Miyakogusa Predicted Gene

Lj0g3v0342969.1
Show Alignment: 

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0342969.1 Non Characterized Hit- tr|I1LNB4|I1LNB4_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.13892
PE,70,0.000006,seg,NULL,CUFF.23539.1
         (41 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g085750.1 | DNA polymerase alpha subunit B | HC | chr3:388...    47   3e-06

>Medtr3g085750.1 | DNA polymerase alpha subunit B | HC |
          chr3:38804725-38799088 | 20130731
          Length = 616

 Score = 47.4 bits (111), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 23/40 (57%), Positives = 29/40 (72%), Gaps = 2/40 (5%)

Query: 1  MNEEIKSEFRKSRFHLNKXXXXXXXSKCVTFCINYSLSPS 40
          M EEIKSEF+K+ F  ++       SKC+TFCINYSL+PS
Sbjct: 1  MKEEIKSEFKKAGFDFDEEEEIL--SKCLTFCINYSLTPS 38