Miyakogusa Predicted Gene
- Lj0g3v0329879.2
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0329879.2 Non Chatacterized Hit- tr|K4C2B9|K4C2B9_SOLLC
Uncharacterized protein OS=Solanum lycopersicum
GN=LET,29.57,1e-18,SUBFAMILY NOT NAMED,NULL; FAMILY NOT NAMED,NULL;
seg,NULL,CUFF.22466.2
(414 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G07540.1 | Symbols: TRFL2 | TRF-like 2 | chr1:2318433-2321048... 56 4e-08
AT5G13820.1 | Symbols: TBP1, ATBP-1, ATBP1, ATTBP1, HPPBF-1 | te... 55 9e-08
AT3G46590.3 | Symbols: TRFL1, ATTRP2 | TRF-like 1 | chr3:1715364... 55 1e-07
AT3G46590.2 | Symbols: TRFL1, ATTRP2 | TRF-like 1 | chr3:1715364... 55 1e-07
AT3G46590.1 | Symbols: TRFL1, ATTRP2, TRP2 | TRF-like 1 | chr3:1... 54 1e-07
>AT1G07540.1 | Symbols: TRFL2 | TRF-like 2 | chr1:2318433-2321048
REVERSE LENGTH=630
Length = 630
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 50/88 (56%), Gaps = 6/88 (6%)
Query: 268 DDDENFSGCAHPSTKTRPFRPRTCIVEQRIGKNLASKYQKVAQESKHDTLPNSVSDGNLK 327
DD ENFS C +T+ FR I ++RI K ASKY KV + K T+ NS D +LK
Sbjct: 225 DDGENFSAC----YRTKSFRSTLRIGDRRIRKVWASKYCKVPPKLKDTTVTNS--DLDLK 278
Query: 328 PVYSSRRDYYKRQRSEMNIPFKKRKLFN 355
Y S++ K RSE N P KKR+ F+
Sbjct: 279 SDYYSKKHCLKSLRSERNYPIKKRRYFD 306
>AT5G13820.1 | Symbols: TBP1, ATBP-1, ATBP1, ATTBP1, HPPBF-1 |
telomeric DNA binding protein 1 | chr5:4461694-4464355
FORWARD LENGTH=640
Length = 640
Score = 55.1 bits (131), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 88/391 (22%), Positives = 157/391 (40%), Gaps = 83/391 (21%)
Query: 14 NGYQVPTKPRATRSPRGRATFQRKVEDNQMLAFELLATVAGDLLQENQNPTTSCNGSSEK 73
NG+ P P+A RS R + + +R +++++ A +LLA++AG LL+E+++ +TS S
Sbjct: 13 NGFDFPNIPKAPRSSRRKVSGKRSDDESEICAIDLLASLAGKLLEESESSSTSTYASEAD 72
Query: 74 DQ---GGFVKEENQDANKPFKAELSDEASCDRRYQQFVKEGCLDANMPLKAELSDEGN-- 128
+ GG +K+E +D P K+E D GN
Sbjct: 73 NLDHLGGLIKQELEDGY---------------------------TTKPCKSEFFDPGNPA 105
Query: 129 ----SDRKSISNLSSEVYDKHCCMKEYLHPEID-----GHSFITSTVTSSSCSERFLAEM 179
S+ S++ L ++ C +++ P D G + ++T +C
Sbjct: 106 SKSTSENTSVTCLPFSSFENDCILEQT--PVSDCKRASGLKSLVGSITEETC-------- 155
Query: 180 VVDERRHNEMKKSACKVELGSTGCPNSIGCKLDDDASKVNDELHKLEKVPIGTGTGVCCF 239
VV+E + GS N+ K D S+++ + + + C
Sbjct: 156 VVNE-------------DAGSEQGANTFSLK---DPSQLHSQSPESVLLDGDVKLAPCTD 199
Query: 240 EDPLDEKPPALINTKLSGYDDNVPVVSRDDDENFSGCAHPSTKTRPFRPRTCIVEQRIGK 299
+ P N GY ++ +V RDDDEN+ S K + +RP + + +RI
Sbjct: 200 QVP---------NDSFKGYRNHSKLVCRDDDENYCKYYKFSDKCKSYRPLSRVGNRRI-- 248
Query: 300 NLASKYQKVAQESKHDTLPNSVSDGNLKPVYSSRRDYYKRQRSEMNIPFKKRKLFNCXXX 359
Q V SK ++ +DG LK +Y R+ Y + +KR+L +
Sbjct: 249 -----MQSVRAISKLKCFEDTRTDGRLKALYRKRKLCYGYNPWKRETIHRKRRLSDKGLV 303
Query: 360 XXXXXFIRSGRTYKSPENDMNQGVSYSSSGI 390
+ S SPE ++ +S++ I
Sbjct: 304 VNYDGGLSSESVSNSPEKGESENGDFSAAKI 334
