATCQLASM 181
>AT2G22090.1 | Symbols: UBA1A | RNA-binding (RRM/RBD/RNP motifs)
family protein | chr2:9388571-9390450 REVERSE LENGTH=343
Length = 343
Score = 77.4 bits (189), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 35/82 (42%), Positives = 49/82 (59%)
Query: 12 DTTFTKVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDPESAR 71
D T K+FV GL WET E + FE +G+I E ++ DK T K+KG+GFV F+ + A+
Sbjct: 100 DVTHRKIFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAK 159
Query: 72 RACADPNPIIDGRRANCNIASL 93
A +P I R A C +AS+
Sbjct: 160 EALKEPKKRILNRTATCQLASM 181
>AT4G39260.3 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold,
circadian rhythm, and RNA binding 1 |
chr4:18274166-18274958 REVERSE LENGTH=92
Length = 92
Score = 74.3 bits (181), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 51/76 (67%), Gaps = 1/76 (1%)
Query: 17 KVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDPESARRACAD 76
+ FVGGLAW T E+++ F QFGD++++ II D+ + +S+G+GFVTF+D ++ R A +
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66
Query: 77 PN-PIIDGRRANCNIA 91
N +DGR N A
Sbjct: 67 MNGKELDGRVITVNEA 82
>AT4G39260.2 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold,
circadian rhythm, and RNA binding 1 |
chr4:18274166-18274958 REVERSE LENGTH=126
Length = 126
Score = 74.3 bits (181), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 51/76 (67%), Gaps = 1/76 (1%)
Query: 17 KVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDPESARRACAD 76
+ FVGGLAW T E+++ F QFGD++++ II D+ + +S+G+GFVTF+D ++ R A +
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66
Query: 77 PN-PIIDGRRANCNIA 91
N +DGR N A
Sbjct: 67 MNGKELDGRVITVNEA 82
>AT4G39260.1 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold,
circadian rhythm, and RNA binding 1 |
chr4:18274166-18274958 REVERSE LENGTH=169
Length = 169
Score = 74.3 bits (181), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 51/76 (67%), Gaps = 1/76 (1%)
Query: 17 KVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDPESARRACAD 76
+ FVGGLAW T E+++ F QFGD++++ II D+ + +S+G+GFVTF+D ++ R A +
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66
Query: 77 PN-PIIDGRRANCNIA 91
N +DGR N A
Sbjct: 67 MNGKELDGRVITVNEA 82
>AT3G07810.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:2492875-2495052 FORWARD LENGTH=494
Length = 494
Score = 72.0 bits (175), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 47/68 (69%), Gaps = 1/68 (1%)
Query: 17 KVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDPESARRACAD 76
K+F+GG++W+T E ++ YF FG+++EAVI+ D+ T +++G+GFV F DP A +
Sbjct: 7 KLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIVITE 66
Query: 77 PNPIIDGR 84
+ IDGR
Sbjct: 67 KHN-IDGR 73
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 35/58 (60%)
Query: 17 KVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDPESARRAC 74
K+FVGGL + ++YFEQFG + V++ D NT + +G+GF+T+ E+ +
Sbjct: 109 KIFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVL 166
>AT3G07810.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:2492875-2495102 FORWARD LENGTH=495
Length = 495
Score = 72.0 bits (175), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 47/68 (69%), Gaps = 1/68 (1%)
Query: 17 KVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDPESARRACAD 76
K+F+GG++W+T E ++ YF FG+++EAVI+ D+ T +++G+GFV F DP A +
Sbjct: 7 KLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIVITE 66
Query: 77 PNPIIDGR 84
+ IDGR
Sbjct: 67 KHN-IDGR 73
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 35/58 (60%)
Query: 17 KVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDPESARRAC 74
K+FVGGL + ++YFEQFG + V++ D NT + +G+GF+T+ E+ +
Sbjct: 109 KIFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVL 166
>AT4G39260.4 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold,
circadian rhythm, and RNA binding 1 |
chr4:18274166-18274958 REVERSE LENGTH=105
Length = 105
Score = 71.2 bits (173), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 45/62 (72%)
Query: 17 KVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDPESARRACAD 76
+ FVGGLAW T E+++ F QFGD++++ II D+ + +S+G+GFVTF+D ++ R A +
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66
Query: 77 PN 78
N
Sbjct: 67 MN 68
>AT2G19380.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr2:8383856-8386604 FORWARD LENGTH=613
Length = 613
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 46/81 (56%)
Query: 12 DTTFTKVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDPESAR 71
D +FV G W+T E +++ FE +G+I E ++ DK+T + KGYGFV F+ + AR
Sbjct: 404 DIAQRNIFVRGFGWDTTQENLKTAFESYGEIEECSVVMDKDTGRGKGYGFVMFKTRKGAR 463
Query: 72 RACADPNPIIDGRRANCNIAS 92
A P + R CN+AS
Sbjct: 464 EALKRPEKRMYNRIVVCNLAS 484
>AT3G56860.5 | Symbols: UBA2A | UBP1-associated protein 2A |
chr3:21050708-21052144 REVERSE LENGTH=478
Length = 478
Score = 70.1 bits (170), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 45/81 (55%)
Query: 12 DTTFTKVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDPESAR 71
D K+FV GL W+T TE + F+Q+G+I + + DK + KSKGYGF+ ++ AR
Sbjct: 136 DPVHRKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGAR 195
