Miyakogusa Predicted Gene
- Lj0g3v0297599.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0297599.1 Non Chatacterized Hit- tr|D3B2U5|D3B2U5_POLPA
Putative RNA helicase OS=Polysphondylium pallidum
GN=d,24.93,4e-18,P-loop containing nucleoside triphosphate
hydrolases,NULL; DEAD,DNA/RNA helicase, DEAD/DEAH box
type,CUFF.19965.1
(556 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G28600.1 | Symbols: | P-loop containing nucleoside triphosph... 354 7e-98
AT1G31970.1 | Symbols: STRS1 | DEA(D/H)-box RNA helicase family ... 77 3e-14
AT5G63120.2 | Symbols: | P-loop containing nucleoside triphosph... 75 2e-13
AT1G55150.1 | Symbols: | DEA(D/H)-box RNA helicase family prote... 70 6e-12
AT1G20920.2 | Symbols: | P-loop containing nucleoside triphosph... 69 6e-12
AT1G20920.1 | Symbols: | P-loop containing nucleoside triphosph... 69 7e-12
AT5G14610.1 | Symbols: | DEAD box RNA helicase family protein |... 68 2e-11
AT5G14610.2 | Symbols: | DEAD box RNA helicase family protein |... 67 3e-11
AT2G47330.1 | Symbols: | P-loop containing nucleoside triphosph... 67 4e-11
AT3G01540.4 | Symbols: DRH1, ATDRH1 | DEAD box RNA helicase 1 | ... 65 1e-10
AT3G01540.3 | Symbols: DRH1, ATDRH1 | DEAD box RNA helicase 1 | ... 65 1e-10
AT3G01540.1 | Symbols: DRH1, ATDRH1 | DEAD box RNA helicase 1 | ... 65 1e-10
AT3G01540.2 | Symbols: DRH1, ATDRH1 | DEAD box RNA helicase 1 | ... 65 1e-10
AT3G06480.1 | Symbols: | DEAD box RNA helicase family protein |... 63 7e-10
AT3G09620.1 | Symbols: | P-loop containing nucleoside triphosph... 62 1e-09
AT3G61240.2 | Symbols: | DEA(D/H)-box RNA helicase family prote... 52 8e-07
AT3G61240.1 | Symbols: | DEA(D/H)-box RNA helicase family prote... 52 8e-07
AT1G28180.1 | Symbols: | P-loop containing nucleoside triphosph... 49 6e-06
>AT2G28600.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr2:12251845-12254672
FORWARD LENGTH=502
Length = 502
Score = 354 bits (909), Expect = 7e-98, Method: Compositional matrix adjust.
Identities = 185/407 (45%), Positives = 263/407 (64%), Gaps = 17/407 (4%)
Query: 150 GCEISEFPSKFVFWCLSAIENALRHGDAYTDGEGNSFFLNSWGLEFSKCYSTGKDLMDTS 209
G E + P KF+ L+ IE++ R Y++ S F +SWG+EF KCYS+G D++DTS
Sbjct: 99 GVEKMDGPPKFLMLNLNEIESSFRKDITYSEQHDKSLFTSSWGIEFWKCYSSGNDILDTS 158
Query: 210 GTSATTEQIAWVVSAAADTFVRKEKKG------LSFACPFLLFLVPSHEKAVQVRTVCKP 263
G S+T EQIAW+VS AAD R+EK L PFLL+LVPS KA QVR+VCK
Sbjct: 159 GMSSTVEQIAWIVSTAADAIARREKDEVEEEEELLGNSPFLLYLVPSQSKASQVRSVCKA 218
Query: 264 LKSVGIHTVSIHPGASLDHQIQGLRSCEPEFLVSTPERLLELISIKAIDISGISMLVIDG 323
LK +GIHTVS+H GA LDHQI GL+S EPEF+V+TPERLLE++++K +DIS +S+LVID
Sbjct: 219 LKGIGIHTVSLHQGAPLDHQISGLKSVEPEFIVATPERLLEIVTLKGVDISNVSLLVIDE 278
Query: 324 LNTIYSAGHTDTLKSIKKFISGNLRMVVFNDSFNHMSIPMVRYLLTGSICRLSVHNSITS 383
L ++ S G+ + +KSIK+ IS + +VFN+SF+ IP V+ L GS+ R++V+ S+ S
Sbjct: 279 LGSLCSGGYLNAVKSIKQAISSKHQTIVFNNSFSASIIPAVQSFLGGSVNRVTVNESVAS 338
Query: 384 LSSCIIQSVKVCTSEEDKLVQSVEVLDQFSSSGTQNSNLLYILRKDANCHKLVKALKSKG 443
SCI Q+V VC SEE KL + + LD + +S L+YI+ K+ + K++ LK KG
Sbjct: 339 QGSCITQTVSVCASEEKKLQKFAKHLD------SSSSKLIYIVTKEESFKKIMAILKLKG 392
