Miyakogusa Predicted Gene
- Lj0g3v0290539.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0290539.1 Non Characterized Hit- tr|I1LM18|I1LM18_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.20626
PE,83.94,0,seg,NULL; SUBFAMILY NOT NAMED,NULL; FAMILY NOT NAMED,NULL;
PORR,Plant organelle RNA recognition doma,CUFF.19421.1
(416 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr3g063230.1 | plant organelle RNA recognition domain protein... 672 0.0
Medtr3g063230.2 | plant organelle RNA recognition domain protein... 612 e-175
Medtr7g088530.1 | plant organelle RNA recognition domain protein... 227 1e-59
Medtr6g033595.1 | plant organelle RNA recognition domain protein... 203 3e-52
Medtr2g067960.1 | plant organelle RNA recognition domain protein... 166 4e-41
Medtr1g032380.1 | plant organelle RNA recognition domain protein... 140 2e-33
Medtr1g032040.1 | plant organelle RNA recognition domain protein... 140 2e-33
Medtr1g072550.1 | plant organelle RNA recognition domain protein... 137 2e-32
Medtr1g072550.2 | plant organelle RNA recognition domain protein... 137 2e-32
Medtr7g107280.1 | plant organelle RNA recognition domain protein... 124 1e-28
Medtr4g053720.1 | plant organelle RNA recognition domain protein... 121 1e-27
Medtr6g043850.1 | plant organelle RNA recognition domain protein... 120 2e-27
Medtr3g105530.1 | plant organelle RNA recognition domain protein... 118 1e-26
Medtr7g117270.1 | plant organelle RNA recognition domain protein... 117 2e-26
Medtr8g089370.2 | plant organelle RNA recognition domain protein... 109 6e-24
Medtr8g089370.1 | plant organelle RNA recognition domain protein... 109 6e-24
Medtr7g018630.1 | plant organelle RNA recognition domain protein... 106 4e-23
Medtr3g029990.2 | ubiquitin carboxyl-terminal hydrolase family p... 104 1e-22
Medtr3g029990.1 | ubiquitin carboxyl-terminal hydrolase family p... 104 2e-22
Medtr1g019170.4 | plant organelle RNA recognition domain protein... 103 3e-22
Medtr1g019170.3 | plant organelle RNA recognition domain protein... 103 3e-22
Medtr1g019170.1 | plant organelle RNA recognition domain protein... 103 3e-22
Medtr1g019170.2 | plant organelle RNA recognition domain protein... 103 3e-22
Medtr1g098960.1 | plant organelle RNA recognition domain protein... 100 5e-21
Medtr3g083350.1 | plant organelle RNA recognition domain protein... 95 2e-19
Medtr3g030020.1 | plant organelle RNA recognition domain protein... 92 1e-18
