Miyakogusa Predicted Gene
- Lj0g3v0324629.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0324629.1 tr|G7JNJ4|G7JNJ4_MEDTR Spastin OS=Medicago
truncatula GN=MTR_4g074920 PE=4 SV=1,47.13,8e-17,seg,NULL;
coiled-coil,NULL,CUFF.22408.1
(467 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G19740.1 | Symbols: | P-loop containing nucleoside triphosph... 203 3e-52
AT1G50140.2 | Symbols: | P-loop containing nucleoside triphosph... 186 4e-47
AT1G50140.1 | Symbols: | P-loop containing nucleoside triphosph... 180 2e-45
>AT3G19740.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr3:6855944-6862930
REVERSE LENGTH=993
Length = 993
Score = 203 bits (516), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 124/270 (45%), Positives = 168/270 (62%), Gaps = 38/270 (14%)
Query: 234 QKLVPYNVEELPKITSGE--SETFKSNDGKFDDKFECQLRKGDRVKYIGPYIPVTADDSR 291
+K+VP +EE K+ + E E ++ + DK +KGDRVKY+GP A R
Sbjct: 322 KKIVP-KLEEFEKLVAEELHGEACEAAAVEHSDKARRPAKKGDRVKYVGPSKKADAK-HR 379
Query: 292 PLAYGQRGEVYEVNGDRVSVILDINED-------ELESVDNIKPPICWTDVNNIEHDLDA 344
PL+ GQRGEVYEVNG+RV+VI DI D + + + K + W DV +++HDLD
Sbjct: 380 PLSSGQRGEVYEVNGNRVAVIFDIGGDTSSEGGDKKSTEHSHKLHMHWIDVGDLKHDLDM 439
Query: 345 PSEDCYIAMEALCEVLHSKQPLIVYFPDG---LHKSVPKSIQSEFFQKVQEKFELLSGPI 401
+ED YIA+EAL EVLHS QPLIVYFPD L ++VPKS Q+EF KVQE F+ LS P+
Sbjct: 440 QAEDGYIALEALSEVLHSTQPLIVYFPDSSQWLSRAVPKSKQNEFVDKVQEMFDKLSSPV 499
Query: 402 VLICGQNKAQ--SKGQLLFSMN---------------------KGQKTSKDGEIYKPF-N 437
V+ICG+NK + SK + F+M G+KTS+D EIYK F N
Sbjct: 500 VMICGRNKIETGSKEREKFTMILPNFGRLAKLPLPLKRLTEGLTGRKTSEDNEIYKLFTN 559
Query: 438 VLSIQPPKDEKLLVIFKKQLEEDRKIVISQ 467
V+++ PPK+E+ L++F KQL EDR+IV+S+
Sbjct: 560 VMNLVPPKEEENLIVFNKQLGEDRRIVMSR 589
Score = 65.5 bits (158), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 37/69 (53%), Positives = 48/69 (69%), Gaps = 5/69 (7%)
Query: 10 GTELYQERLVRALAQHLQVPLLVFDRSILTPYDIDDDL----LSHNDNAES-GEEGSLES 64
GTELY+ERLVRALA+ +QVPLLV D S+L PYD DD S +NAE+ +E + ES
Sbjct: 227 GTELYRERLVRALARDVQVPLLVLDSSVLAPYDFADDYNEESESDGENAEAEADESTTES 286
Query: 65 KNEDDNDAR 73
E+D+ A+
Sbjct: 287 DAEEDSSAQ 295
>AT1G50140.2 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr1:18569921-18578663
REVERSE LENGTH=981
Length = 981
Score = 186 bits (471), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 116/252 (46%), Positives = 152/252 (60%), Gaps = 35/252 (13%)
Query: 250 GESETFKSNDGKFDDKFECQLRKGDRVKYIGPYIPVTADDSRPLAYGQRGEVYEVNGDRV 309
G SE ++ DDK + L+KGD+VKY+G A RPL+ GQRGEVYEV G+RV
