Miyakogusa Predicted Gene
- Lj0g3v0301919.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj0g3v0301919.1 Non Chatacterized Hit- tr|I3LR72|I3LR72_PIG
Uncharacterized protein OS=Sus scrofa GN=Ssc.27897 PE=4
,27.74,2e-18,seg,NULL; BINDING,NULL; FAMILY NOT NAMED,NULL; no
description,Armadillo-like helical; ARM repeat,Arm,CUFF.20297.1
(1011 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC69296 similar to UniRef100_A7QEF1 Cluster: Chromosome... 2004 0.0
gnl|LJGI|FS337503 weakly similar to UniRef100_A7QEF1 Cluster: Ch... 396 e-109
gnl|LJGI|BP080753 similar to UniRef100_A7QEF1 Cluster: Chromosom... 137 2e-31
>gnl|LJGI|TC69296 similar to UniRef100_A7QEF1 Cluster: Chromosome chr1 scaffold_84,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr1 scaffold_84, whole genome shotgun
sequence - Vitis vinifera (Grape), complete
Length = 1410
Score = 2004 bits (1011), Expect = 0.0
Identities = 1011/1011 (100%)
Strand = Plus / Plus
Query: 1 atggcgacggagctggaagaactcgtgagctttctaacttgtccatcgccgcagatcaca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24 atggcgacggagctggaagaactcgtgagctttctaacttgtccatcgccgcagatcaca 83
Query: 61 aaggctgccgttgacatagttcgaggattaactggttctgatgacggcttgcactctctc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84 aaggctgccgttgacatagttcgaggattaactggttctgatgacggcttgcactctctc 143
Query: 121 gccaatcacgctaacacccttatacctgccttgtctcgcctcttaactgcactcaaggag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144 gccaatcacgctaacacccttatacctgccttgtctcgcctcttaactgcactcaaggag 203
Query: 181 gtttcagaggctgctgctgaagcccttgtaaacctctcacaaaatttgaatctagcggcg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 gtttcagaggctgctgctgaagcccttgtaaacctctcacaaaatttgaatctagcggcg 263
Query: 241 gagatggttcagatgagattgattgacacagctatggatgttttgtacaagccggactgt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gagatggttcagatgagattgattgacacagctatggatgttttgtacaagccggactgt 323
Query: 301 agcgttactcccttgcttgtcatgcttctagtgaatctcactcaacttgatgctggtatt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 agcgttactcccttgcttgtcatgcttctagtgaatctcactcaacttgatgctggtatt 383
Query: 361 gcttccttgcttcagattgaagatgacaaggtgcgggggttatatgttatgaagcttgtg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gcttccttgcttcagattgaagatgacaaggtgcgggggttatatgttatgaagcttgtg 443
Query: 421 agatcattttgtagaaccacccatgagagtgatgatgatgcttttgaacatgttggttca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 agatcattttgtagaaccacccatgagagtgatgatgatgcttttgaacatgttggttca 503
Query: 481 atacttgttaacatctcaaagcagcgggcagggagagagcttctacttgacccaaagcgg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 atacttgttaacatctcaaagcagcgggcagggagagagcttctacttgacccaaagcgg 563
Query: 541 ggtcttttaaagcagataataagacagtttgattctaacagttcgctgagaaagaaaggg 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ggtcttttaaagcagataataagacagtttgattctaacagttcgctgagaaagaaaggg 623
Query: 601 gtgtctggaactattcgcaattgttgctttgaagctgagaatcagctacaaaacttgctt 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 gtgtctggaactattcgcaattgttgctttgaagctgagaatcagctacaaaacttgctt 683
Query: 661 ttggtatcagagttcctctggcctgcattacttcttccagtagctggaaacaagatctat 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 ttggtatcagagttcctctggcctgcattacttcttccagtagctggaaacaagatctat 743
Query: 721 agtgacgtagacagatcaaaaatgccgcttgaacttgggactgcactctccattgagcgt 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 agtgacgtagacagatcaaaaatgccgcttgaacttgggactgcactctccattgagcgt 803