Query: 72 RACADPNPIIDGRRANCNIAS 92
A P I R C +AS
Sbjct: 196 NALKQPQKKIGSRMTACQLAS 216
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 43/80 (53%)
Query: 12 DTTFTKVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDPESAR 71
+ T K++V + E +++ +F +FG+I E + DK T + KG+ ++ ESA+
Sbjct: 241 EHTQKKIYVSNVGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAK 300
Query: 72 RACADPNPIIDGRRANCNIA 91
RA +P+ +G +C A
Sbjct: 301 RALEEPHKTFEGHILHCQKA 320
>AT3G56860.4 | Symbols: UBA2A | UBP1-associated protein 2A |
chr3:21050708-21052144 REVERSE LENGTH=478
Length = 478
Score = 70.1 bits (170), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 45/81 (55%)
Query: 12 DTTFTKVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDPESAR 71
D K+FV GL W+T TE + F+Q+G+I + + DK + KSKGYGF+ ++ AR
Sbjct: 136 DPVHRKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGAR 195
Query: 72 RACADPNPIIDGRRANCNIAS 92
A P I R C +AS
Sbjct: 196 NALKQPQKKIGSRMTACQLAS 216
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 43/80 (53%)
Query: 12 DTTFTKVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDPESAR 71
+ T K++V + E +++ +F +FG+I E + DK T + KG+ ++ ESA+
Sbjct: 241 EHTQKKIYVSNVGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAK 300
Query: 72 RACADPNPIIDGRRANCNIA 91
RA +P+ +G +C A
Sbjct: 301 RALEEPHKTFEGHILHCQKA 320
>AT3G56860.2 | Symbols: UBA2A | UBP1-associated protein 2A |
chr3:21050708-21052144 REVERSE LENGTH=478
Length = 478
Score = 70.1 bits (170), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 45/81 (55%)
Query: 12 DTTFTKVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDPESAR 71
D K+FV GL W+T TE + F+Q+G+I + + DK + KSKGYGF+ ++ AR
Sbjct: 136 DPVHRKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGAR 195
Query: 72 RACADPNPIIDGRRANCNIAS 92
A P I R C +AS
Sbjct: 196 NALKQPQKKIGSRMTACQLAS 216
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 43/80 (53%)
Query: 12 DTTFTKVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDPESAR 71
+ T K++V + E +++ +F +FG+I E + DK T + KG+ ++ ESA+
Sbjct: 241 EHTQKKIYVSNVGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAK 300
Query: 72 RACADPNPIIDGRRANCNIA 91
RA +P+ +G +C A
Sbjct: 301 RALEEPHKTFEGHILHCQKA 320
>AT3G56860.1 | Symbols: UBA2A | UBP1-associated protein 2A |
chr3:21050708-21052144 REVERSE LENGTH=478
Length = 478
Score = 70.1 bits (170), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 45/81 (55%)
Query: 12 DTTFTKVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDPESAR 71
D K+FV GL W+T TE + F+Q+G+I + + DK + KSKGYGF+ ++ AR
Sbjct: 136 DPVHRKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGAR 195
Query: 72 RACADPNPIIDGRRANCNIAS 92
A P I R C +AS
Sbjct: 196 NALKQPQKKIGSRMTACQLAS 216
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 43/80 (53%)
Query: 12 DTTFTKVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDPESAR 71
+ T K++V + E +++ +F +FG+I E + DK T + KG+ ++ ESA+
Sbjct: 241 EHTQKKIYVSNVGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAK 300
Query: 72 RACADPNPIIDGRRANCNIA 91
RA +P+ +G +C A
Sbjct: 301 RALEEPHKTFEGHILHCQKA 320
>AT3G56860.3 | Symbols: UBA2A | UBP1-associated protein 2A |
chr3:21050708-21052144 REVERSE LENGTH=478
Length = 478
Score = 70.1 bits (170), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 45/81 (55%)
Query: 12 DTTFTKVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDPESAR 71
D K+FV GL W+T TE + F+Q+G+I + + DK + KSKGYGF+ ++ AR
Sbjct: 136 DPVHRKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGAR 195
Query: 72 RACADPNPIIDGRRANCNIAS 92
A P I R C +AS
Sbjct: 196 NALKQPQKKIGSRMTACQLAS 216
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 43/80 (53%)
Query: 12 DTTFTKVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDPESAR 71
+ T K++V + E +++ +F +FG+I E + DK T + KG+ ++ ESA+
Sbjct: 241 EHTQKKIYVSNVGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAK 300
Query: 72 RACADPNPIIDGRRANCNIA 91
RA +P+ +G +C A
Sbjct: 301 RALEEPHKTFEGHILHCQKA 320
>AT2G41060.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:17127138-17128493 FORWARD LENGTH=451
Length = 451
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 45/82 (54%)
Query: 12 DTTFTKVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDPESAR 71
D K+FV GL W+T + + F+Q+G+I + + DK + +SKGYGF+ F+ AR
Sbjct: 124 DLVHRKIFVHGLGWDTKADSLIDAFKQYGEIEDCKCVVDKVSGQSKGYGFILFKSRSGAR 183
Query: 72 RACADPNPIIDGRRANCNIASL 93
A P I R C +AS+
Sbjct: 184 NALKQPQKKIGTRMTACQLASI 205
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 44/76 (57%)
Query: 17 KVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDPESARRACAD 76
K++V ++ + +++ +F +FG+I E + DK T + KG+ +R ESA++A +
Sbjct: 228 KIYVSNVSADIDPQKLLEFFSRFGEIEEGPLGLDKATGRPKGFALFVYRSLESAKKALEE 287
Query: 77 PNPIIDGRRANCNIAS 92
P+ +G +C+ A+
Sbjct: 288 PHKTFEGHVLHCHKAN 303
>AT2G41060.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:17127138-17128493 FORWARD LENGTH=451
Length = 451
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 45/82 (54%)
Query: 12 DTTFTKVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDPESAR 71
D K+FV GL W+T + + F+Q+G+I + + DK + +SKGYGF+ F+ AR