Sbjct: 327 GSSEVSEAAAVDQDDKAKRPLKKGDQVKYVGSPKKDEAK-HRPLSSGQRGEVYEVIGNRV 385
Query: 310 SVILDINEDELESVDNIKP-------PICWTDVNNIEHDLDAPSEDCYIAMEALCEVLHS 362
+VI + +D+ KP PI W DV ++++DLD + D YIAMEAL EVL S
Sbjct: 386 AVIFEYGDDKTSEGSEKKPAEQPQMLPIHWLDVKDLKYDLDMQAVDGYIAMEALNEVLQS 445
Query: 363 KQPLIVYFPDG---LHKSVPKSIQSEFFQKVQEKFELLSGPIVLICGQNKAQ--SKGQLL 417
QPLIVYFPD L ++VPK+ + EF KV+E F+ LSGPIV+ICGQNK + SK +
Sbjct: 446 IQPLIVYFPDSTQWLSRAVPKTRRKEFVDKVKEMFDKLSGPIVMICGQNKIETGSKEREK 505
Query: 418 FSM---------------------NKGQKTSKDGEIYKPF-NVLSIQPPKDEKLLVIFKK 455
F+M G+ S++ EIYK F NV+ + PPK+E L +FKK
Sbjct: 506 FTMVLPNLSRVVKLPLPLKGLTEGFTGRGKSEENEIYKLFTNVMRLHPPKEEDTLRLFKK 565
Query: 456 QLEEDRKIVISQ 467
QL EDR+IVIS+
Sbjct: 566 QLGEDRRIVISR 577
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/47 (63%), Positives = 36/47 (76%), Gaps = 3/47 (6%)
Query: 10 GTELYQERLVRALAQHLQVPLLVFDRSILTPYDIDDDLLSHNDNAES 56
GTELY+ERLVRALA+ QVPLLV D S+L PYD DD +N+ +ES
Sbjct: 213 GTELYRERLVRALARDTQVPLLVLDSSVLAPYDFADD---YNEESES 256
>AT1G50140.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr1:18569921-18578663
REVERSE LENGTH=1003
Length = 1003
Score = 180 bits (456), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 116/273 (42%), Positives = 152/273 (55%), Gaps = 55/273 (20%)
Query: 250 GESETFKSNDGKFDDKFECQLRKGDRVKYIGP---------------------YIPVTAD 288
G SE ++ DDK + L+KGD+VKY+G T
Sbjct: 327 GSSEVSEAAAVDQDDKAKRPLKKGDQVKYVGSPKKDEAKHRVVLGKISTSDGQKSAFTVI 386
Query: 289 DSRPLAYGQRGEVYEVNGDRVSVILDINEDELESVDNIKP-------PICWTDVNNIEHD 341
RPL+ GQRGEVYEV G+RV+VI + +D+ KP PI W DV ++++D
Sbjct: 387 PGRPLSSGQRGEVYEVIGNRVAVIFEYGDDKTSEGSEKKPAEQPQMLPIHWLDVKDLKYD 446
Query: 342 LDAPSEDCYIAMEALCEVLHSKQPLIVYFPDG---LHKSVPKSIQSEFFQKVQEKFELLS 398
LD + D YIAMEAL EVL S QPLIVYFPD L ++VPK+ + EF KV+E F+ LS
Sbjct: 447 LDMQAVDGYIAMEALNEVLQSIQPLIVYFPDSTQWLSRAVPKTRRKEFVDKVKEMFDKLS 506
Query: 399 GPIVLICGQNKAQ--SKGQLLFSM---------------------NKGQKTSKDGEIYKP 435
GPIV+ICGQNK + SK + F+M G+ S++ EIYK
Sbjct: 507 GPIVMICGQNKIETGSKEREKFTMVLPNLSRVVKLPLPLKGLTEGFTGRGKSEENEIYKL 566
Query: 436 F-NVLSIQPPKDEKLLVIFKKQLEEDRKIVISQ 467
F NV+ + PPK+E L +FKKQL EDR+IVIS+
Sbjct: 567 FTNVMRLHPPKEEDTLRLFKKQLGEDRRIVISR 599
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/47 (63%), Positives = 36/47 (76%), Gaps = 3/47 (6%)
Query: 10 GTELYQERLVRALAQHLQVPLLVFDRSILTPYDIDDDLLSHNDNAES 56
GTELY+ERLVRALA+ QVPLLV D S+L PYD DD +N+ +ES
Sbjct: 213 GTELYRERLVRALARDTQVPLLVLDSSVLAPYDFADD---YNEESES 256