Query: 444 CSISHSVMASSNDSVDLSNRLRPAVSVIDVEHISNVDIGTYDVIVLPYFVPSLDTYVHIL 503
S+S S S + ++ +P +ID E + + + ++LP F PS++ Y IL
Sbjct: 393 ISVSTS---SDSKLSEVKKSRKPVAHLIDFEQLDTTVMRDSETVLLPDFFPSIEIYTQIL 449
Query: 504 TKMARQSANGALHGFLKEGDVEV--AGPLIAILEQCGQEVPQDLQHL 548
T MAR+SA+G LH ++ E D AGPL+ +LE CGQ VP +++
Sbjct: 450 TSMARESAHGVLHSYITEKDAASYQAGPLVNVLENCGQNVPDRWRNM 496
>AT1G31970.1 | Symbols: STRS1 | DEA(D/H)-box RNA helicase family
protein | chr1:11479921-11482707 FORWARD LENGTH=537
Length = 537
Score = 77.0 bits (188), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 81/352 (23%), Positives = 167/352 (47%), Gaps = 14/352 (3%)
Query: 202 GKDLMDTSGTSATTEQIAWVVSAAADTFVRKEK--KGLSFACPFLLFLVPSHEKAVQVRT 259
G+DL+ + T + + +A+ + A + +K G P L L P+ E AVQ+
Sbjct: 151 GRDLIGIAKT-GSGKTLAFGIPAIMHVLKKNKKIGGGSKKVNPTCLVLSPTRELAVQISD 209
Query: 260 VCKPL-KSVGIHTVSIHPGASLDHQIQGLRSCEPEFLVSTPERLLELISIKAIDISGISM 318
V + + G+ ++ ++ G+S QI +RS + ++ TP RL +LI + +S +S
Sbjct: 210 VLREAGEPCGLKSICVYGGSSKGPQISAIRSG-VDIVIGTPGRLRDLIESNVLRLSDVSF 268
Query: 319 LVIDGLNTIYSAGHTDTLKSIKKFISGNLRMVVFNDSFNHMSIPMVRYLLTGSICRLSVH 378
+V+D + + G + ++ I + +MV+F+ ++ + + + + ++ +
Sbjct: 269 VVLDEADRMLDMGFEEPVRFILSNTNKVRQMVMFSATWPLDVHKLAQEFMDPNPIKVIIG 328
Query: 379 NSITSLSSCIIQSVKVCTSEEDKLVQSVEVLDQFSSSGTQNSNLLYILRKDANCHKLVKA 438
+ + + ++Q ++V E + + + +L+++ S +N L++ L K +L +
Sbjct: 329 SVDLAANHDVMQIIEVL-DERARDQRLIALLEKYHKS-QKNRVLVFALYK-VEAERLERF 385
Query: 439 LKSKGC-SIS-HSVMASSNDSVDLSNRLR---PAVSVIDVEHISNVDIGTYDVIVLPYFV 493
L+ +G ++S H A S + LS P + DV +DI +V++ F
Sbjct: 386 LQQRGWKAVSIHGNKAQSERTRSLSLFKEGSCPLLVATDVA-ARGLDIPDVEVVINYTFP 444
Query: 494 PSLDTYVHILTKMARQSANGALHGFLKEGDVEVAGPLIAILEQCGQEVPQDL 545
+ + YVH + + R G H F + +AG L+ +L + GQ VP DL
Sbjct: 445 LTTEDYVHRIGRTGRAGKKGVAHTFFTPLNKGLAGELVNVLREAGQVVPADL 496
>AT5G63120.2 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr5:25318967-25322071
REVERSE LENGTH=591
Length = 591
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 69/314 (21%), Positives = 141/314 (44%), Gaps = 16/314 (5%)
Query: 242 PFLLFLVPSHEKAVQVRTVCKP--LKSVGIHTVSIHPGASLDHQIQGLRSCEPEFLVSTP 299
P +L L P+ E AVQ++ + L+S G+ + I+ GA QI+ LR E +++TP
Sbjct: 239 PIVLILAPTRELAVQIQEESRKFGLRS-GVRSTCIYGGAPKGPQIRDLRRGV-EIVIATP 296
Query: 300 ERLLELISIKAIDISGISMLVIDGLNTIYSAGHTDTLKSIKKFISGNLRMVVFNDSFNHM 359
RL++++ + ++ ++ LV+D + + G ++ I I + + ++++ ++
Sbjct: 297 GRLIDMLECQHTNLKRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLLWSATWPRE 356
Query: 360 SIPMVRYLLTGSICRLSVHNSITSLSSCIIQSVKVCTSEEDKLVQSVEVLDQFSSSGTQN 419
+ R L + + ++ + I Q +++ + E K + + +L Q
Sbjct: 357 VETLARQFLRDPYKAI-IGSTDLKANQSINQVIEIVPTPE-KYNRLLTLLKQL----MDG 410
Query: 420 SNLLYILRKDANCHKLVKALKSKGC---SISHSVMASSNDSV--DLSNRLRPAVSVIDVE 474
S +L + C ++ + L+ G +I S D V + + P ++ DV
Sbjct: 411 SKILIFVETKRGCDQVTRQLRMDGWPALAIHGDKTQSERDRVLAEFKSGRSPIMTATDVA 470
Query: 475 HISNVDIGTYDVIVLPYFVPSLDTYVHILTKMARQSANGALHGFLKEGDVEVAGPLIAIL 534
+D+ +V F +L+ Y+H + + R A G F + + A L+ IL
