Miyakogusa Predicted Gene

Lj0g3v0315339.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0315339.1 Non Chatacterized Hit- tr|D8RVD9|D8RVD9_SELML
Putative uncharacterized protein OS=Selaginella
moelle,42.71,2e-17,SUBFAMILY NOT NAMED,NULL; DNA REPLICATION REGULATOR
DPB11-RELATED,NULL; BRCT,BRCT domain; no descrip,CUFF.21300.1
         (269 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma19g05660.1                                                       178   6e-45
Glyma10g01740.1                                                        60   2e-09
Glyma10g15600.1                                                        52   8e-07

>Glyma19g05660.1 
          Length = 468

 Score =  178 bits (451), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 126/305 (41%), Positives = 163/305 (53%), Gaps = 63/305 (20%)

Query: 1   MGKVLVTVTGYHGLERFNLIKLIAYAGSSYSGRMAEFINHLVCFKFEGRKYEIARRLKIP 60
           M +V+ TV+GYHG ERFNLIKLI+ AG +Y G M++ I HLVC+KFEG+KY+IA + +I 
Sbjct: 1   MERVVATVSGYHGSERFNLIKLISQAGGNYVGAMSKSITHLVCWKFEGKKYDIALKFRIH 60

Query: 61  IVNHRWIEDCLRERTRLPVDSYMLQSGHEVGPLSLRVP----------ETFGPKQWLIQS 110
           +VNHRW+EDC++E  R+P DSY LQSGHEVGPL L VP          +  G K     S
Sbjct: 61  VVNHRWVEDCIKEGRRVPEDSYTLQSGHEVGPLLLEVPLVRASSLTKKKLVGDKLHATGS 120

Query: 111 TNLNSEPFGP------VLEDSEILLIYEHQE-------RPGKGKRTICSDSGVSIAAGKS 157
              NS+ F        VLEDS   L+ +H+E          +GKR IC+    +  A  S
Sbjct: 121 ERKNSD-FSSGASGTYVLEDS--CLMKKHEESSSYSSRLSRRGKRHICNGKENTTVARPS 177

Query: 158 CKER--------------------------RTDTLNTKDGAISCLSGGVTIDYLPDNSSS 191
            K R                          R D+  T   A S LS GV  + +  N S 
Sbjct: 178 RKGRRLASDLVDKVVLGPSILDLTTDDHLFRMDSQQTDAEATSSLSVGVNNNIILQN-SE 236

Query: 192 GPDDGIFNKKRSTTGGSDENELIK---------STTLFVEDTPLVPQTSIDR-SSRAEKS 241
           GP+ G+ N+ R+  GGS++ E IK         ++T F+ED   VPQTSID  SS  EK 
Sbjct: 237 GPNAGLSNQSRTIIGGSNDIEQIKDSSHISKPRNSTSFIEDPLPVPQTSIDLCSSDDEKF 296

Query: 242 KDCDQ 246
            D DQ
Sbjct: 297 TDGDQ 301


>Glyma10g01740.1 
          Length = 1285

 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 37/130 (28%), Positives = 61/130 (46%), Gaps = 44/130 (33%)

Query: 4   VLVTVTGYHGLERFNLIKLIAYAGSSYSGRM-AEFINHLVCFKFEG-------------- 48
           +++ +TGY   +R +++ ++   G+ +S  + A  + HL+C+KFEG              
Sbjct: 110 LIMCLTGYLRQDRDDIMTMVGLMGAQFSKPLVANKVTHLICYKFEGLFRFLKFWHHIQLH 169

Query: 49  ---------------------------RKYEIARRL-KIPIVNHRWIEDCLRERTRLPVD 80
                                       KYE+A++L  I +VNHRW+EDCL+E   LP D
Sbjct: 170 VYAILFLLIAFYYRLFMFMMYFILFVHEKYELAKKLGTIKLVNHRWLEDCLKEWVLLPED 229

Query: 81  SYMLQSGHEV 90
            Y  +SG E+
Sbjct: 230 KYN-KSGFEL 238


>Glyma10g15600.1 
          Length = 41

 Score = 51.6 bits (122), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 23/41 (56%), Positives = 30/41 (73%)

Query: 1  MGKVLVTVTGYHGLERFNLIKLIAYAGSSYSGRMAEFINHL 41
          M +V+ TV+ YHG ERFNLIKLI+  G +Y G M++ I HL
Sbjct: 1  MERVVATVSNYHGSERFNLIKLISQTGGNYIGAMSKSITHL 41