Sbjct: 124 DLVHRKIFVHGLGWDTKADSLIDAFKQYGEIEDCKCVVDKVSGQSKGYGFILFKSRSGAR 183
Query: 72 RACADPNPIIDGRRANCNIASL 93
A P I R C +AS+
Sbjct: 184 NALKQPQKKIGTRMTACQLASI 205
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 44/76 (57%)
Query: 17 KVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDPESARRACAD 76
K++V ++ + +++ +F +FG+I E + DK T + KG+ +R ESA++A +
Sbjct: 228 KIYVSNVSADIDPQKLLEFFSRFGEIEEGPLGLDKATGRPKGFALFVYRSLESAKKALEE 287
Query: 77 PNPIIDGRRANCNIAS 92
P+ +G +C+ A+
Sbjct: 288 PHKTFEGHVLHCHKAN 303
>AT2G21660.2 | Symbols: ATGRP7, CCR2 | cold, circadian rhythm, and
rna binding 2 | chr2:9265477-9266316 REVERSE LENGTH=159
Length = 159
Score = 68.9 bits (167), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 51/82 (62%), Gaps = 2/82 (2%)
Query: 11 GDTTFTKVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDPESA 70
GD + + FVGGLAW T + + F Q+GD++++ II D+ T +S+G+GFVTF+D ++
Sbjct: 4 GDVEY-RCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAM 62
Query: 71 RRACADPN-PIIDGRRANCNIA 91
+ A N +DGR N A
Sbjct: 63 KDAIEGMNGQDLDGRSITVNEA 84
>AT2G21660.1 | Symbols: ATGRP7, CCR2, GR-RBP7, GRP7 | cold,
circadian rhythm, and rna binding 2 |
chr2:9265477-9266316 REVERSE LENGTH=176
Length = 176
Score = 68.9 bits (167), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 51/82 (62%), Gaps = 2/82 (2%)
Query: 11 GDTTFTKVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDPESA 70
GD + + FVGGLAW T + + F Q+GD++++ II D+ T +S+G+GFVTF+D ++
Sbjct: 4 GDVEY-RCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAM 62
Query: 71 RRACADPN-PIIDGRRANCNIA 91
+ A N +DGR N A
Sbjct: 63 KDAIEGMNGQDLDGRSITVNEA 84
>AT2G22100.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:9392397-9393545 REVERSE LENGTH=382
Length = 382
Score = 68.2 bits (165), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 48/77 (62%)
Query: 12 DTTFTKVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDPESAR 71
D++ +FV GL W+T E +++ FE +G+I E ++ DK+T ++KG+GFV F+ + AR
Sbjct: 159 DSSQRNIFVRGLGWDTTHENLKAAFEVYGEITECSVVMDKDTGRAKGFGFVLFKTRKGAR 218
Query: 72 RACADPNPIIDGRRANC 88
A +P + R +C
Sbjct: 219 AALKNPEKRMYNRTVSC 235
>AT1G17640.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:6067394-6069098 REVERSE LENGTH=369
Length = 369
Score = 67.8 bits (164), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 49/72 (68%), Gaps = 1/72 (1%)
Query: 17 KVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDPESARRACAD 76
K+FVGG++WET E +YF +FG+++++VI+TD+ T +G+GFVTF D A + +
Sbjct: 67 KLFVGGVSWETTAETFANYFGKFGEVVDSVIMTDRITGNPRGFGFVTFADSAVAEKVL-E 125
Query: 77 PNPIIDGRRANC 88
+ +ID R+ +
Sbjct: 126 EDHVIDDRKVDL 137
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 41/60 (68%)
Query: 17 KVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDPESARRACAD 76
K+FVGGL +E+++YF +GDI+E I+ D +T +S+G+GFVTF+ +S R +D
Sbjct: 158 KIFVGGLPPLLEEDELKNYFCVYGDIIEHQIMYDHHTGRSRGFGFVTFQTEDSVDRLFSD 217
>AT4G13850.4 | Symbols: ATGRP2 | glycine-rich RNA-binding protein 2
| chr4:8021314-8022065 FORWARD LENGTH=129
Length = 129
Score = 67.8 bits (164), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 46/72 (63%), Gaps = 4/72 (5%)
Query: 16 TKVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDPESARRACA 75
TK+F+GGL+W T +R F FGD+++A +I D+ T +S+G+GFV F D +A A +
Sbjct: 35 TKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAIS 94
Query: 76 DPNPIIDGRRAN 87
+ +DG+ N
Sbjct: 95 E----MDGKELN 102
>AT4G13850.3 | Symbols: ATGRP2 | glycine-rich RNA-binding protein 2
| chr4:8021314-8022065 FORWARD LENGTH=144
Length = 144
Score = 67.8 bits (164), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 46/72 (63%), Gaps = 4/72 (5%)
Query: 16 TKVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDPESARRACA 75
TK+F+GGL+W T +R F FGD+++A +I D+ T +S+G+GFV F D +A A +
Sbjct: 35 TKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAIS 94
Query: 76 DPNPIIDGRRAN 87
+ +DG+ N
Sbjct: 95 E----MDGKELN 102
>AT4G13850.2 | Symbols: ATGRP2 | glycine-rich RNA-binding protein 2
| chr4:8021314-8022065 FORWARD LENGTH=153
Length = 153
Score = 67.8 bits (164), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 46/72 (63%), Gaps = 4/72 (5%)
Query: 16 TKVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDPESARRACA 75
TK+F+GGL+W T +R F FGD+++A +I D+ T +S+G+GFV F D +A A +
Sbjct: 35 TKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAIS 94
Query: 76 DPNPIIDGRRAN 87
+ +DG+ N
Sbjct: 95 E----MDGKELN 102
>AT4G13850.1 | Symbols: ATGRP2, GR-RBP2, GRP2 | glycine-rich
RNA-binding protein 2 | chr4:8021314-8022065 FORWARD
LENGTH=158
Length = 158
Score = 67.8 bits (164), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 46/72 (63%), Gaps = 4/72 (5%)
Query: 16 TKVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDPESARRACA 75
TK+F+GGL+W T +R F FGD+++A +I D+ T +S+G+GFV F D +A A +
Sbjct: 35 TKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAIS 94
Query: 76 DPNPIIDGRRAN 87
+ +DG+ N
Sbjct: 95 E----MDGKELN 102
>AT4G14300.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:8231179-8232785 FORWARD LENGTH=411
Length = 411