Sbjct: 471 -ARGLDVKDIKCVVNYDFPNTLEDYIHRIGRTGRAGAKGMAFTFFTHDNAKFARELVKIL 529
Query: 535 EQCGQEVPQDLQHL 548
++ GQ VP L L
Sbjct: 530 QEAGQVVPPTLSAL 543
>AT1G55150.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr1:20574634-20577141 FORWARD LENGTH=501
Length = 501
Score = 69.7 bits (169), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 69/313 (22%), Positives = 135/313 (43%), Gaps = 14/313 (4%)
Query: 242 PFLLFLVPSHEKAVQVRTVCKPL-KSVGIHTVSIHPGASLDHQIQGLRSCEPEFLVSTPE 300
P +L L P+ E AVQ++ S I T I+ G Q++ L+ E +++TP
Sbjct: 173 PIVLVLAPTRELAVQIQQEASKFGSSSKIKTTCIYGGVPKGPQVRDLQKGV-EIVIATPG 231
Query: 301 RLLELISIKAIDISGISMLVIDGLNTIYSAGHTDTLKSIKKFISGNLRMVVFNDSFNHMS 360
RL++++ ++ ++ LV+D + + G ++ I I + + + ++ ++
Sbjct: 232 RLIDMMESNNTNLRRVTYLVLDEADRMLDMGFDPQIRKIVSHIRPDRQTLYWSATWPKEV 291
Query: 361 IPMVRYLLTGSICRLSVHNSITSLSSCIIQSVKVCTSEEDKLVQSVEVLDQFSSSGTQNS 420
+ + L ++ + +S + I Q V V SE K + V++L+ S
Sbjct: 292 EQLSKKFLYNP-YKVIIGSSDLKANRAIRQIVDVI-SESQKYNKLVKLLEDI----MDGS 345
Query: 421 NLLYILRKDANCHKLVKALKSKGC---SISHSVMASSNDSV--DLSNRLRPAVSVIDVEH 475
+L L C ++ + L+ G SI + D V + + P ++ DV
Sbjct: 346 RILVFLDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFRSGKSPIMTATDV-A 404
Query: 476 ISNVDIGTYDVIVLPYFVPSLDTYVHILTKMARQSANGALHGFLKEGDVEVAGPLIAILE 535
+D+ ++ F SL+ YVH + + R A G + F + A L IL+
Sbjct: 405 ARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTVANARFAKELTNILQ 464
Query: 536 QCGQEVPQDLQHL 548
+ GQ+V +L +
Sbjct: 465 EAGQKVSPELASM 477
>AT1G20920.2 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr1:7286356-7288842
FORWARD LENGTH=828
Length = 828
Score = 69.3 bits (168), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 72/325 (22%), Positives = 140/325 (43%), Gaps = 32/325 (9%)
Query: 242 PFLLFLVPSHEKAVQV----RTVCKPLKSVGIHTVSIHPGASLDHQIQGLRSCEPEFLVS 297
P L + P+ E Q+ R KPL GI V ++ G+ + QI L+ E +V
Sbjct: 265 PIGLVMAPTRELVQQIHSDIRKFSKPL---GIRCVPVYGGSGVAQQISELKRGT-EIVVC 320
Query: 298 TPERLLELI---SIKAIDISGISMLVIDGLNTIYSAGHTDTLKSIKKFISGNLRMVVFND 354
TP R+++++ S K ++ ++ LV+D + ++ G + I + I + V+F+
Sbjct: 321 TPGRMIDILCTSSGKITNLRRVTFLVMDEADRMFDMGFEPQITRIIQNIRPERQTVLFSA 380
Query: 355 SFNHMSIPMVRYLLTGSI-----CRLSVHNSITSLSSCIIQSVKVCTSEEDKLVQSVEVL 409
+F + R +L + R V+ IT L E D+ ++ +E+L
Sbjct: 381 TFPRQVETLARKVLNKPVEIQVGGRSVVNKDITQLVEV--------RPESDRFLRLLELL 432
Query: 410 DQFSSSGTQNSNLLYILRKDANCHKLVKAL--KSKGCSISHSVMASSNDSVDLSNRLRPA 467
++S G +L ++ C L + + S C H ++ +S+
Sbjct: 433 GEWSEKG----KILVFVQSQEKCDALYRDMIKSSYPCLSLHGGKDQTDRESTISDFKNDV 488
Query: 468 VSVIDVEHISNVDIGTYDV-IVLPYFVPS-LDTYVHILTKMARQSANGALHGFLKEGDVE 525
+++ ++ + ++ +V+ + P+ + YVH + + R G F+ E D +
Sbjct: 489 CNLLIATSVAARGLDVKELELVVNFDAPNHYEDYVHRVGRTGRAGRKGCAVTFISEDDAK 548
Query: 526 VAGPLIAILEQCGQEVPQDLQHLHN 550
A L+ LE Q VP DL+ L +
Sbjct: 549 YAPDLVKALELSEQPVPDDLKALAD 573
>AT1G20920.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr1:7285342-7288842
FORWARD LENGTH=1166
Length = 1166
Score = 69.3 bits (168), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 72/323 (22%), Positives = 140/323 (43%), Gaps = 32/323 (9%)
