Miyakogusa Predicted Gene

Lj0g3v0315339.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0315339.1 Non Chatacterized Hit- tr|D8RVD9|D8RVD9_SELML
Putative uncharacterized protein OS=Selaginella
moelle,42.71,2e-17,SUBFAMILY NOT NAMED,NULL; DNA REPLICATION REGULATOR
DPB11-RELATED,NULL; BRCT,BRCT domain; no descrip,CUFF.21300.1
         (269 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G67180.1 | Symbols:  | zinc finger (C3HC4-type RING finger) f...   123   1e-28
AT4G02110.1 | Symbols:  | transcription coactivators | chr4:9351...    85   6e-17

>AT1G67180.1 | Symbols:  | zinc finger (C3HC4-type RING finger)
          family protein / BRCT domain-containing protein |
          chr1:25130099-25132169 FORWARD LENGTH=453
          Length = 453

 Score =  123 bits (309), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 51/98 (52%), Positives = 73/98 (74%)

Query: 1  MGKVLVTVTGYHGLERFNLIKLIAYAGSSYSGRMAEFINHLVCFKFEGRKYEIARRLKIP 60
          M  V+ TV+GYHG +RF LIKLI+++G+SY G M+  I HLVC+KFEG+KY++A++    
Sbjct: 1  MENVVATVSGYHGSDRFKLIKLISHSGASYVGAMSRSITHLVCWKFEGKKYDLAKKFGTV 60

Query: 61 IVNHRWIEDCLRERTRLPVDSYMLQSGHEVGPLSLRVP 98
          +VNHRW+E+C++E  R+    YM  SG EVGPL + +P
Sbjct: 61 VVNHRWVEECVKEGRRVSETPYMFDSGEEVGPLMIELP 98


>AT4G02110.1 | Symbols:  | transcription coactivators |
           chr4:935191-940191 FORWARD LENGTH=1329
          Length = 1329

 Score = 84.7 bits (208), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 38/89 (42%), Positives = 62/89 (69%), Gaps = 3/89 (3%)

Query: 4   VLVTVTGYHGLERFNLIKLIAYAGSSYSGRM-AEFINHLVCFKFEGRKYEIARRLK-IPI 61
           ++V +TGY G +R ++++++   G  +S  + A  + HL+C+KFEG KYE+A+R+K I +
Sbjct: 112 LVVCLTGYQGHDREDIMRMVELMGGQFSKPLVANRVTHLICYKFEGEKYELAKRIKRIKL 171

Query: 62  VNHRWIEDCLRERTRLPVDSYMLQSGHEV 90
           VNHRW+EDCL+    LP   Y + SG+E+
Sbjct: 172 VNHRWLEDCLKNWKLLPEVDYEI-SGYEL 199