Miyakogusa Predicted Gene
- Lj0g3v0300909.3
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0300909.3 Non Chatacterized Hit- tr|A5C9J2|A5C9J2_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,41.07,3e-19,seg,NULL; DUF4308,Domain of unknown function
DUF4308,CUFF.20247.3
(145 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G52220.1 | Symbols: | FUNCTIONS IN: molecular_function unkno... 168 1e-42
AT1G52220.2 | Symbols: | FUNCTIONS IN: molecular_function unkno... 161 1e-40
AT1G52220.3 | Symbols: | FUNCTIONS IN: molecular_function unkno... 100 5e-22
AT2G46820.2 | Symbols: PTAC8, TMP14, PSAP, PSI-P | photosystem I... 98 2e-21
AT2G46820.1 | Symbols: PTAC8, TMP14, PSAP, PSI-P | photosystem I... 98 2e-21
AT4G01150.1 | Symbols: | unknown protein; FUNCTIONS IN: molecul... 71 3e-13
AT4G38100.1 | Symbols: | unknown protein; LOCATED IN: chloropla... 62 1e-10
>AT1G52220.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast thylakoid membrane, chloroplast; EXPRESSED
IN: 23 plant structures; EXPRESSED DURING: 13 growth
stages; BEST Arabidopsis thaliana protein match is:
photosystem I P subunit (TAIR:AT2G46820.2); Has 291
Blast hits to 291 proteins in 50 species: Archae - 0;
Bacteria - 90; Metazoa - 0; Fungi - 0; Plants - 200;
Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
| chr1:19453770-19454605 REVERSE LENGTH=156
Length = 156
Score = 168 bits (425), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 89/156 (57%), Positives = 105/156 (67%), Gaps = 11/156 (7%)
Query: 1 MASIAASLQPPLLLHGRKSHTGNFPSFPVSLLPGRRNL-----------IALVVKASGXX 49
MASI+A+L PLLL RKS+ + P SL G +L I+L+VKASG
Sbjct: 1 MASISATLPSPLLLTQRKSNLTSIQKLPFSLTRGTNDLSPLSLTRNPSSISLMVKASGES 60
Query: 50 XXXXXXXXXXXXXXNVWDKPEDRLGLIGFGFAGIVALWASANLITAVDQLPVLPTVLELI 109
NVWDK EDRLGLIG GFAGIVALWAS NLITA+D+LPV+ + EL+
Sbjct: 61 SDSSTDLDVVSTIQNVWDKSEDRLGLIGLGFAGIVALWASLNLITAIDKLPVISSGFELV 120
Query: 110 GILFSVWFTYRYLLFKPDREELFQILNKSVSDILGQ 145
GILFS WFTYRYLLFKPDR+EL +I+ KSV+DILGQ
Sbjct: 121 GILFSTWFTYRYLLFKPDRQELSKIVKKSVADILGQ 156
>AT1G52220.2 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast thylakoid membrane, chloroplast; EXPRESSED
IN: 23 plant structures; EXPRESSED DURING: 13 growth
stages; BEST Arabidopsis thaliana protein match is:
photosystem I P subunit (TAIR:AT2G46820.2); Has 35333
Blast hits to 34131 proteins in 2444 species: Archae -
798; Bacteria - 22429; Metazoa - 974; Fungi - 991;
Plants - 531; Viruses - 0; Other Eukaryotes - 9610
(source: NCBI BLink). | chr1:19453770-19454605 REVERSE
LENGTH=155
Length = 155
Score = 161 bits (408), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 88/156 (56%), Positives = 104/156 (66%), Gaps = 12/156 (7%)
Query: 1 MASIAASLQPPLLLHGRKSHTGNFPSFPVSLLPGRRNL-----------IALVVKASGXX 49
MASI+A+L PLLL RKS+ + P SL G +L I+L+VKASG
Sbjct: 1 MASISATLPSPLLLTQRKSNLTSIQKLPFSLTRGTNDLSPLSLTRNPSSISLMVKASGES 60
Query: 50 XXXXXXXXXXXXXXNVWDKPEDRLGLIGFGFAGIVALWASANLITAVDQLPVLPTVLELI 109
N WDK EDRLGLIG GFAGIVALWAS NLITA+D+LPV+ + EL+
Sbjct: 61 SDSSTDLDVVSTIQN-WDKSEDRLGLIGLGFAGIVALWASLNLITAIDKLPVISSGFELV 119
Query: 110 GILFSVWFTYRYLLFKPDREELFQILNKSVSDILGQ 145
GILFS WFTYRYLLFKPDR+EL +I+ KSV+DILGQ
Sbjct: 120 GILFSTWFTYRYLLFKPDRQELSKIVKKSVADILGQ 155
>AT1G52220.3 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast thylakoid membrane, chloroplast; EXPRESSED
IN: 23 plant structures; EXPRESSED DURING: 13 growth
stages; BEST Arabidopsis thaliana protein match is:
photosystem I P subunit (TAIR:AT2G46820.2); Has 251
Blast hits to 251 proteins in 43 species: Archae - 0;
Bacteria - 66; Metazoa - 0; Fungi - 0; Plants - 184;
Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
| chr1:19453770-19454605 REVERSE LENGTH=127
Length = 127
Score = 99.8 bits (247), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 63/156 (40%), Positives = 79/156 (50%), Gaps = 40/156 (25%)
Query: 1 MASIAASLQPPLLLHGRKSHTGNFPSFPVSLLPGRRNL-----------IALVVKASGXX 49
MASI+A+L PLLL RKS+ + P SL G +L I+L+VKASG
Sbjct: 1 MASISATLPSPLLLTQRKSNLTSIQKLPFSLTRGTNDLSPLSLTRNPSSISLMVKASGES 60
Query: 50 XXXXXXXXXXXXXXNVWDKPEDRLGLIGFGFAGIVALWASANLITAVDQLPVLPTVLELI 109
NV A+D+LPV+ + EL+
Sbjct: 61 SDSSTDLDVVSTIQNV-----------------------------AIDKLPVISSGFELV 91
Query: 110 GILFSVWFTYRYLLFKPDREELFQILNKSVSDILGQ 145
GILFS WFTYRYLLFKPDR+EL +I+ KSV+DILGQ
Sbjct: 92 GILFSTWFTYRYLLFKPDRQELSKIVKKSVADILGQ 127
>AT2G46820.2 | Symbols: PTAC8, TMP14, PSAP, PSI-P | photosystem I P
subunit | chr2:19243729-19244870 FORWARD LENGTH=174
Length = 174
Score = 98.2 bits (243), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 41/82 (50%), Positives = 60/82 (73%)
Query: 64 NVWDKPEDRLGLIGFGFAGIVALWASANLITAVDQLPVLPTVLELIGILFSVWFTYRYLL 123
W+K +D+ + FAG+VALW SA +I+A+D+LP++P VLEL+GI ++ WFTY+ L+
Sbjct: 92 EAWEKVDDKYAIGSLAFAGVVALWGSAGMISAIDRLPLVPGVLELVGIGYTGWFTYKNLV 151
Query: 124 FKPDREELFQILNKSVSDILGQ 145
FKPDRE LF+ + + DILG
Sbjct: 152 FKPDREALFEKVKSTYKDILGS 173
>AT2G46820.1 | Symbols: PTAC8, TMP14, PSAP, PSI-P | photosystem I P
subunit | chr2:19243729-19244870 FORWARD LENGTH=174
Length = 174
Score = 98.2 bits (243), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 41/82 (50%), Positives = 60/82 (73%)
Query: 64 NVWDKPEDRLGLIGFGFAGIVALWASANLITAVDQLPVLPTVLELIGILFSVWFTYRYLL 123
W+K +D+ + FAG+VALW SA +I+A+D+LP++P VLEL+GI ++ WFTY+ L+
Sbjct: 92 EAWEKVDDKYAIGSLAFAGVVALWGSAGMISAIDRLPLVPGVLELVGIGYTGWFTYKNLV 151
Query: 124 FKPDREELFQILNKSVSDILGQ 145
FKPDRE LF+ + + DILG
Sbjct: 152 FKPDREALFEKVKSTYKDILGS 173
>AT4G01150.1 | Symbols: | unknown protein; FUNCTIONS IN:
molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: thylakoid,
chloroplast thylakoid membrane, chloroplast,
plastoglobule, chloroplast envelope; EXPRESSED IN: 23
plant structures; EXPRESSED DURING: 14 growth stages;
BEST Arabidopsis thaliana protein match is: unknown
protein (TAIR:AT4G38100.1); Has 323 Blast hits to 323
proteins in 59 species: Archae - 0; Bacteria - 107;
Metazoa - 0; Fungi - 0; Plants - 206; Viruses - 0; Other
Eukaryotes - 10 (source: NCBI BLink). |
chr4:493692-494668 FORWARD LENGTH=164
Length = 164
Score = 70.9 bits (172), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 52/80 (65%)
Query: 66 WDKPEDRLGLIGFGFAGIVALWASANLITAVDQLPVLPTVLELIGILFSVWFTYRYLLFK 125
WD E++ ++ +G IVA+W S+ ++ A++ +P+LP V+EL+G+ ++ WF YRYLLFK
Sbjct: 84 WDGLENKSTVLIYGGGAIVAVWLSSIVVGAINSVPLLPKVMELVGLGYTGWFVYRYLLFK 143
Query: 126 PDREELFQILNKSVSDILGQ 145
R+EL + + I G
Sbjct: 144 SSRKELAEDIESLKKKIAGS 163
>AT4G38100.1 | Symbols: | unknown protein; LOCATED IN: chloroplast
thylakoid membrane; EXPRESSED IN: 23 plant structures;
EXPRESSED DURING: 13 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT4G01150.1); Has 30201 Blast hits to 17322
proteins in 780 species: Archae - 12; Bacteria - 1396;
Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses -
0; Other Eukaryotes - 2996 (source: NCBI BLink). |
chr4:17887033-17888177 REVERSE LENGTH=193
Length = 193
Score = 62.0 bits (149), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 49/67 (73%)
Query: 78 FGFAGIVALWASANLITAVDQLPVLPTVLELIGILFSVWFTYRYLLFKPDREELFQILNK 137
+G IVAL+ ++ ++++++ +P+ P ++E++G+ +++WFT RYLLFK +REEL +++
Sbjct: 123 YGSGAIVALYLTSAIVSSLEAIPLFPKLMEVVGLGYTLWFTTRYLLFKRNREELKTKVSE 182
Query: 138 SVSDILG 144
+LG
Sbjct: 183 IKKQVLG 189