Query: 242 PFLLFLVPSHEKAVQV----RTVCKPLKSVGIHTVSIHPGASLDHQIQGLRSCEPEFLVS 297
P L + P+ E Q+ R KPL GI V ++ G+ + QI L+ E +V
Sbjct: 603 PIGLVMAPTRELVQQIHSDIRKFSKPL---GIRCVPVYGGSGVAQQISELKRG-TEIVVC 658
Query: 298 TPERLLELI---SIKAIDISGISMLVIDGLNTIYSAGHTDTLKSIKKFISGNLRMVVFND 354
TP R+++++ S K ++ ++ LV+D + ++ G + I + I + V+F+
Sbjct: 659 TPGRMIDILCTSSGKITNLRRVTFLVMDEADRMFDMGFEPQITRIIQNIRPERQTVLFSA 718
Query: 355 SFNHMSIPMVRYLLTGSI-----CRLSVHNSITSLSSCIIQSVKVCTSEEDKLVQSVEVL 409
+F + R +L + R V+ IT L +S D+ ++ +E+L
Sbjct: 719 TFPRQVETLARKVLNKPVEIQVGGRSVVNKDITQLVEVRPES--------DRFLRLLELL 770
Query: 410 DQFSSSGTQNSNLLYILRKDANCHKLVKAL--KSKGCSISHSVMASSNDSVDLSNRLRPA 467
++S G +L ++ C L + + S C H ++ +S+
Sbjct: 771 GEWSEKG----KILVFVQSQEKCDALYRDMIKSSYPCLSLHGGKDQTDRESTISDFKNDV 826
Query: 468 VSVIDVEHISNVDIGTYDV-IVLPYFVPS-LDTYVHILTKMARQSANGALHGFLKEGDVE 525
+++ ++ + ++ +V+ + P+ + YVH + + R G F+ E D +
Sbjct: 827 CNLLIATSVAARGLDVKELELVVNFDAPNHYEDYVHRVGRTGRAGRKGCAVTFISEDDAK 886
Query: 526 VAGPLIAILEQCGQEVPQDLQHL 548
A L+ LE Q VP DL+ L
Sbjct: 887 YAPDLVKALELSEQPVPDDLKAL 909
>AT5G14610.1 | Symbols: | DEAD box RNA helicase family protein |
chr5:4711271-4714713 FORWARD LENGTH=712
Length = 712
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 74/320 (23%), Positives = 137/320 (42%), Gaps = 28/320 (8%)
Query: 242 PFLLFLVPSHEKAVQVRT-VCKPLKSVGIHTVSIHPGASLDHQIQGLRSCEPEFLVSTPE 300
P +L L P+ E A Q++ K KS I ++ GA Q++ + + +V+TP
Sbjct: 302 PTILVLSPTRELATQIQVEALKFGKSSKISCACLYGGAPKGPQLKEIERGV-DIVVATPG 360
Query: 301 RLLELISIKAIDISGISMLVIDGLNTIYSAGHTDTLKSIKKFISGNLRMVVFNDSFNHMS 360
RL +++ +K I + +S LV+D + + G ++ I + + +++ ++
Sbjct: 361 RLNDILEMKRISLHQVSYLVLDEADRMLDMGFEPQIRKIVNEVPTKRQTLMYTATWPKEV 420
Query: 361 IPMVRYLLT-------GSICRLSVHNSITSLSSCIIQSVKVCTSEEDKLVQSVEVLDQFS 413
+ LL G++ L + SIT Q+++V E L+Q
Sbjct: 421 RKIAADLLVNPAQVNIGNVDELVANKSIT-------QTIEVLAPMEKH-----SRLEQIL 468
Query: 414 SSGTQNSNLLYILRKDANCHKLVKAL-KSKGCSISHSVMASSNDSVDLSNRLR----PAV 468
S S ++ C +L + L ++ G + H S + D+ N+ R P +
Sbjct: 469 RSQEPGSKIIIFCSTKRMCDQLARNLTRTFGAAAIHGD-KSQAERDDVLNQFRSGRTPVL 527
Query: 469 SVIDVEHISNVDIGTYDVIVLPYFVPSLDTYVHILTKMARQSANGALHGFLKEGDVEVAG 528
DV +D+ V+V F ++ YVH + + R A G + F + D + A
Sbjct: 528 VATDVA-ARGLDVKDIRVVVNYDFPNGVEDYVHRIGRTGRAGATGLAYTFFGDQDAKHAS 586
Query: 529 PLIAILEQCGQEVPQDLQHL 548
LI ILE Q+VP ++ +
Sbjct: 587 DLIKILEGANQKVPPQVREM 606
>AT5G14610.2 | Symbols: | DEAD box RNA helicase family protein |
chr5:4711271-4714713 FORWARD LENGTH=645
Length = 645
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 74/320 (23%), Positives = 137/320 (42%), Gaps = 28/320 (8%)
Query: 242 PFLLFLVPSHEKAVQVRT-VCKPLKSVGIHTVSIHPGASLDHQIQGLRSCEPEFLVSTPE 300
P +L L P+ E A Q++ K KS I ++ GA Q++ + + +V+TP
Sbjct: 234 PTILVLSPTRELATQIQVEALKFGKSSKISCACLYGGAPKGPQLKEIERGV-DIVVATPG 292
Query: 301 RLLELISIKAIDISGISMLVIDGLNTIYSAGHTDTLKSIKKFISGNLRMVVFNDSFNHMS 360
RL +++ +K I + +S LV+D + + G ++ I + + +++ ++
Sbjct: 293 RLNDILEMKRISLHQVSYLVLDEADRMLDMGFEPQIRKIVNEVPTKRQTLMYTATWPKEV 352
Query: 361 IPMVRYLLT-------GSICRLSVHNSITSLSSCIIQSVKVCTSEEDKLVQSVEVLDQFS 413
