Miyakogusa Predicted Gene

Lj0g3v0315339.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0315339.1 Non Characterized Hit- tr|D8RVD9|D8RVD9_SELML
Putative uncharacterized protein OS=Selaginella
moelle,42.71,2e-17,SUBFAMILY NOT NAMED,NULL; DNA REPLICATION REGULATOR
DPB11-RELATED,NULL; BRCT,BRCT domain; no descrip,CUFF.21300.1
         (269 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr6g016895.1 | zinc finger, C3HC4 type (RING finger) protein,...   169   4e-42
Medtr6g016895.2 | zinc finger, C3HC4 type (RING finger) protein,...   169   4e-42
Medtr1g087290.1 | DNA replication regulator dpb11, putative | HC...    82   6e-16
Medtr1g087290.2 | DNA replication regulator dpb11, putative | HC...    82   6e-16

>Medtr6g016895.1 | zinc finger, C3HC4 type (RING finger) protein,
           putative | HC | chr6:6583310-6579005 | 20130731
          Length = 465

 Score =  169 bits (427), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 121/304 (39%), Positives = 166/304 (54%), Gaps = 65/304 (21%)

Query: 1   MGKVLVTVTGYHGLERFNLIKLIAYAGSSYSGRMAEFINHLVCFKFEGRKYEIARRLKIP 60
           M +V+ TV+GY  LERFNLIKLI+ +G+SY G M++ I HLVC+KFEG+KY+IAR+LKI 
Sbjct: 1   MDRVVATVSGYRELERFNLIKLISRSGASYVGDMSKSITHLVCWKFEGKKYDIARKLKIY 60

Query: 61  IVNHRWIEDCLRERTRLPVDSYMLQSGHEVGPLSLRVPETFGP----KQWLI-------- 108
           +VNHRW+EDC++E  R+P DSY LQSG EVGPL + VP         K  ++        
Sbjct: 61  VVNHRWVEDCIKEGRRVPEDSYTLQSGQEVGPLVMEVPVNVQASTLSKNKVVRGRSCDIV 120

Query: 109 ---QSTNLNSEPFG-PVLEDSEILLIYEHQE---------RPG----------------K 139
              Q+T+ +S   G PVLEDS   L+ +H E         R G                K
Sbjct: 121 SERQNTDFSSGVCGIPVLEDSS--LLKQHGESSSYPPRLSRKGKRNRGNDVSTTGRHSHK 178

Query: 140 GKRTICSDSGVSIAA--------GKSCKERRTDTLNTKDGAISCLSGGVTIDYLPDNSSS 191
           G+R + +D  V+ A          + C+  R D   T+    S LS  V ID + +N S 
Sbjct: 179 GRRVVKNDGEVTFAPIILDLSTDDQLCEIDRQD---TEAAVTSTLSRHVNIDNIQEN-SE 234

Query: 192 GPDDGIFNKKRSTTGGSDENE---------LIKSTTLFVEDTPLVPQTSIDR-SSRAEKS 241
           G D G+ ++ R+  G SD  E          ++++TLF+ED   + QTS+D  SS AEK 
Sbjct: 235 GLDAGLSSQSRTIGGSSDGIEQSRDSNHISTLRNSTLFIEDPLPLTQTSVDLCSSAAEKF 294

Query: 242 KDCD 245
            D D
Sbjct: 295 SDGD 298


>Medtr6g016895.2 | zinc finger, C3HC4 type (RING finger) protein,
           putative | HC | chr6:6583491-6578659 | 20130731
          Length = 462

 Score =  169 bits (427), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 121/304 (39%), Positives = 166/304 (54%), Gaps = 65/304 (21%)

Query: 1   MGKVLVTVTGYHGLERFNLIKLIAYAGSSYSGRMAEFINHLVCFKFEGRKYEIARRLKIP 60
           M +V+ TV+GY  LERFNLIKLI+ +G+SY G M++ I HLVC+KFEG+KY+IAR+LKI 
Sbjct: 1   MDRVVATVSGYRELERFNLIKLISRSGASYVGDMSKSITHLVCWKFEGKKYDIARKLKIY 60