>AT3G46590.3 | Symbols: TRFL1, ATTRP2 | TRF-like 1 |
chr3:17153642-17155946 FORWARD LENGTH=547
Length = 547
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 45/66 (68%), Gaps = 1/66 (1%)
Query: 3 LVLQKGLDHRFNGYQVPTKPRATRSPRGRATFQRKVE-DNQMLAFELLATVAGDLLQENQ 61
+V K L+ +GY++P + RA RS R + +++K+ D++M A +LLATVAG LL E++
Sbjct: 1 MVSHKVLEFGDDGYKLPAQARAPRSLRKKRIYEKKIPGDDKMCAIDLLATVAGSLLLESK 60
Query: 62 NPTTSC 67
+P +C
Sbjct: 61 SPVNAC 66
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/117 (37%), Positives = 57/117 (48%), Gaps = 26/117 (22%)
Query: 260 DNVPVVSR-DDDENFSGCAHPSTKTRPFRPRTCIVEQRIGKNLASKYQKVAQESKHDTLP 318
D+V + SR DDDENFSG +TR RP I ++RI K LAS++ K
Sbjct: 164 DDVNLFSRNDDDENFSGY----IRTRMTRPVPRIGDRRIRKILASRHWK----------- 208
Query: 319 NSVSDGNLKPVYSSRRDYY--KRQRSEMNIPFKKRKLFNCXXXXXXXXFIRSGRTYK 373
G+ KP Y S+R YY QRS P KKRK F+ + G+T+K
Sbjct: 209 -----GDAKPWYCSKRSYYLHHHQRS---YPIKKRKYFDSVYDSNSDDYRLQGKTHK 257
>AT3G46590.2 | Symbols: TRFL1, ATTRP2 | TRF-like 1 |
chr3:17153642-17155946 FORWARD LENGTH=553
Length = 553
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 45/66 (68%), Gaps = 1/66 (1%)
Query: 3 LVLQKGLDHRFNGYQVPTKPRATRSPRGRATFQRKVE-DNQMLAFELLATVAGDLLQENQ 61
+V K L+ +GY++P + RA RS R + +++K+ D++M A +LLATVAG LL E++
Sbjct: 1 MVSHKVLEFGDDGYKLPAQARAPRSLRKKRIYEKKIPGDDKMCAIDLLATVAGSLLLESK 60
Query: 62 NPTTSC 67
+P +C
Sbjct: 61 SPVNAC 66
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/117 (37%), Positives = 58/117 (49%), Gaps = 20/117 (17%)
Query: 260 DNVPVVSR-DDDENFSGCAHPSTKTRPFRPRTCIVEQRIGKNLASKYQKVAQESKHDTLP 318
D+V + SR DDDENFSG +TR RP I ++RI K LAS++ K ++ D
Sbjct: 164 DDVNLFSRNDDDENFSGY----IRTRMTRPVPRIGDRRIRKILASRHWKGGSKNNTDA-- 217
Query: 319 NSVSDGNLKPVYSSRRDYY--KRQRSEMNIPFKKRKLFNCXXXXXXXXFIRSGRTYK 373
KP Y S+R YY QRS P KKRK F+ + G+T+K
Sbjct: 218 --------KPWYCSKRSYYLHHHQRS---YPIKKRKYFDSVYDSNSDDYRLQGKTHK 263
>AT3G46590.1 | Symbols: TRFL1, ATTRP2, TRP2 | TRF-like 1 |
chr3:17153642-17155946 FORWARD LENGTH=552
Length = 552
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/117 (37%), Positives = 58/117 (49%), Gaps = 20/117 (17%)
Query: 260 DNVPVVSR-DDDENFSGCAHPSTKTRPFRPRTCIVEQRIGKNLASKYQKVAQESKHDTLP 318
D+V + SR DDDENFSG +TR RP I ++RI K LAS++ K ++ D
Sbjct: 163 DDVNLFSRNDDDENFSGY----IRTRMTRPVPRIGDRRIRKILASRHWKGGSKNNTDA-- 216
Query: 319 NSVSDGNLKPVYSSRRDYY--KRQRSEMNIPFKKRKLFNCXXXXXXXXFIRSGRTYK 373
KP Y S+R YY QRS P KKRK F+ + G+T+K
Sbjct: 217 --------KPWYCSKRSYYLHHHQRS---YPIKKRKYFDSVYDSNSDDYRLQGKTHK 262
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 42/65 (64%)
Query: 3 LVLQKGLDHRFNGYQVPTKPRATRSPRGRATFQRKVEDNQMLAFELLATVAGDLLQENQN 62
+V K L+ +GY++P + RA RS R R ++ D++M A +LLATVAG LL E+++
Sbjct: 1 MVSHKVLEFGDDGYKLPAQARAPRSLRKRIYEKKIPGDDKMCAIDLLATVAGSLLLESKS 60
Query: 63 PTTSC 67
P +C
Sbjct: 61 PVNAC 65