+ LL G++ L + SIT Q+++V E L+Q
Sbjct: 353 RKIAADLLVNPAQVNIGNVDELVANKSIT-------QTIEVLAPMEKH-----SRLEQIL 400
Query: 414 SSGTQNSNLLYILRKDANCHKLVKAL-KSKGCSISHSVMASSNDSVDLSNRLR----PAV 468
S S ++ C +L + L ++ G + H S + D+ N+ R P +
Sbjct: 401 RSQEPGSKIIIFCSTKRMCDQLARNLTRTFGAAAIHGD-KSQAERDDVLNQFRSGRTPVL 459
Query: 469 SVIDVEHISNVDIGTYDVIVLPYFVPSLDTYVHILTKMARQSANGALHGFLKEGDVEVAG 528
DV +D+ V+V F ++ YVH + + R A G + F + D + A
Sbjct: 460 VATDVA-ARGLDVKDIRVVVNYDFPNGVEDYVHRIGRTGRAGATGLAYTFFGDQDAKHAS 518
Query: 529 PLIAILEQCGQEVPQDLQHL 548
LI ILE Q+VP ++ +
Sbjct: 519 DLIKILEGANQKVPPQVREM 538
>AT2G47330.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr2:19429083-19431617
REVERSE LENGTH=760
Length = 760
Score = 67.0 bits (162), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 73/329 (22%), Positives = 144/329 (43%), Gaps = 45/329 (13%)
Query: 242 PFLLFLVPSHEKAVQVRTVCKPL-KSVGIHTVSIHPGASLDHQIQGLRS-CEPEFLVSTP 299
P + P+ E A Q+ K K+ G+ +++ G S Q + L++ CE +V+TP
Sbjct: 302 PIGVICAPTRELAHQIFLEAKKFSKAYGLRVSAVYGGMSKHEQFKELKAGCE--IVVATP 359
Query: 300 ERLLELISIKAIDISGISMLVIDGLNTIYSAGHTDTLKSIKKFISGNLRMVVFNDSFNHM 359
RL++++ +KA+ + S LV+D + ++ G ++SI I + + ++F+ +
Sbjct: 360 GRLIDMLKMKALTMMRASYLVLDEADRMFDLGFEPQVRSIVGQIRPDRQTLLFSATMPWK 419
Query: 360 SIPMVRYLLTGSICRLSVHNSITSLSSCIIQSVKVCTSEEDKLVQSVEVL---------- 409
+ R +L+ I R++V + + I Q V V S+ +KL +E L
Sbjct: 420 VEKLAREILSDPI-RVTV-GEVGMANEDITQVVNVIPSDAEKLPWLLEKLPGMIDEGDVL 477
Query: 410 ---------DQFSSSGTQNSNLLYILRKDANCHKLVKALKSKGCSISHSVMASSNDSVDL 460
D+ + T NS + L D + ++ L+ + H ++A+ D+
Sbjct: 478 VFASKKATVDEIEAQLTLNSFKVAALHGDKDQASRMETLQKFKSGVHHVLIAT-----DV 532
Query: 461 SNRLRPAVSVIDVEHISNVDIGTYDVIVLPYFVPSLDTYVHILTKMARQ-SANGALHGFL 519
+ R + + ++ + N DI +D +VH + + R +G + +
Sbjct: 533 AAR---GLDIKSLKTVVNYDIAK-----------DMDMHVHRIGRTGRAGDRDGVAYTLV 578
Query: 520 KEGDVEVAGPLIAILEQCGQEVPQDLQHL 548
+ + AG L+ L GQ VP +L L
Sbjct: 579 TQREARFAGELVNSLVAAGQNVPPELTDL 607
>AT3G01540.4 | Symbols: DRH1, ATDRH1 | DEAD box RNA helicase 1 |
chr3:213077-216142 REVERSE LENGTH=619
Length = 619
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 72/319 (22%), Positives = 133/319 (41%), Gaps = 26/319 (8%)
Query: 242 PFLLFLVPSHEKAVQVRT-VCKPLKSVGIHTVSIHPGASLDHQIQGLRSCEPEFLVSTPE 300
P +L L P+ E A Q++ K +S I ++ GA Q++ L + +V+TP
Sbjct: 231 PTILVLSPTRELATQIQEEAVKFGRSSRISCTCLYGGAPKGPQLRDLERGA-DIVVATPG 289
Query: 301 RLLELISIKAIDISGISMLVIDGLNTIYSAGHTDTLKSIKKFISGNLRMVVFNDSFNHMS 360
RL +++ ++ I + IS LV+D + + G ++ I K I + +++ ++
Sbjct: 290 RLNDILEMRRISLRQISYLVLDEADRMLDMGFEPQIRKIVKEIPTKRQTLMYTATWPKGV 349
Query: 361 IPMVRYLLT-------GSICRLSVHNSITSLSSCIIQSVKVCTSEEDKLVQSVEVLDQFS 413
+ LL G++ L + SIT Q ++V E + L+Q
Sbjct: 350 RKIAADLLVNPAQVNIGNVDELVANKSIT-------QHIEVVAPMEKQ-----RRLEQIL 397
Query: 414 SSGTQNSNLLYILRKDANCHKLVKALKSKGCSISHSVMASSNDSVDLSNRLR----PAVS 469
S S ++ C +L + L + + + S + ++ N+ R P +
Sbjct: 398 RSQEPGSKVIIFCSTKRMCDQLTRNLTRQFGAAAIHGDKSQPERDNVLNQFRSGRTPVLV 457
Query: 470 VIDVEHISNVDIGTYDVIVLPYFVPSLDTYVHILTKMARQSANGALHGFLKEGDVEVAGP 529