Query: 61  IVNHRWIEDCLRERTRLPVDSYMLQSGHEVGPLSLRVPETFGP----KQWLI-------- 108
           +VNHRW+EDC++E  R+P DSY LQSG EVGPL + VP         K  ++        
Sbjct: 61  VVNHRWVEDCIKEGRRVPEDSYTLQSGQEVGPLVMEVPVNVQASTLSKNKVVRGRSCDIV 120

Query: 109 ---QSTNLNSEPFG-PVLEDSEILLIYEHQE---------RPG----------------K 139
              Q+T+ +S   G PVLEDS   L+ +H E         R G                K
Sbjct: 121 SERQNTDFSSGVCGIPVLEDSS--LLKQHGESSSYPPRLSRKGKRNRGNDVSTTGRHSHK 178

Query: 140 GKRTICSDSGVSIAA--------GKSCKERRTDTLNTKDGAISCLSGGVTIDYLPDNSSS 191
           G+R + +D  V+ A          + C+  R D   T+    S LS  V ID + +N S 
Sbjct: 179 GRRVVKNDGEVTFAPIILDLSTDDQLCEIDRQD---TEAAVTSTLSRHVNIDNIQEN-SE 234

Query: 192 GPDDGIFNKKRSTTGGSDENE---------LIKSTTLFVEDTPLVPQTSIDR-SSRAEKS 241
           G D G+ ++ R+  G SD  E          ++++TLF+ED   + QTS+D  SS AEK 
Sbjct: 235 GLDAGLSSQSRTIGGSSDGIEQSRDSNHISTLRNSTLFIEDPLPLTQTSVDLCSSAAEKF 294

Query: 242 KDCD 245
            D D
Sbjct: 295 SDGD 298


>Medtr1g087290.1 | DNA replication regulator dpb11, putative | HC |
           chr1:39126643-39118885 | 20130731
          Length = 1346

 Score = 82.0 bits (201), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 38/89 (42%), Positives = 61/89 (68%), Gaps = 3/89 (3%)

Query: 4   VLVTVTGYHGLERFNLIKLIAYAGSSYSGRM-AEFINHLVCFKFEGRKYEIARRLK-IPI 61
           ++V +TGY   +R +++ ++   G+ +S  + A  + HL+C+KFEG KYE+A+RL  I +
Sbjct: 111 LVVCLTGYLRQDRDDIMTMVGLMGAQFSKPLVANKVTHLICYKFEGEKYELAKRLATIKL 170

Query: 62  VNHRWIEDCLRERTRLPVDSYMLQSGHEV 90
           VNHRW+EDCL++   LP D Y  +SG E+
Sbjct: 171 VNHRWLEDCLKDWVLLPEDKYN-KSGFEL 198


>Medtr1g087290.2 | DNA replication regulator dpb11, putative | HC |
           chr1:39126643-39118680 | 20130731
          Length = 1243

 Score = 82.0 bits (201), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 38/89 (42%), Positives = 61/89 (68%), Gaps = 3/89 (3%)

Query: 4   VLVTVTGYHGLERFNLIKLIAYAGSSYSGRM-AEFINHLVCFKFEGRKYEIARRLK-IPI 61
           ++V +TGY   +R +++ ++   G+ +S  + A  + HL+C+KFEG KYE+A+RL  I +
Sbjct: 111 LVVCLTGYLRQDRDDIMTMVGLMGAQFSKPLVANKVTHLICYKFEGEKYELAKRLATIKL 170

Query: 62  VNHRWIEDCLRERTRLPVDSYMLQSGHEV 90
           VNHRW+EDCL++   LP D Y  +SG E+
Sbjct: 171 VNHRWLEDCLKDWVLLPEDKYN-KSGFEL 198