Miyakogusa Predicted Gene

Lj0g3v0295039.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0295039.1 Non Chatacterized Hit- tr|J3L3G8|J3L3G8_ORYBR
Uncharacterized protein OS=Oryza brachyantha
GN=OB01G3,100,0.0000000000005, ,CUFF.19765.1
         (63 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G69830.1 | Symbols: ATAMY3, AMY3 | alpha-amylase-like 3 | chr...    75   1e-14
AT1G76130.1 | Symbols: ATAMY2, AMY2 | alpha-amylase-like 2 | chr...    52   1e-07

>AT1G69830.1 | Symbols: ATAMY3, AMY3 | alpha-amylase-like 3 |
           chr1:26288518-26293003 REVERSE LENGTH=887
          Length = 887

 Score = 74.7 bits (182), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 31/34 (91%), Positives = 33/34 (97%)

Query: 30  GRGNKSSGDNFHAAPNIDHSQEFVRNDLKEWLCW 63
           GRGNKSSGDNFHAAPNIDHSQ+FVR D+KEWLCW
Sbjct: 620 GRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCW 653


>AT1G76130.1 | Symbols: ATAMY2, AMY2 | alpha-amylase-like 2 |
           chr1:28561647-28563914 FORWARD LENGTH=413
          Length = 413

 Score = 51.6 bits (122), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 20/34 (58%), Positives = 26/34 (76%)

Query: 30  GRGNKSSGDNFHAAPNIDHSQEFVRNDLKEWLCW 63
           G GN+S+GDNF+  PN+DH+Q FVR D+  WL W
Sbjct: 147 GLGNRSTGDNFNGVPNVDHTQHFVRKDIIGWLRW 180