Miyakogusa Predicted Gene

Lj0g3v0301919.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0301919.1 Non Chatacterized Hit- tr|I3LR72|I3LR72_PIG
Uncharacterized protein OS=Sus scrofa GN=Ssc.27897 PE=4
,27.74,2e-18,seg,NULL; BINDING,NULL; FAMILY NOT NAMED,NULL; no
description,Armadillo-like helical; ARM repeat,Arm,CUFF.20297.1
         (336 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G14300.1 | Symbols:  | ARM repeat superfamily protein | chr1:...   452   e-127
AT1G14300.2 | Symbols:  | ARM repeat superfamily protein | chr1:...   436   e-123

>AT1G14300.1 | Symbols:  | ARM repeat superfamily protein |
           chr1:4882654-4884686 REVERSE LENGTH=339
          Length = 339

 Score =  452 bits (1163), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 218/323 (67%), Positives = 263/323 (81%)

Query: 1   MATELEELVSFLTCPSPQITKAAVDIVRGLTGSDDGLHSLANHANTLIPALSRLLTALKE 60
           M TELEELV FL+ PSP + KAAV+IV GLTGS++GL SL+ ++  L+P+LS+LL   KE
Sbjct: 1   MVTELEELVEFLSSPSPPVKKAAVEIVSGLTGSEEGLQSLSKYSEILLPSLSQLLNESKE 60

Query: 61  VSEAAAEALVNLSQNLNLAAEMVQMRLIDTAMDVLYKPDCSXXXXXXXXXXXXXXXDAGI 120
           VSE AA+ALVNLSQ   LA +M+QM LI  AMD+LYKP+                 D G+
Sbjct: 61  VSEPAAQALVNLSQKCELAKKMIQMGLIKVAMDMLYKPESCITRLLVMLLVNLTQLDDGV 120

Query: 121 ASLLQIEDDKVRGLYVMKLVRSFCRTTHESDDDAFEHVGSILVNISKQRAGRELLLDPKR 180
           +SLLQI+D+K+ GL++MKLVRSFCR++ E+ DD FEHVGSILVNISK   GR+LLL+PKR
Sbjct: 121 SSLLQIDDEKMHGLHIMKLVRSFCRSSGETADDQFEHVGSILVNISKTEDGRKLLLEPKR 180

Query: 181 GLLKQIIRQFDSNSSLRKKGVSGTIRNCCFEAENQLQNLLLVSEFLWPALLLPVAGNKIY 240
            LLKQIIRQFDS + LRKKGV+GTIRNCCFEA+NQLQN+LL+SEFLWPALLLPVAG+K Y
Sbjct: 181 RLLKQIIRQFDSTNQLRKKGVAGTIRNCCFEAKNQLQNILLISEFLWPALLLPVAGSKTY 240

Query: 241 SDVDRSKMPLELGTALSIEREPVSDPEIRTQALEAIYLISLQEAGRRAFWSVNGPKIVQI 300
           S+ D +KMP ELG+ALSIEREPV+DP+IR Q LEAIYLI L+EAGRRAFWSVNGP+I+Q+
Sbjct: 241 SEQDVAKMPPELGSALSIEREPVTDPDIRVQTLEAIYLIILEEAGRRAFWSVNGPRILQL 300

Query: 301 GYEDEEDPKVMEAYEQLGSLLIH 323
           GYE EEDPK M AYEQ+GSLL+ 
Sbjct: 301 GYEYEEDPKAMRAYEQVGSLLVE 323


>AT1G14300.2 | Symbols:  | ARM repeat superfamily protein |
           chr1:4882654-4884686 REVERSE LENGTH=377
          Length = 377

 Score =  436 bits (1122), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 219/361 (60%), Positives = 263/361 (72%), Gaps = 38/361 (10%)

Query: 1   MATELEELVSFLTCPSPQITKAAVDIVRGLTGSDDGLHSLANHANTLIPALSRLLTALKE 60
           M TELEELV FL+ PSP + KAAV+IV GLTGS++GL SL+ ++  L+P+LS+LL   KE
Sbjct: 1   MVTELEELVEFLSSPSPPVKKAAVEIVSGLTGSEEGLQSLSKYSEILLPSLSQLLNESKE 60

Query: 61  VSEAAAEALVNLSQNLNLAAEMVQMRLIDTAMDVLYKPDCSXXXXXXXXXXXXXXXDAGI 120
           VSE AA+ALVNLSQ   LA +M+QM LI  AMD+LYKP+                 D G+
Sbjct: 61  VSEPAAQALVNLSQKCELAKKMIQMGLIKVAMDMLYKPESCITRLLVMLLVNLTQLDDGV 120

Query: 121 ASLLQIEDDKVRGLYVMKLVRSFCRTTHESDDDAFEHVGSILVNISKQRAGRELLLDPKR 180
           +SLLQI+D+K+ GL++MKLVRSFCR++ E+ DD FEHVGSILVNISK   GR+LLL+PKR
Sbjct: 121 SSLLQIDDEKMHGLHIMKLVRSFCRSSGETADDQFEHVGSILVNISKTEDGRKLLLEPKR 180

Query: 181 GLLKQIIRQFDSNSSLRKKGVSGTIRNCCFEAENQLQNLLLVSEFLWPALLLPVAGNKIY 240
            LLKQIIRQFDS + LRKKGV+GTIRNCCFEA+NQLQN+LL+SEFLWPALLLPVAG+K Y
Sbjct: 181 RLLKQIIRQFDSTNQLRKKGVAGTIRNCCFEAKNQLQNILLISEFLWPALLLPVAGSKTY 240

Query: 241 SDVDRSKMPLELGTALSIEREPVSDPEIRTQALEAIYLI--------------------- 279
           S+ D +KMP ELG+ALSIEREPV+DP+IR Q LEAIYLI                     
Sbjct: 241 SEQDVAKMPPELGSALSIEREPVTDPDIRVQTLEAIYLIILEVKHFSVSLSLLVNSCEGP 300

Query: 280 -----------------SLQEAGRRAFWSVNGPKIVQIGYEDEEDPKVMEAYEQLGSLLI 322
                             LQEAGRRAFWSVNGP+I+Q+GYE EEDPK M AYEQ+GSLL+
Sbjct: 301 IKPKTYKRSSVMSKLLLMLQEAGRRAFWSVNGPRILQLGYEYEEDPKAMRAYEQVGSLLV 360

Query: 323 H 323
            
Sbjct: 361 E 361