Query: 781 gaaccagtgagtgatccagaaattcgtactcaagcattggaagccatttacttgatctcc 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 gaaccagtgagtgatccagaaattcgtactcaagcattggaagccatttacttgatctcc 863
Query: 841 ttgcaggaggcaggtcgaagagcattttggtctgtaaatggacctaaaatagtacaaatc 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 864 ttgcaggaggcaggtcgaagagcattttggtctgtaaatggacctaaaatagtacaaatc 923
Query: 901 ggttatgaagatgaagaagatccaaaagtcatggaagcatatgaacaactgggatccttg 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 924 ggttatgaagatgaagaagatccaaaagtcatggaagcatatgaacaactgggatccttg 983
Query: 961 ttgattcacagtagcaatacagaggaaccatccagtgagacctcaaagtag 1011
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 984 ttgattcacagtagcaatacagaggaaccatccagtgagacctcaaagtag 1034
>gnl|LJGI|FS337503 weakly similar to UniRef100_A7QEF1 Cluster: Chromosome chr1
scaffold_84, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr1 scaffold_84, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (37%)
Length = 836
Score = 396 bits (200), Expect = e-109
Identities = 200/200 (100%)
Strand = Plus / Plus
Query: 176 aggaggtttcagaggctgctgctgaagcccttgtaaacctctcacaaaatttgaatctag 235
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 aggaggtttcagaggctgctgctgaagcccttgtaaacctctcacaaaatttgaatctag 448
Query: 236 cggcggagatggttcagatgagattgattgacacagctatggatgttttgtacaagccgg 295
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 cggcggagatggttcagatgagattgattgacacagctatggatgttttgtacaagccgg 508
Query: 296 actgtagcgttactcccttgcttgtcatgcttctagtgaatctcactcaacttgatgctg 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 actgtagcgttactcccttgcttgtcatgcttctagtgaatctcactcaacttgatgctg 568
Query: 356 gtattgcttccttgcttcag 375
||||||||||||||||||||
Sbjct: 569 gtattgcttccttgcttcag 588
Score = 353 bits (178), Expect = 1e-96
Identities = 178/178 (100%)
Strand = Plus / Plus
Query: 1 atggcgacggagctggaagaactcgtgagctttctaacttgtccatcgccgcagatcaca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6 atggcgacggagctggaagaactcgtgagctttctaacttgtccatcgccgcagatcaca 65
Query: 61 aaggctgccgttgacatagttcgaggattaactggttctgatgacggcttgcactctctc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66 aaggctgccgttgacatagttcgaggattaactggttctgatgacggcttgcactctctc 125
Query: 121 gccaatcacgctaacacccttatacctgccttgtctcgcctcttaactgcactcaagg 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 gccaatcacgctaacacccttatacctgccttgtctcgcctcttaactgcactcaagg 183
>gnl|LJGI|BP080753 similar to UniRef100_A7QEF1 Cluster: Chromosome chr1 scaffold_84,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr1 scaffold_84, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (7%)
Length = 489
Score = 137 bits (69), Expect = 2e-31
Identities = 72/73 (98%)
Strand = Plus / Minus
Query: 888 aatagtacaaatcggttatgaagatgaagaagatccaaaagtcatggaagcatatgaaca 947
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 489 aatagtacaaatcggttatgaagatgaagaagatcccaaagtcatggaagcatatgaaca 430
Query: 948 actgggatccttg 960
|||||||||||||
Sbjct: 429 actgggatccttg 417
Score = 103 bits (52), Expect = 2e-21
Identities = 52/52 (100%)
Strand = Plus / Minus
Query: 960 gttgattcacagtagcaatacagaggaaccatccagtgagacctcaaagtag 1011
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 gttgattcacagtagcaatacagaggaaccatccagtgagacctcaaagtag 236