Miyakogusa Predicted Gene

Lj0g3v0340939.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0340939.1 Non Characterized Hit- tr|A5AHH6|A5AHH6_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,46.28,0.0000000000003,seg,NULL,CUFF.23337.1
         (124 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g088760.2 | negative cofactor 2 transcriptional co-repress...   102   8e-23
Medtr5g088760.1 | negative cofactor 2 transcriptional co-repress...   102   8e-23
Medtr5g088760.3 | negative cofactor 2 transcriptional co-repress...   102   8e-23

>Medtr5g088760.2 | negative cofactor 2 transcriptional co-repressor,
           putative | HC | chr5:38540164-38543606 | 20130731
          Length = 302

 Score =  102 bits (254), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 65/135 (48%), Positives = 80/135 (59%), Gaps = 22/135 (16%)

Query: 1   MTSHVKFEDDSDMLEENDKHTQSNESPENV------------SKPEEVKLSSPVRKLAEV 48
           + SHVKFEDD +  ++N  HTQ+NESPE V             +PEEVK  SPVRK AEV
Sbjct: 156 INSHVKFEDDCEASKQNGNHTQNNESPEIVRESDEVKLSSPVREPEEVKHCSPVRKPAEV 215

Query: 49  DVRNFDSNMN--PDENMDLLXX--------XXXXXXXXXXXXXXEEKQEEPPGCSLSDVE 98
            VRNFD N+N  PD++MD++                        EEK EE PG SLSD+E
Sbjct: 216 VVRNFDLNLNPDPDDDMDVISTPTPIPTGSSSKSVSEEKMKSISEEKIEEYPGWSLSDME 275

Query: 99  KMTIDPIQLANLNRR 113
           KM IDP+QLANL++R
Sbjct: 276 KMAIDPLQLANLSKR 290


>Medtr5g088760.1 | negative cofactor 2 transcriptional co-repressor,
           putative | HC | chr5:38540164-38543606 | 20130731
          Length = 285

 Score =  102 bits (254), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 65/135 (48%), Positives = 80/135 (59%), Gaps = 22/135 (16%)

Query: 1   MTSHVKFEDDSDMLEENDKHTQSNESPENV------------SKPEEVKLSSPVRKLAEV 48
           + SHVKFEDD +  ++N  HTQ+NESPE V             +PEEVK  SPVRK AEV
Sbjct: 139 INSHVKFEDDCEASKQNGNHTQNNESPEIVRESDEVKLSSPVREPEEVKHCSPVRKPAEV 198

Query: 49  DVRNFDSNMN--PDENMDLLXX--------XXXXXXXXXXXXXXEEKQEEPPGCSLSDVE 98
            VRNFD N+N  PD++MD++                        EEK EE PG SLSD+E
Sbjct: 199 VVRNFDLNLNPDPDDDMDVISTPTPIPTGSSSKSVSEEKMKSISEEKIEEYPGWSLSDME 258

Query: 99  KMTIDPIQLANLNRR 113
           KM IDP+QLANL++R
Sbjct: 259 KMAIDPLQLANLSKR 273


>Medtr5g088760.3 | negative cofactor 2 transcriptional co-repressor,
           putative | HC | chr5:38540164-38543606 | 20130731
          Length = 293

 Score =  102 bits (254), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 65/135 (48%), Positives = 80/135 (59%), Gaps = 22/135 (16%)

Query: 1   MTSHVKFEDDSDMLEENDKHTQSNESPENV------------SKPEEVKLSSPVRKLAEV 48
           + SHVKFEDD +  ++N  HTQ+NESPE V             +PEEVK  SPVRK AEV
Sbjct: 147 INSHVKFEDDCEASKQNGNHTQNNESPEIVRESDEVKLSSPVREPEEVKHCSPVRKPAEV 206

Query: 49  DVRNFDSNMN--PDENMDLLXX--------XXXXXXXXXXXXXXEEKQEEPPGCSLSDVE 98
            VRNFD N+N  PD++MD++                        EEK EE PG SLSD+E
Sbjct: 207 VVRNFDLNLNPDPDDDMDVISTPTPIPTGSSSKSVSEEKMKSISEEKIEEYPGWSLSDME 266

Query: 99  KMTIDPIQLANLNRR 113
           KM IDP+QLANL++R
Sbjct: 267 KMAIDPLQLANLSKR 281