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 50/79 (63%), Gaps = 4/79 (5%)
Query: 12 DTTFTKVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDPESAR 71
D+ K+FVGG++WET +++R +F +G++ +A+++ DK T + +G+GFV F DP
Sbjct: 2 DSDQGKLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLD 61
Query: 72 RACADPNPI----IDGRRA 86
R + + I +D +RA
Sbjct: 62 RVLQEKHSIDTREVDVKRA 80
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 38/66 (57%), Gaps = 3/66 (4%)
Query: 7 RSQFGD--TTFTKVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTF 64
RS GD K+FVGGL EE R YFE +G + + I+ D+ T + +G+GFV+F
Sbjct: 99 RSSGGDAYNKTKKIFVGGLPPTLTDEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSF 158
Query: 65 RDPESA 70
D E A
Sbjct: 159 -DSEDA 163
>AT3G23830.2 | Symbols: GR-RBP4, GRP4 | glycine-rich RNA-binding
protein 4 | chr3:8606762-8607677 REVERSE LENGTH=136
Length = 136
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 50/78 (64%), Gaps = 1/78 (1%)
Query: 16 TKVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDPESARRACA 75
+K+FVGGL+W T ++ F FG++ EA +I D+ T +S+G+GFV+F +SA A
Sbjct: 35 SKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIK 94
Query: 76 DPN-PIIDGRRANCNIAS 92
+ + ++GR+ N+A+
Sbjct: 95 EMDGKELNGRQIRVNLAT 112
>AT3G23830.1 | Symbols: GR-RBP4, GRP4 | glycine-rich RNA-binding
protein 4 | chr3:8606762-8607677 REVERSE LENGTH=136
Length = 136
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 50/78 (64%), Gaps = 1/78 (1%)
Query: 16 TKVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDPESARRACA 75
+K+FVGGL+W T ++ F FG++ EA +I D+ T +S+G+GFV+F +SA A
Sbjct: 35 SKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIK 94
Query: 76 DPN-PIIDGRRANCNIAS 92
+ + ++GR+ N+A+
Sbjct: 95 EMDGKELNGRQIRVNLAT 112
>AT2G33410.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:14156085-14157435 FORWARD LENGTH=404
Length = 404
Score = 65.1 bits (157), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 45/74 (60%), Gaps = 4/74 (5%)
Query: 17 KVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDPESARRACAD 76
K+F+GG++W+T +R YF FG++L+ ++ +K T + +G+GFV F DP R D
Sbjct: 7 KLFIGGISWDTDENLLREYFSNFGEVLQVTVMREKATGRPRGFGFVAFSDPAVIDRVLQD 66
Query: 77 PNPI----IDGRRA 86
+ I +D +RA
Sbjct: 67 KHHIDNRDVDVKRA 80
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 37/53 (69%)
Query: 17 KVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDPES 69
K+FVGGL ++E R+YFE +G + +AVI+ D+ T + +G+GFV+F +S
Sbjct: 111 KIFVGGLPPALTSDEFRAYFETYGPVSDAVIMIDQTTQRPRGFGFVSFDSEDS 163
>AT3G26420.1 | Symbols: ATRZ-1A | RNA-binding (RRM/RBD/RNP motifs)
family protein with retrovirus zinc finger-like domain
| chr3:9671953-9673055 FORWARD LENGTH=245
Length = 245
Score = 61.2 bits (147), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 46/69 (66%), Gaps = 1/69 (1%)
Query: 17 KVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDPESARRACAD 76
+ F+GGLAW T +R FE++G ++EA ++ DK + +S+G+GF+TF + ++ A A
Sbjct: 8 RCFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAMDEAIAA 67
Query: 77 PNPI-IDGR 84
N + +DGR
Sbjct: 68 MNGMDLDGR 76
>AT1G74230.1 | Symbols: GR-RBP5 | glycine-rich RNA-binding protein 5
| chr1:27915346-27916857 FORWARD LENGTH=289
Length = 289
Score = 61.2 bits (147), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 46/77 (59%)
Query: 16 TKVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDPESARRACA 75
+K+FVGG+++ T +R F ++G++++A II D+ T +S+G+ FVTF E A A
Sbjct: 34 SKIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAMQ 93
Query: 76 DPNPIIDGRRANCNIAS 92
+ GRR N A+
Sbjct: 94 LDGQDLHGRRIRVNYAT 110
>AT1G18630.1 | Symbols: GR-RBP6 | glycine-rich RNA-binding protein 6
| chr1:6415226-6416283 FORWARD LENGTH=155
Length = 155
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 44/70 (62%), Gaps = 1/70 (1%)
Query: 16 TKVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDPESARRAC- 74
+K+FVGGL+ T E ++ F FG I++AV++ D+ + S+G+GFVT+ E A A
Sbjct: 36 SKIFVGGLSPSTDVELLKEAFGSFGKIVDAVVVLDRESGLSRGFGFVTYDSIEVANNAMQ 95
Query: 75 ADPNPIIDGR 84
A N +DGR
Sbjct: 96 AMQNKELDGR 105
>AT1G58470.1 | Symbols: ATRBP1, RBP1 | RNA-binding protein 1 |
chr1:21727374-21728539 FORWARD LENGTH=360
Length = 360
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 46/74 (62%), Gaps = 4/74 (5%)
Query: 17 KVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDPESARRACAD 76
K+FVGG+A ET E ++ YF ++G +LEAV+ +K T K +G+GFV F + +A D
Sbjct: 7 KLFVGGIAKETSEEALKQYFSRYGAVLEAVVAKEKVTGKPRGFGFVRFANDCDVVKALRD 66
Query: 77 PNPI----IDGRRA 86
+ I +D R+A
Sbjct: 67 THFILGKPVDVRKA 80
Score = 54.7 bits (130), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 36/54 (66%)
Query: 17 KVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDPESA 70
K+FVGGL+ T EE +SYFE+FG + V++ D T + +G+GFVT+ +S
Sbjct: 121 KIFVGGLSSNTTEEEFKSYFERFGRTTDVVVMHDGVTNRPRGFGFVTYDSEDSV 174
>AT5G40490.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:16225483-16227423 FORWARD LENGTH=423
Length = 423
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 45/73 (61%), Gaps = 1/73 (1%)
Query: 17 KVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDPESARRACAD 76
K+FVGGLA ET + E +F ++G+I ++VI+ D+ T + +G+GFVT+ D + D