DV +D+ +V F ++ YVH + + R A G F + D + A
Sbjct: 458 ATDVA-ARGLDVKDIRAVVNYDFPNGVEDYVHRIGRTGRAGATGQAFTFFGDQDSKHASD 516
Query: 530 LIAILEQCGQEVPQDLQHL 548
LI ILE Q VP ++ +
Sbjct: 517 LIKILEGANQRVPPQIREM 535
>AT3G01540.3 | Symbols: DRH1, ATDRH1 | DEAD box RNA helicase 1 |
chr3:213077-216142 REVERSE LENGTH=619
Length = 619
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 72/319 (22%), Positives = 133/319 (41%), Gaps = 26/319 (8%)
Query: 242 PFLLFLVPSHEKAVQVRT-VCKPLKSVGIHTVSIHPGASLDHQIQGLRSCEPEFLVSTPE 300
P +L L P+ E A Q++ K +S I ++ GA Q++ L + +V+TP
Sbjct: 231 PTILVLSPTRELATQIQEEAVKFGRSSRISCTCLYGGAPKGPQLRDLERGA-DIVVATPG 289
Query: 301 RLLELISIKAIDISGISMLVIDGLNTIYSAGHTDTLKSIKKFISGNLRMVVFNDSFNHMS 360
RL +++ ++ I + IS LV+D + + G ++ I K I + +++ ++
Sbjct: 290 RLNDILEMRRISLRQISYLVLDEADRMLDMGFEPQIRKIVKEIPTKRQTLMYTATWPKGV 349
Query: 361 IPMVRYLLT-------GSICRLSVHNSITSLSSCIIQSVKVCTSEEDKLVQSVEVLDQFS 413
+ LL G++ L + SIT Q ++V E + L+Q
Sbjct: 350 RKIAADLLVNPAQVNIGNVDELVANKSIT-------QHIEVVAPMEKQ-----RRLEQIL 397
Query: 414 SSGTQNSNLLYILRKDANCHKLVKALKSKGCSISHSVMASSNDSVDLSNRLR----PAVS 469
S S ++ C +L + L + + + S + ++ N+ R P +
Sbjct: 398 RSQEPGSKVIIFCSTKRMCDQLTRNLTRQFGAAAIHGDKSQPERDNVLNQFRSGRTPVLV 457
Query: 470 VIDVEHISNVDIGTYDVIVLPYFVPSLDTYVHILTKMARQSANGALHGFLKEGDVEVAGP 529
DV +D+ +V F ++ YVH + + R A G F + D + A
Sbjct: 458 ATDVA-ARGLDVKDIRAVVNYDFPNGVEDYVHRIGRTGRAGATGQAFTFFGDQDSKHASD 516
Query: 530 LIAILEQCGQEVPQDLQHL 548
LI ILE Q VP ++ +
Sbjct: 517 LIKILEGANQRVPPQIREM 535
>AT3G01540.1 | Symbols: DRH1, ATDRH1 | DEAD box RNA helicase 1 |
chr3:213077-216142 REVERSE LENGTH=618
Length = 618
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 72/319 (22%), Positives = 133/319 (41%), Gaps = 26/319 (8%)
Query: 242 PFLLFLVPSHEKAVQVRT-VCKPLKSVGIHTVSIHPGASLDHQIQGLRSCEPEFLVSTPE 300
P +L L P+ E A Q++ K +S I ++ GA Q++ L + +V+TP
Sbjct: 231 PTILVLSPTRELATQIQEEAVKFGRSSRISCTCLYGGAPKGPQLRDLERGA-DIVVATPG 289
Query: 301 RLLELISIKAIDISGISMLVIDGLNTIYSAGHTDTLKSIKKFISGNLRMVVFNDSFNHMS 360
RL +++ ++ I + IS LV+D + + G ++ I K I + +++ ++
Sbjct: 290 RLNDILEMRRISLRQISYLVLDEADRMLDMGFEPQIRKIVKEIPTKRQTLMYTATWPKGV 349
Query: 361 IPMVRYLLT-------GSICRLSVHNSITSLSSCIIQSVKVCTSEEDKLVQSVEVLDQFS 413
+ LL G++ L + SIT Q ++V E + L+Q
Sbjct: 350 RKIAADLLVNPAQVNIGNVDELVANKSIT-------QHIEVVAPMEKQ-----RRLEQIL 397
Query: 414 SSGTQNSNLLYILRKDANCHKLVKALKSKGCSISHSVMASSNDSVDLSNRLR----PAVS 469
S S ++ C +L + L + + + S + ++ N+ R P +
Sbjct: 398 RSQEPGSKVIIFCSTKRMCDQLTRNLTRQFGAAAIHGDKSQPERDNVLNQFRSGRTPVLV 457
Query: 470 VIDVEHISNVDIGTYDVIVLPYFVPSLDTYVHILTKMARQSANGALHGFLKEGDVEVAGP 529
DV +D+ +V F ++ YVH + + R A G F + D + A
Sbjct: 458 ATDVA-ARGLDVKDIRAVVNYDFPNGVEDYVHRIGRTGRAGATGQAFTFFGDQDSKHASD 516
Query: 530 LIAILEQCGQEVPQDLQHL 548
LI ILE Q VP ++ +
Sbjct: 517 LIKILEGANQRVPPQIREM 535
>AT3G01540.2 | Symbols: DRH1, ATDRH1 | DEAD box RNA helicase 1 |
chr3:213077-216142 REVERSE LENGTH=619
Length = 619
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 72/319 (22%), Positives = 133/319 (41%), Gaps = 26/319 (8%)
Query: 242 PFLLFLVPSHEKAVQVRT-VCKPLKSVGIHTVSIHPGASLDHQIQGLRSCEPEFLVSTPE 300