Medtr0153s0070.2 | plant organelle RNA recognition domain protei... 87 2e-17
Medtr0153s0070.1 | plant organelle RNA recognition domain protei... 82 8e-16
Medtr3g074730.1 | plant organelle RNA recognition domain protein... 82 1e-15
Medtr3g448960.1 | plant organelle RNA recognition domain protein... 68 2e-11
Medtr8g102038.1 | plant organelle RNA recognition domain protein... 65 2e-10
>Medtr3g063230.1 | plant organelle RNA recognition domain protein |
HC | chr3:28611519-28613057 | 20130731
Length = 425
Score = 672 bits (1735), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 328/423 (77%), Positives = 361/423 (85%), Gaps = 7/423 (1%)
Query: 1 MSNRVFMKKGLLPALGAHIVNLLSTSK---QHCGVSIVVRSKTTSAQYVAARARDATFEK 57
MS+RVFMKK L +G HIVN L+ K Q + + VRSKTTS QYV +RARD TFEK
Sbjct: 1 MSHRVFMKKRSLTQMGTHIVNFLTQHKHQNQQQPLCVFVRSKTTSIQYVNSRARDPTFEK 60
Query: 58 LMDKYKNLLKVIAVQDLILANPKNPSVSIDFLSRLSQKLHLNRGATAFLRKYPHIFHIYY 117
LMDKYKNLLKVIAV DLILANPKN SVS+DFLS LSQ+LHLNRGATAFLRK+PHIF+IYY
Sbjct: 61 LMDKYKNLLKVIAVHDLILANPKNRSVSVDFLSNLSQRLHLNRGATAFLRKFPHIFNIYY 120
Query: 118 EPSKLQPYCRLTDAALDVSRKEAEAINASMPVVVDRLVRILSMSASKMVPLRAIFKVWRE 177
EPSKLQP+CRLTDAALDVSR+EAEAIN S+P+VV+RLVRILSMSASK VPLRA+FKVWRE
Sbjct: 121 EPSKLQPFCRLTDAALDVSRQEAEAINTSLPLVVERLVRILSMSASKTVPLRAVFKVWRE 180
Query: 178 LGLPDDFEDSVISANSSVFQLCDGHELNTHLLKLVGDLPSDGFRATVEDWRLVECCKEDS 237
LGLPDDFE+SVI+ANSSVFQLCD E NTHLLKLVGD+PS GFRA VEDWR+VECCK++S
Sbjct: 181 LGLPDDFEESVIAANSSVFQLCDADEQNTHLLKLVGDVPSSGFRAAVEDWRVVECCKDES 240
Query: 238 SVDRMEMRFSFKHGYPPGMRLTKTFRANVKEWQSLPYVGPYEVVSEKKK-SKAGMMAMEK 296
SV+ MEMR+SFK YPPGMRL+K FRANVKEWQSLPY+GPYE+VSEKKK SKAGMMAMEK
Sbjct: 241 SVNSMEMRYSFKQRYPPGMRLSKNFRANVKEWQSLPYMGPYEMVSEKKKTSKAGMMAMEK 300
Query: 297 RAVAIVHEFLSLTVEKMVEVEKISQFRNWFGIDLNIRDLFLDHPGIFYLSTKGKRHTVFL 356
RAV+IVHEF+SLTVEKMVEVEKISQFR WFGID NIRDLFLDHPGIFYLSTKGKRHTVFL
Sbjct: 301 RAVSIVHEFMSLTVEKMVEVEKISQFRKWFGIDFNIRDLFLDHPGIFYLSTKGKRHTVFL 360
Query: 357 REAYERGCLIQPNPVYDAXXXXXXXXXXXXXXXPALNSNLQDRSSNNE---EDNQQTHDS 413
REAYERGCLI PNPVYDA PA+NS L D+S NE +N Q H+S
Sbjct: 361 REAYERGCLIHPNPVYDARRRLLDLVALERRGLPAVNSKLHDKSCGNEVEQGENMQKHES 420
Query: 414 LSS 416
LSS
Sbjct: 421 LSS 423
>Medtr3g063230.2 | plant organelle RNA recognition domain protein |
HC | chr3:28611460-28613057 | 20130731
Length = 401
Score = 612 bits (1578), Expect = e-175, Method: Compositional matrix adjust.