Sbjct: 43 KIFVGGLARETTSAEFLKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADSSVVDKVIQD 102
Query: 77 PNPIIDGRRANCN 89
N II G++
Sbjct: 103 -NHIIIGKQVEIK 114
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 37/64 (57%)
Query: 17 KVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDPESARRACAD 76
K+FVGG+ +E + +F QFG++ E I+ D +T +S+G+GFVT+ + A
Sbjct: 131 KIFVGGIPSSVDDDEFKEFFMQFGELKEHQIMRDHSTGRSRGFGFVTYESEDMVDHLLAK 190
Query: 77 PNPI 80
N I
Sbjct: 191 GNRI 194
>AT5G61030.1 | Symbols: GR-RBP3 | glycine-rich RNA-binding protein 3
| chr5:24560870-24562152 FORWARD LENGTH=309
Length = 309
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 44/69 (63%), Gaps = 4/69 (5%)
Query: 16 TKVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDPESARRACA 75
+K+F+GG+A+ + +R F ++G++++ +I D+ T +S+G+GFVTF E+A A
Sbjct: 40 SKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAI- 98
Query: 76 DPNPIIDGR 84
+DGR
Sbjct: 99 ---QALDGR 104
>AT2G37510.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:15743112-15744504 REVERSE LENGTH=142
Length = 142
Score = 58.2 bits (139), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 46/68 (67%), Gaps = 1/68 (1%)
Query: 17 KVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDPESARRACAD 76
++FV GL+ T E+++ F FG +++A +ITD+++ +SKG+GFVT+ E A +A A+
Sbjct: 35 RLFVSGLSRLTTNEKLQDAFASFGQLVDARVITDRDSGRSKGFGFVTYATIEDAEKAKAE 94
Query: 77 PN-PIIDG 83
N +DG
Sbjct: 95 MNAKFLDG 102
>AT3G13224.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:4254848-4256621 FORWARD LENGTH=358
Length = 358
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 45/72 (62%), Gaps = 1/72 (1%)
Query: 17 KVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDPESARRACAD 76
K+F+GGL +T +F ++G+I ++VI+ D++T + +G+GF+TF DP + D
Sbjct: 20 KIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVIED 79
Query: 77 PNPIIDGRRANC 88
+ +I+G++
Sbjct: 80 TH-VINGKQVEI 90
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 40/73 (54%)
Query: 8 SQFGDTTFTKVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDP 67
+Q D K+FVGG+ +E++ +F ++G+++E +I D T +S+G+GFV F
Sbjct: 101 NQSKDIKTKKIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSE 160
Query: 68 ESARRACADPNPI 80
E + N I
Sbjct: 161 EVVDELLSKGNMI 173
>AT5G04280.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein with retrovirus zinc finger-like domain |
chr5:1192461-1195413 FORWARD LENGTH=310
Length = 310
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 37/51 (72%)
Query: 16 TKVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRD 66
+++FVGGL+ E ++ F +FGDIL+ I+ +++T +S+G+GF+TF D
Sbjct: 7 SRIFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFAD 57
>AT1G60650.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein with retrovirus zinc finger-like domain |
chr1:22340089-22342148 FORWARD LENGTH=292
Length = 292
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 45/78 (57%), Gaps = 4/78 (5%)
Query: 16 TKVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDPESARRACA 75
+++FVGGL+W+ ++ S F+++G I E I+ ++T + +G+GF+TF D RR
Sbjct: 12 SRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTD----RRGAD 67
Query: 76 DPNPIIDGRRANCNIASL 93
D + GR + S+
Sbjct: 68 DAIKHMHGRELGNKVISV 85
>AT1G60650.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein with retrovirus zinc finger-like domain |
chr1:22340089-22342148 FORWARD LENGTH=292
Length = 292
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 45/78 (57%), Gaps = 4/78 (5%)
Query: 16 TKVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDPESARRACA 75
+++FVGGL+W+ ++ S F+++G I E I+ ++T + +G+GF+TF D RR
Sbjct: 12 SRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTD----RRGAD 67
Query: 76 DPNPIIDGRRANCNIASL 93
D + GR + S+
Sbjct: 68 DAIKHMHGRELGNKVISV 85
>AT3G13224.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:4254848-4256014 FORWARD LENGTH=231
Length = 231
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 45/72 (62%), Gaps = 1/72 (1%)
Query: 17 KVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDPESARRACAD 76
K+F+GGL +T +F ++G+I ++VI+ D++T + +G+GF+TF DP + D
Sbjct: 20 KIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVIED 79
Query: 77 PNPIIDGRRANC 88
+ +I+G++
Sbjct: 80 TH-VINGKQVEI 90
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 40/73 (54%)
Query: 8 SQFGDTTFTKVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDP 67
+Q D K+FVGG+ +E++ +F ++G+++E +I D T +S+G+GFV F
Sbjct: 101 NQSKDIKTKKIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSE 160
Query: 68 ESARRACADPNPI 80
E + N I
Sbjct: 161 EVVDELLSKGNMI 173
>AT4G36960.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:17427349-17429589 FORWARD LENGTH=379
Length = 379
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 39/58 (67%)
Query: 17 KVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDPESARRAC 74
K+ V G+ W+ ++ ++ Y +FGD+ + +++ D++T +S+G+G+VTF E A+ A
Sbjct: 4 KLVVLGIPWDIDSDGLKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAKNAL 61
>AT4G36960.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:17427349-17429589 FORWARD LENGTH=379
