Miyakogusa Predicted Gene

Lj0g3v0340929.3
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0340929.3 Non Characterized Hit- tr|I1JW72|I1JW72_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.19081
PE,70,0.00000000001, ,CUFF.23340.3
         (107 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g033910.1 | nucleoporin-like protein | HC | chr7:12472262-...   106   5e-24
Medtr2g072590.1 | nucleoporin-like protein | HC | chr2:30601209-...    97   4e-21

>Medtr7g033910.1 | nucleoporin-like protein | HC |
           chr7:12472262-12482139 | 20130731
          Length = 728

 Score =  106 bits (265), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 58/101 (57%), Positives = 75/101 (74%), Gaps = 1/101 (0%)

Query: 7   EHGKENTNLTTGKDDGKLAMASMLPKVSSEQRHQELNGAIPVGSSPLGFSKVRDDIGASP 66
           E GKE+TNLT+ +D G L  A  LPKV +E+RH+E N AI  GS+  G SK +D+IGASP
Sbjct: 180 EEGKEHTNLTSRQDVGGLVAAHKLPKVFNERRHEESNAAI-RGSATPGISKGQDEIGASP 238

Query: 67  IELARAYMDSRASDAGLNSKSMFDTVKSTTLYCDEAAIKPH 107
           IE+ARA+M S+AS+ G +SK+M  TV+ST L  DEAAIK +
Sbjct: 239 IEIARAFMGSQASEGGPSSKNMIQTVESTMLLTDEAAIKSY 279


>Medtr2g072590.1 | nucleoporin-like protein | HC |
           chr2:30601209-30609307 | 20130731
          Length = 717

 Score = 97.1 bits (240), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 55/108 (50%), Positives = 73/108 (67%), Gaps = 5/108 (4%)

Query: 4   AID----EHGKENTNLTTGKDDGKLAMASMLPKVSSEQRHQELNGAIPVGSSPLGFSKVR 59
           AID    E G  +TNLT+ +DDG +  A  LPKV +E++H+E N AI   S+P   SK  
Sbjct: 162 AIDVLNVEQGNGHTNLTSRQDDGGVLAARKLPKVFNERKHEESNAAIQGSSTPC-MSKGW 220

Query: 60  DDIGASPIELARAYMDSRASDAGLNSKSMFDTVKSTTLYCDEAAIKPH 107
           D+IGASP+E+ARAYM S+AS+A  N K+M  TV+ST L  D+A  KP+
Sbjct: 221 DEIGASPVEIARAYMGSQASEASPNCKNMVQTVESTILLNDKAGTKPY 268