Miyakogusa Predicted Gene

Lj0g3v0307729.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0307729.1 Non Chatacterized Hit- tr|I1KAP9|I1KAP9_SOYBN
Uncharacterized protein OS=Glycine max PE=4
SV=1,45.95,0.00000000000001,seg,NULL; F-box,F-box domain, cyclin-like;
F-box domain,F-box domain, cyclin-like; A Receptor for Ub,CUFF.20799.1
         (167 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G17710.1 | Symbols:  | F-box and associated interaction domai...    48   4e-06

>AT3G17710.1 | Symbols:  | F-box and associated interaction
           domains-containing protein | chr3:6055597-6056703
           FORWARD LENGTH=368
          Length = 368

 Score = 47.8 bits (112), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 35/68 (51%), Gaps = 3/68 (4%)

Query: 65  PVKSIVRFKAVCKLWRSLISDPLFASLHFQRAAPSLLF-ADSHAIRT--IDLEGPLQSHR 121
           P +S+VRF+ VCK W  L SD  F   H  RA P  +F  +S  + +  IDL G ++   
Sbjct: 19  PPRSLVRFRTVCKHWNGLFSDKRFVKKHLVRARPQFIFLTESKKMYSIEIDLGGTIEVRE 78

Query: 122 VSQPINCH 129
           V    +C 
Sbjct: 79  VPYDFHCQ 86