Miyakogusa Predicted Gene

Lj0g3v0336659.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0336659.1 Non Chatacterized Hit- tr|G7ISV8|G7ISV8_MEDTR
Putative uncharacterized protein OS=Medicago
truncatul,57.63,0.00000000004, ,CUFF.23013.1
         (59 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G56400.2 | Symbols:  | F-box family protein | chr1:21111805-2...    47   3e-06
AT1G56400.1 | Symbols:  | F-box family protein | chr1:21111805-2...    47   3e-06

>AT1G56400.2 | Symbols:  | F-box family protein |
           chr1:21111805-21113621 REVERSE LENGTH=438
          Length = 438

 Score = 47.0 bits (110), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 23/48 (47%), Positives = 33/48 (68%), Gaps = 1/48 (2%)

Query: 1   MQLPQHVYDLGSLLESLKLYSCGFSMPHLSNFRSLKEISFGWIEISEA 48
           +QLP  VY L +L ESLK+YSCGF     SN R  +++S GWI++++ 
Sbjct: 107 VQLPVCVYSLTTL-ESLKIYSCGFDPSKFSNSRLPRKLSIGWIKLTDV 153


>AT1G56400.1 | Symbols:  | F-box family protein |
           chr1:21111805-21113621 REVERSE LENGTH=479
          Length = 479

 Score = 46.6 bits (109), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 23/48 (47%), Positives = 33/48 (68%), Gaps = 1/48 (2%)

Query: 1   MQLPQHVYDLGSLLESLKLYSCGFSMPHLSNFRSLKEISFGWIEISEA 48
           +QLP  VY L +L ESLK+YSCGF     SN R  +++S GWI++++ 
Sbjct: 148 VQLPVCVYSLTTL-ESLKIYSCGFDPSKFSNSRLPRKLSIGWIKLTDV 194