Length = 379
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 39/58 (67%)
Query: 17 KVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDPESARRAC 74
K+ V G+ W+ ++ ++ Y +FGD+ + +++ D++T +S+G+G+VTF E A+ A
Sbjct: 4 KLVVLGIPWDIDSDGLKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAKNAL 61
>AT5G06210.1 | Symbols: | RNA binding (RRM/RBD/RNP motifs) family
protein | chr5:1878497-1879515 FORWARD LENGTH=146
Length = 146
Score = 54.7 bits (130), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 46/70 (65%), Gaps = 1/70 (1%)
Query: 16 TKVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDPESARRACA 75
+K+F+GGL++ T + + F + G ++EA I+ D+ + +SKG+GFVTF + A++A
Sbjct: 34 SKLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKALM 93
Query: 76 DPN-PIIDGR 84
+ N ++GR
Sbjct: 94 EFNGQQLNGR 103
>AT3G52380.1 | Symbols: CP33, PDE322 | chloroplast RNA-binding
protein 33 | chr3:19421619-19422855 FORWARD LENGTH=329
Length = 329
Score = 54.3 bits (129), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 45/77 (58%), Gaps = 1/77 (1%)
Query: 17 KVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDPESARRACAD 76
KV+ G L W ++ ++ F +L A +I ++NT +S+G+GF++F E+ + A A
Sbjct: 220 KVYAGNLGWNLTSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALAT 279
Query: 77 PNPI-IDGRRANCNIAS 92
N + ++GR N+AS
Sbjct: 280 MNGVEVEGRALRLNLAS 296
>AT4G00830.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:352782-354965 FORWARD LENGTH=495
Length = 495
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 39/61 (63%)
Query: 16 TKVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDPESARRACA 75
++VF+GGL + E++R E+ G+I E ++ D+++ SKGY FV F+ + A++A
Sbjct: 116 SEVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIE 175
Query: 76 D 76
+
Sbjct: 176 E 176
>AT4G00830.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:352842-354965 FORWARD LENGTH=467
Length = 467
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 39/61 (63%)
Query: 16 TKVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDPESARRACA 75
++VF+GGL + E++R E+ G+I E ++ D+++ SKGY FV F+ + A++A
Sbjct: 96 SEVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIE 155
Query: 76 D 76
+
Sbjct: 156 E 156
>AT3G20930.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:7331739-7333749 FORWARD LENGTH=374
Length = 374
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 47/76 (61%), Gaps = 1/76 (1%)
Query: 17 KVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDPESARRACAD 76
K+F+ GL++ T + +R+ FE FG+++E II DK + +SKGY F+ + E+A A +
Sbjct: 283 KLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFLEYTTEEAAGTALKE 342
Query: 77 PN-PIIDGRRANCNIA 91
N II+G ++A
Sbjct: 343 MNGKIINGWMIVVDVA 358
>AT5G47620.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:19302548-19304106 REVERSE LENGTH=371
Length = 371
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 42/81 (51%)
Query: 11 GDTTFTKVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDPESA 70
G + K+FVGGLA E + YF QFG I + V++ D T + +G+GF+++ E+
Sbjct: 41 GPSNSKKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAV 100
Query: 71 RRACADPNPIIDGRRANCNIA 91
+ ++G+ +A
Sbjct: 101 DKVLQKTFHELNGKMVEVKLA 121
>AT4G00830.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:352782-354965 FORWARD LENGTH=495
Length = 495
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 39/61 (63%)
Query: 16 TKVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDPESARRACA 75
++VF+GGL + E++R E+ G+I E ++ D+++ SKGY FV F+ + A++A
Sbjct: 116 SEVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIE 175
Query: 76 D 76
+
Sbjct: 176 E 176
>AT4G00830.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:352782-354965 FORWARD LENGTH=495
Length = 495
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 39/61 (63%)
Query: 16 TKVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDPESARRACA 75
++VF+GGL + E++R E+ G+I E ++ D+++ SKGY FV F+ + A++A
Sbjct: 116 SEVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIE 175
Query: 76 D 76
+
Sbjct: 176 E 176
>AT4G34110.1 | Symbols: PAB2, PABP2, ATPAB2 | poly(A) binding
protein 2 | chr4:16336732-16339892 FORWARD LENGTH=629
Length = 629
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 44/80 (55%), Gaps = 6/80 (7%)
Query: 4 PHYRSQFGDTT-----FTKVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKG 58
P R Q D+T FT V+V LA T +++++ F ++G I AV++ D KSKG
Sbjct: 198 PFLRRQERDSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKD-GEGKSKG 256
Query: 59 YGFVTFRDPESARRACADPN 78
+GFV F + + A RA N
Sbjct: 257 FGFVNFENADDAARAVESLN 276
>AT4G24770.1 | Symbols: RBP31, ATRBP31, CP31, ATRBP33 | 31-kDa RNA
binding protein | chr4:12766223-12767952 REVERSE
LENGTH=329
Length = 329
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Query: 17 KVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDPESARRAC-A 75
+V+VG L W+ + F + G ++EA ++ D+ T +S+G+GFVT D + A A
Sbjct: 245 RVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISA 304
Query: 76 DPNPIIDGRRANCNIA 91
++GR N+A
Sbjct: 305 LDGQNLEGRAIRVNVA 320
>AT3G46020.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:16912511-16913250 REVERSE LENGTH=102
