Miyakogusa Predicted Gene

Lj0g3v0305439.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0305439.1 Non Characterized Hit- tr|I1JGL0|I1JGL0_SOYBN
Uncharacterized protein OS=Glycine max PE=4
SV=1,74.19,0.0000000000001,seg,NULL,CUFF.20554.1
         (62 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g058260.1 | transmembrane protein, putative | HC | chr1:25...    85   2e-17
Medtr1g058260.2 | transmembrane protein, putative | HC | chr1:25...    82   9e-17

>Medtr1g058260.1 | transmembrane protein, putative | HC |
          chr1:25640317-25641347 | 20130731
          Length = 62

 Score = 84.7 bits (208), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 38/62 (61%), Positives = 45/62 (72%)

Query: 1  MVVWSYPPTARQLAVTGGVFVIGASLLSVGAYLSYVNVAPXXXXXXXXXEAFRNYIRKKF 60
          MV WSYPPT+R++A+T  VF IGASL   GAYLS+VNVAP         EA RNY+RK+F
Sbjct: 1  MVYWSYPPTSREIALTAAVFAIGASLFGAGAYLSFVNVAPQQARAKERSEAMRNYLRKRF 60

Query: 61 GD 62
          GD
Sbjct: 61 GD 62


>Medtr1g058260.2 | transmembrane protein, putative | HC |
          chr1:25640345-25641333 | 20130731
          Length = 72

 Score = 82.4 bits (202), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 37/61 (60%), Positives = 44/61 (72%)

Query: 1  MVVWSYPPTARQLAVTGGVFVIGASLLSVGAYLSYVNVAPXXXXXXXXXEAFRNYIRKKF 60
          MV WSYPPT+R++A+T  VF IGASL   GAYLS+VNVAP         EA RNY+RK+F
Sbjct: 1  MVYWSYPPTSREIALTAAVFAIGASLFGAGAYLSFVNVAPQQARAKERSEAMRNYLRKRF 60

Query: 61 G 61
          G
Sbjct: 61 G 61