P +L L P+ E A Q++ K +S I ++ GA Q++ L + +V+TP
Sbjct: 231 PTILVLSPTRELATQIQEEAVKFGRSSRISCTCLYGGAPKGPQLRDLERGA-DIVVATPG 289
Query: 301 RLLELISIKAIDISGISMLVIDGLNTIYSAGHTDTLKSIKKFISGNLRMVVFNDSFNHMS 360
RL +++ ++ I + IS LV+D + + G ++ I K I + +++ ++
Sbjct: 290 RLNDILEMRRISLRQISYLVLDEADRMLDMGFEPQIRKIVKEIPTKRQTLMYTATWPKGV 349
Query: 361 IPMVRYLLT-------GSICRLSVHNSITSLSSCIIQSVKVCTSEEDKLVQSVEVLDQFS 413
+ LL G++ L + SIT Q ++V E + L+Q
Sbjct: 350 RKIAADLLVNPAQVNIGNVDELVANKSIT-------QHIEVVAPMEKQ-----RRLEQIL 397
Query: 414 SSGTQNSNLLYILRKDANCHKLVKALKSKGCSISHSVMASSNDSVDLSNRLR----PAVS 469
S S ++ C +L + L + + + S + ++ N+ R P +
Sbjct: 398 RSQEPGSKVIIFCSTKRMCDQLTRNLTRQFGAAAIHGDKSQPERDNVLNQFRSGRTPVLV 457
Query: 470 VIDVEHISNVDIGTYDVIVLPYFVPSLDTYVHILTKMARQSANGALHGFLKEGDVEVAGP 529
DV +D+ +V F ++ YVH + + R A G F + D + A
Sbjct: 458 ATDVA-ARGLDVKDIRAVVNYDFPNGVEDYVHRIGRTGRAGATGQAFTFFGDQDSKHASD 516
Query: 530 LIAILEQCGQEVPQDLQHL 548
LI ILE Q VP ++ +
Sbjct: 517 LIKILEGANQRVPPQIREM 535
>AT3G06480.1 | Symbols: | DEAD box RNA helicase family protein |
chr3:1985697-1989666 REVERSE LENGTH=1088
Length = 1088
Score = 62.8 bits (151), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 73/320 (22%), Positives = 134/320 (41%), Gaps = 28/320 (8%)
Query: 242 PFLLFLVPSHEKAVQVR-TVCKPLKSVGIHTVSIHPGASLDHQIQGLRSCEPEFLVSTPE 300
P +L L P+ E A Q++ + +S I ++ GA Q++ L + +V+TP
Sbjct: 508 PTVLILAPTRELATQIQDEALRFGRSSRISCTCLYGGAPKGPQLKELERGA-DIVVATPG 566
Query: 301 RLLELISIKAIDISGISMLVIDGLNTIYSAGHTDTLKSIKKFISGNLRMVVFNDSFNHMS 360
RL +++ +K ID +S+LV+D + + G ++ I I + +++ ++
Sbjct: 567 RLNDILEMKMIDFQQVSLLVLDEADRMLDMGFEPQIRKIVNEIPPRRQTLMYTATWPKEV 626
Query: 361 IPMVRYLLT-------GSICRLSVHNSITSLSSCIIQSVKVCTSEEDKLVQSVEVLDQFS 413
+ LL G + L+ + +IT Q V+V E + L+Q
Sbjct: 627 RKIASDLLVNPVQVNIGRVDELAANKAIT-------QYVEVVPQMEKE-----RRLEQIL 674
Query: 414 SSGTQNSNLLYILRKDANCHKLVKAL-KSKGCSISHSVMASSNDSVDLSNRLRPAVSVI- 471
S + S ++ C L +++ + G + H L N+ R S +
Sbjct: 675 RSQERGSKVIIFCSTKRLCDHLARSVGRHFGAVVIHGDKTQGERDWVL-NQFRSGKSCVL 733
Query: 472 ---DVEHISNVDIGTYDVIVLPYFVPSLDTYVHILTKMARQSANGALHGFLKEGDVEVAG 528
DV +DI V++ F ++ YVH + + R A G F E D + A
Sbjct: 734 IATDVA-ARGLDIKDIRVVINYDFPTGVEDYVHRIGRTGRAGATGVAFTFFTEQDWKYAP 792
Query: 529 PLIAILEQCGQEVPQDLQHL 548
LI +LE Q+VP ++ +
Sbjct: 793 DLIKVLEGANQQVPPQVRDI 812
>AT3G09620.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr3:2949152-2952205
REVERSE LENGTH=989
Length = 989
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 71/316 (22%), Positives = 133/316 (42%), Gaps = 51/316 (16%)
Query: 242 PFLLFLVPSHEKAVQVRTVCKPL-KSVGIHTVSIHPGASLDHQIQGLRSCEPEFLVSTPE 300
P L + P+ E Q+ + + K++GI V ++ G+ + QI L+ E +V TP
Sbjct: 470 PIGLVMAPTRELVQQIYSDIRKFSKALGIICVPVYGGSGVAQQISELKRG-TEIVVCTPG 528
Query: 301 RLLELI---SIKAIDISGISMLVIDGLNTIYSAGHTDTLKSIKKFISGNLRMVVFNDSFN 357
R+++++ S K ++ ++ LV+D + ++ G + I + I + + V+F+ +F
Sbjct: 529 RMIDILCTSSGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFP 588
Query: 358 HMSIPMVRYLLTGSI-----CRLSVHNSITSLSSCIIQSVKVCTSEEDKLVQSVEVLDQF 412