Length = 102
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 40/69 (57%), Gaps = 1/69 (1%)
Query: 17 KVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDPESARRACAD 76
++FV L+ T + +R F FG I EA +I D T + KG+GF+TF + AR+A
Sbjct: 8 QLFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKALKS 67
Query: 77 PN-PIIDGR 84
+ I+DGR
Sbjct: 68 LDGKIVDGR 76
>AT4G16280.3 | Symbols: FCA | RNA binding;abscisic acid binding |
chr4:9208564-9214412 REVERSE LENGTH=533
Length = 533
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 36/62 (58%)
Query: 13 TTFTKVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDPESARR 72
++ K+FVG + EE+R YFEQ G++LE +I DK T + +G FV + + A R
Sbjct: 117 SSTVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADR 176
Query: 73 AC 74
A
Sbjct: 177 AI 178
>AT4G16280.4 | Symbols: | RNA binding;abscisic acid binding |
chr4:9207164-9214187 REVERSE LENGTH=672
Length = 672
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 36/62 (58%)
Query: 13 TTFTKVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDPESARR 72
++ K+FVG + EE+R YFEQ G++LE +I DK T + +G FV + + A R
Sbjct: 42 SSTVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADR 101
Query: 73 AC 74
A
Sbjct: 102 AI 103
>AT4G16280.2 | Symbols: FCA | RNA binding;abscisic acid binding |
chr4:9207164-9214412 REVERSE LENGTH=747
Length = 747
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 36/62 (58%)
Query: 13 TTFTKVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDPESARR 72
++ K+FVG + EE+R YFEQ G++LE +I DK T + +G FV + + A R
Sbjct: 117 SSTVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADR 176
Query: 73 AC 74
A
Sbjct: 177 AI 178
>AT5G54580.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:22171332-22172656 FORWARD LENGTH=156
Length = 156
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 43/69 (62%), Gaps = 4/69 (5%)
Query: 16 TKVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDPESARRACA 75
T +FV GL+ T +E +R+ F QFG++ +A ++TD+ + SKG+GFV + E + + A
Sbjct: 56 TNLFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGFVRYATLEDSAKGIA 115
Query: 76 DPNPIIDGR 84
+DG+
Sbjct: 116 G----MDGK 120
>AT5G08695.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:2829341-2834189 FORWARD LENGTH=690
Length = 690
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 36/57 (63%)
Query: 17 KVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDPESARRA 73
++FV GL + T EE+ +F +FGDI E ++ DK+T +G FV + PESA+ A
Sbjct: 228 RLFVHGLPYSTTEEELMEHFSKFGDISEVHLVLDKDTRSCRGMAFVLYLIPESAKMA 284
>AT2G27330.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:11695350-11696563 REVERSE LENGTH=116
Length = 116
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Query: 18 VFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDPESARRACADP 77
+FV G+++ + E + F Q+G +L+ +I DK + KG+ +VTF E A +A +
Sbjct: 23 LFVKGISFSSTEETLTQAFSQYGQVLKVDVIMDKIRCRPKGFAYVTFSSKEEAEKALLEL 82
Query: 78 N-PIIDGR 84
N ++DGR
Sbjct: 83 NAQLVDGR 90
>AT2G23350.1 | Symbols: PAB4, PABP4 | poly(A) binding protein 4 |
chr2:9943209-9946041 FORWARD LENGTH=662
Length = 662
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 38/60 (63%), Gaps = 1/60 (1%)
Query: 15 FTKVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDPESARRAC 74
FT V+V L+ T +E+++ F Q+G I AV++ D + KS+ +GFV F +PE A RA
Sbjct: 224 FTNVYVKNLSEATTDDELKTTFGQYGSISSAVVMRDGD-GKSRCFGFVNFENPEDAARAV 282
>AT3G08000.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:2555034-2555829 REVERSE LENGTH=143
Length = 143
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 31/48 (64%)
Query: 17 KVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTF 64
K+F+GGL+W + ++ F FG++ E I DK + +S+G+GFV F
Sbjct: 42 KLFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDF 89
>AT3G53460.3 | Symbols: CP29 | chloroplast RNA-binding protein 29 |
chr3:19819738-19821423 REVERSE LENGTH=342
Length = 342
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 16 TKVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDPESARRACA 75
+++VG L+W + + F + G ++EA +I D+++ +SKG+GFVT + ++A
Sbjct: 257 NRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAIN 316
Query: 76 DPN-PIIDGRR 85
N +DGR+
Sbjct: 317 SLNGADLDGRQ 327
>AT3G53460.2 | Symbols: CP29 | chloroplast RNA-binding protein 29 |
chr3:19819738-19821423 REVERSE LENGTH=342
Length = 342
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 16 TKVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDPESARRACA 75
+++VG L+W + + F + G ++EA +I D+++ +SKG+GFVT + ++A
Sbjct: 257 NRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAIN 316
Query: 76 DPN-PIIDGRR 85
N +DGR+
Sbjct: 317 SLNGADLDGRQ 327
>AT3G53460.1 | Symbols: CP29 | chloroplast RNA-binding protein 29 |
chr3:19819738-19821423 REVERSE LENGTH=342
Length = 342
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 16 TKVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDPESARRACA 75
+++VG L+W + + F + G ++EA +I D+++ +SKG+GFVT + ++A
Sbjct: 257 NRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAIN 316
Query: 76 DPN-PIIDGRR 85
N +DGR+
Sbjct: 317 SLNGADLDGRQ 327
