Miyakogusa Predicted Gene

Lj0g3v0340939.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj0g3v0340939.1 Non Chatacterized Hit- tr|A5AHH6|A5AHH6_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,46.28,0.0000000000003,seg,NULL,CUFF.23337.1
         (377 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC78001                                                      159   1e-38
gnl|LJGI|TC81300 similar to UniRef100_A7QMG3 Cluster: Chromosome...    60   1e-08

>gnl|LJGI|TC78001 
          Length = 418

 Score =  159 bits (80), Expect = 1e-38
 Identities = 98/104 (94%)
 Strand = Plus / Plus

                                                                       
Query: 272 gatgttccttgtctgatgtggaaaaaatgaccattgatcccatacaactggctaacttga 331
           |||| |||||||||||||||||||||||| |||| |||||||||||||||||||||||||
Sbjct: 1   gatggtccttgtctgatgtggaaaaaatggccatcgatcccatacaactggctaacttga 60

                                                       
Query: 332 atagaaggattcatgaagatgtggaagattatgatgaagtctag 375
           ||| ||||||| |||| |||||||||||||||||||||||||||
Sbjct: 61  atacaaggattgatgatgatgtggaagattatgatgaagtctag 104


>gnl|LJGI|TC81300 similar to UniRef100_A7QMG3 Cluster: Chromosome undetermined
           scaffold_125, whole genome shotgun sequence; n=1; Vitis
           vinifera|Rep: Chromosome undetermined scaffold_125,
           whole genome shotgun sequence - Vitis vinifera (Grape),
           partial (44%)
          Length = 707

 Score = 60.0 bits (30), Expect = 1e-08
 Identities = 62/70 (88%), Gaps = 2/70 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgacttcacatgtcaagtttgaagatgattctgacatgttggaggaaaatgacaagcac 60
           ||||||||||||| ||| || |||||||||||||| |||||||| | ||||||| |||| 
Sbjct: 630 atgacttcacatgccaacttggaagatgattctgatatgttgga-gcaaatgac-agcat 687

                     
Query: 61  actcaaagca 70
           ||||||||||
Sbjct: 688 actcaaagca 697