Miyakogusa Predicted Gene
- Lj0g3v0342969.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0342969.1 Non Characterized Hit- tr|I1LNB4|I1LNB4_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.13892
PE,70,0.000006,seg,NULL,CUFF.23539.1
(41 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr3g085750.1 | DNA polymerase alpha subunit B | HC | chr3:388... 47 3e-06
>Medtr3g085750.1 | DNA polymerase alpha subunit B | HC |
chr3:38804725-38799088 | 20130731
Length = 616
Score = 47.4 bits (111), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/40 (57%), Positives = 29/40 (72%), Gaps = 2/40 (5%)
Query: 1 MNEEIKSEFRKSRFHLNKXXXXXXXSKCVTFCINYSLSPS 40
M EEIKSEF+K+ F ++ SKC+TFCINYSL+PS
Sbjct: 1 MKEEIKSEFKKAGFDFDEEEEIL--SKCLTFCINYSLTPS 38