+ R +L + R V+ IT L E ++ + +E+L ++
Sbjct: 589 RQVETLARKVLNKPVEIQVGGRSVVNKDITQLVE--------IRPESERFSRLLELLGEW 640
Query: 413 SSSGTQNSNLLYILRKDANCHKLVKALKSKGCS--ISHSVMASSNDSVDLSNRLRPAVSV 470
G +L +R + K + KS C+ I+ SV A D V
Sbjct: 641 YEKG----KVLVFVR---SQEKSISDFKSDVCNLLIATSVAARGLD-------------V 680
Query: 471 IDVEHISNVDIGTYDVIVLPYFVPSLDTYVHILTKMARQSANGALHGFLKEGDVEVAGPL 530
++E + N D + + YVH + + R G F+ E D + A L
Sbjct: 681 KELELVVNFDAPNH-----------YEDYVHRVGRTGRAGRKGCAVTFISEDDAKYAPDL 729
Query: 531 IAILEQCGQEVPQDLQ 546
+ LE Q VP D++
Sbjct: 730 VKALELSEQPVPDDVK 745
>AT3G61240.2 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr3:22666590-22669154 FORWARD LENGTH=498
Length = 498
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 60/114 (52%), Gaps = 4/114 (3%)
Query: 245 LFLVPSHEKAVQVRTVCKPL-KSVGIHTVSIHPGASLDHQIQGLRSCEP-EFLVSTPERL 302
+ LVP+ E A+Q VCK L K + I + G SL I +R +P LV TP R+
Sbjct: 196 MILVPTRELALQTSQVCKELSKYLNIQVMVTTGGTSLRDDI--MRLHQPVHLLVGTPGRI 253
Query: 303 LELISIKAIDISGISMLVIDGLNTIYSAGHTDTLKSIKKFISGNLRMVVFNDSF 356
L+L + +MLV+D + + SA +L+ + +F+ N + ++F+ +F
Sbjct: 254 LDLTKKGVCVLKDCAMLVMDEADKLLSAEFQPSLEELIQFLPQNRQFLMFSATF 307
>AT3G61240.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr3:22666590-22669154 FORWARD LENGTH=498
Length = 498
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 60/114 (52%), Gaps = 4/114 (3%)
Query: 245 LFLVPSHEKAVQVRTVCKPL-KSVGIHTVSIHPGASLDHQIQGLRSCEP-EFLVSTPERL 302
+ LVP+ E A+Q VCK L K + I + G SL I +R +P LV TP R+
Sbjct: 196 MILVPTRELALQTSQVCKELSKYLNIQVMVTTGGTSLRDDI--MRLHQPVHLLVGTPGRI 253
Query: 303 LELISIKAIDISGISMLVIDGLNTIYSAGHTDTLKSIKKFISGNLRMVVFNDSF 356
L+L + +MLV+D + + SA +L+ + +F+ N + ++F+ +F
Sbjct: 254 LDLTKKGVCVLKDCAMLVMDEADKLLSAEFQPSLEELIQFLPQNRQFLMFSATF 307
>AT1G28180.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr1:9843084-9845002
REVERSE LENGTH=614
Length = 614
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 69/324 (21%), Positives = 136/324 (41%), Gaps = 28/324 (8%)
Query: 242 PFLLFLVPSHEKAVQVRT-VCKPLKSVGIHTVSIHPGASLDHQIQGL-RSCEPEFLVSTP 299
P+ L +VP+ E A Q+ K + +G VSI S++ Q L + CE +++TP
Sbjct: 279 PYALVMVPTRELAHQIEEETVKFSRYLGFKAVSITGWESIEKQALKLSQGCE--IVIATP 336
Query: 300 ERLLELISIKAIDISGISMLVIDGLNTIYSAGHTDTLKSIKKFIS-GNLRMVVFNDSFNH 358
RLL+ + + + ++ + LV+D + + + + + NL+ ++
Sbjct: 337 GRLLDCLERRYVVLNQCNYLVLDEADRMIDMDFEPQVSEVLDVMPCSNLKPEKEDEELEE 396
Query: 359 MSIPMVRYLLTGSICRLSVHN------------SITSLSSCIIQSVKVCTSEEDKLVQSV 406
I Y+ + ++ LSV +I + I Q V + T E DK +
Sbjct: 397 KKIYRTTYMFSATML-LSVERLARKFLRNPVVVTIGETTKFITQQV-IMTKESDKFSRLK 454
Query: 407 EVLDQFSSSGTQNSNLLYILRKDANCHKLVKALKSKG-CSIS--HSVMASSNDSVDLSNR 463
+++D G + ++++ ++ +VK L+ G C ++ H+ + L
Sbjct: 455 KLIDDL---GDDKTAIVFVNTRN-KVDYIVKNLEKVGRCRVTTLHAGKSQEQRDYSLEEF 510
Query: 464 LRPAVSVIDVEHISNVDIGTYDVI-VLPYFVP-SLDTYVHILTKMARQSANGALHGFLKE 521
+ +V+ + + D+ V+ Y +P ++D Y H + + R G FL
Sbjct: 511 KKKRFNVLVTTDVLGRGLDILDLAQVINYDMPNTMDLYTHRIGRTGRAGKTGVATTFLTL 570
Query: 522 GDVEVAGPLIAILEQCGQEVPQDL 545
D +V L L +C VP +L
Sbjct: 571 EDKDVFYGLKQKLNECNSLVPPEL 594