>AT3G53460.4 | Symbols: CP29 | chloroplast RNA-binding protein 29 |
chr3:19819738-19821423 REVERSE LENGTH=363
Length = 363
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 16 TKVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDPESARRACA 75
+++VG L+W + + F + G ++EA +I D+++ +SKG+GFVT + ++A
Sbjct: 278 NRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAIN 337
Query: 76 DPN-PIIDGRR 85
N +DGR+
Sbjct: 338 SLNGADLDGRQ 348
>AT2G37220.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:15634980-15636331 REVERSE LENGTH=289
Length = 289
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 16 TKVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDPESARRACA 75
+V+VG L+W + S F + G ++EA +I D+++ +SKG+GFVT+ + + A
Sbjct: 204 NRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIK 263
Query: 76 DPN-PIIDGRRANCNIA 91
+ +DGR+ + A
Sbjct: 264 SLDGADLDGRQIRVSEA 280
>AT1G60000.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:22093678-22094540 REVERSE LENGTH=258
Length = 258
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Query: 17 KVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDPESARRACAD 76
K+FVG L+W +E + F + GD++ A ++ D +T +S+GYGFV + A
Sbjct: 178 KLFVGNLSWTVTSESLAGAFRECGDVVGARVVFDGDTGRSRGYGFVCYSSKAEMETALES 237
Query: 77 PNPI-IDGRRANCNIA 91
+ ++GR N+A
Sbjct: 238 LDGFELEGRAIRVNLA 253
>AT5G47320.1 | Symbols: RPS19 | ribosomal protein S19 |
chr5:19203801-19204951 FORWARD LENGTH=212
Length = 212
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 45/77 (58%), Gaps = 1/77 (1%)
Query: 16 TKVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDPESARRACA 75
TK+++GGL+ T ++ F F + EA ++T+K T +S+GYGFV F +SA A +
Sbjct: 31 TKLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAIS 90
Query: 76 DPN-PIIDGRRANCNIA 91
N ++G + N+A
Sbjct: 91 AMNGQELNGFNISVNVA 107
>AT2G21690.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:9270114-9270597 REVERSE LENGTH=117
Length = 117
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 47/78 (60%), Gaps = 7/78 (8%)
Query: 19 FVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDPESARRACADPN 78
FV GL +T +++ F +FG+++++ II D++T KS+ +GFVTF + +S D
Sbjct: 10 FVRGLDQDTDEKDLTDIFSKFGNVIDSKIIYDRDTGKSRRFGFVTFEEEKSM----TDAI 65
Query: 79 PIIDGR--RANC-NIASL 93
I+D R+ C N+ S+
Sbjct: 66 MIMDVEESRSKCVNVGSI 83
>AT5G50250.1 | Symbols: CP31B | chloroplast RNA-binding protein 31B
| chr5:20452677-20453965 REVERSE LENGTH=289
Length = 289
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 45/77 (58%), Gaps = 1/77 (1%)
Query: 17 KVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDPESARRACAD 76
K+FVG L ++ ++ + FEQ G + + +I +++T +S+G+GFVT E A +A
Sbjct: 114 KLFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEK 173
Query: 77 PNPI-IDGRRANCNIAS 92
N ++GRR N A+
Sbjct: 174 FNSFEVNGRRLTVNRAA 190
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 48/91 (52%), Gaps = 2/91 (2%)
Query: 2 AYPHYRSQFGDTTFTKVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGF 61
+ P + + D F +++VG L W+ + + F + G +++A +++D+ T +S+G+GF
Sbjct: 194 SRPERQPRVYDAAF-RIYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGF 252
Query: 62 VTFRDPESARRACADPN-PIIDGRRANCNIA 91
V + A A + ++GR N+A
Sbjct: 253 VQMSNENEVNVAIAALDGQNLEGRAIKVNVA 283
>AT4G13860.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:8022601-8023162 FORWARD LENGTH=87
Length = 87
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 47/76 (61%), Gaps = 1/76 (1%)
Query: 16 TKVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDPESARRACA 75
T+V+VG L+ T + +R F +G++++A+++ D+ T +S+G+GFVT+ A A +
Sbjct: 3 TRVYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAVS 62
Query: 76 DPN-PIIDGRRANCNI 90
+ ++GRR + +
Sbjct: 63 GMDGKELNGRRVSVKL 78
>AT1G71800.1 | Symbols: CSTF64 | cleavage stimulating factor 64 |
chr1:26999606-27001850 FORWARD LENGTH=461
Length = 461
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 5/77 (6%)
Query: 18 VFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDPE---SARRAC 74
VFVG + ++ E++R + G ++ ++TD+ T K KGYGF ++D E SARR
Sbjct: 11 VFVGNIPYDATEEQLREICGEVGPVVSFRLVTDRETGKPKGYGFCEYKDEETALSARRNL 70
Query: 75 ADPNPIIDGRRANCNIA 91
I+GR+ + A
Sbjct: 71 QSYE--INGRQLRVDFA 85
>AT1G73530.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:27643801-27645386 REVERSE LENGTH=181
Length = 181
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 41/70 (58%), Gaps = 1/70 (1%)
Query: 16 TKVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDPESARRACA 75
TK++V GL++ T + +R FEQFG+++ ++ DK + KG+ F+ + E A +A
Sbjct: 77 TKLYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYETEEEAMKAIQ 136
Query: 76 DPN-PIIDGR 84
+ +DGR
Sbjct: 137 GMHGKFLDGR 146
>AT1G60900.1 | Symbols: | U2 snRNP auxilliary factor, large
subunit, splicing factor | chr1:22424008-22427806
FORWARD LENGTH=589
Length = 589
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 36/69 (52%)
Query: 17 KVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDPESARRACAD 76
++FVGGL + ++R E FG + ++ D+ T SKGY F ++DP ACA
Sbjct: 376 RIFVGGLPYYFTEVQIRELLESFGPLRGFNLVKDRETGNSKGYAFCVYQDPSVTDIACAA 435
Query: 77 PNPIIDGRR 85
N I G +
Sbjct: 436 LNGIKMGDK 444