Identities = 306/423 (72%), Positives = 337/423 (79%), Gaps = 31/423 (7%)
Query: 1 MSNRVFMKKGLLPALGAHIVNLLSTSK---QHCGVSIVVRSKTTSAQYVAARARDATFEK 57
MS+RVFMKK L +G HIVN L+ K Q + + VRSKTTS QYV +RARD TFEK
Sbjct: 1 MSHRVFMKKRSLTQMGTHIVNFLTQHKHQNQQQPLCVFVRSKTTSIQYVNSRARDPTFEK 60
Query: 58 LMDKYKNLLKVIAVQDLILANPKNPSVSIDFLSRLSQKLHLNRGATAFLRKYPHIFHIYY 117
LMDKYKNLLKVIAV DLILANPKN SVS+DFLS LSQ+LHLNRGATAFLRK+PHIF+IYY
Sbjct: 61 LMDKYKNLLKVIAVHDLILANPKNRSVSVDFLSNLSQRLHLNRGATAFLRKFPHIFNIYY 120
Query: 118 EPSKLQPYCRLTDAALDVSRKEAEAINASMPVVVDRLVRILSMSASKMVPLRAIFKVWRE 177
EPSKLQP+CRLTDAALDVSR+EAEAIN S+P+VV+RLVRILSMSASK VPLRA+FK
Sbjct: 121 EPSKLQPFCRLTDAALDVSRQEAEAINTSLPLVVERLVRILSMSASKTVPLRAVFK---- 176
Query: 178 LGLPDDFEDSVISANSSVFQLCDGHELNTHLLKLVGDLPSDGFRATVEDWRLVECCKEDS 237
LCD E NTHLLKLVGD+PS GFRA VEDWR+VECCK++S
Sbjct: 177 --------------------LCDADEQNTHLLKLVGDVPSSGFRAAVEDWRVVECCKDES 216
Query: 238 SVDRMEMRFSFKHGYPPGMRLTKTFRANVKEWQSLPYVGPYEVVSEKKK-SKAGMMAMEK 296
SV+ MEMR+SFK YPPGMRL+K FRANVKEWQSLPY+GPYE+VSEKKK SKAGMMAMEK
Sbjct: 217 SVNSMEMRYSFKQRYPPGMRLSKNFRANVKEWQSLPYMGPYEMVSEKKKTSKAGMMAMEK 276
Query: 297 RAVAIVHEFLSLTVEKMVEVEKISQFRNWFGIDLNIRDLFLDHPGIFYLSTKGKRHTVFL 356
RAV+IVHEF+SLTVEKMVEVEKISQFR WFGID NIRDLFLDHPGIFYLSTKGKRHTVFL
Sbjct: 277 RAVSIVHEFMSLTVEKMVEVEKISQFRKWFGIDFNIRDLFLDHPGIFYLSTKGKRHTVFL 336
Query: 357 REAYERGCLIQPNPVYDAXXXXXXXXXXXXXXXPALNSNLQDRSSNNE---EDNQQTHDS 413
REAYERGCLI PNPVYDA PA+NS L D+S NE +N Q H+S
Sbjct: 337 REAYERGCLIHPNPVYDARRRLLDLVALERRGLPAVNSKLHDKSCGNEVEQGENMQKHES 396
Query: 414 LSS 416
LSS
Sbjct: 397 LSS 399
>Medtr7g088530.1 | plant organelle RNA recognition domain protein |
HC | chr7:34489084-34490337 | 20130731
Length = 417
Score = 227 bits (579), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 130/336 (38%), Positives = 188/336 (55%), Gaps = 12/336 (3%)
Query: 40 TTSAQY-VAARARDATFEKLMDKYKNLLKVIAVQDLILANPKNPSVSIDFLSRLSQKLHL 98
T SAQ + R RD F+KL +K L V+ ++LI + VS+ +SR L
Sbjct: 36 TISAQTRLEDRIRDTHFDKLTTHFKKLSLVLKTRNLISNRKRGSFVSLQLMSRWKNITGL 95
Query: 99 NRGATAFLRKYPHIFHIYYEPSKLQPYCRLTDAALDVSRKEAEAINASMPVVVDRLVRIL 158
N T+FL+KYPH+F+++ P + CR+T ++ E + VV R+ ++L
Sbjct: 96 NVTVTSFLQKYPHVFYLFVHPFRRNMCCRMTKKMKELILLEEVVVRQHEVEVVKRVKKLL 155
Query: 159 SMSASKMVPLRAIFKVWRELGLPDDFEDSVISANSSVFQLCDGHELNTHLLKLVGDLPSD 218
MS + + L A+ + RELGLP DF +S++ S F+L D L++V + D
Sbjct: 156 MMSVNGTLHLHALRLIRRELGLPCDFRESILGRYSDEFRLVD--------LEIVALVGWD 207
Query: 219 GFRATVEDWRLVECCKEDSSVDRMEMRFSFKHGYPPGMRLTKTFRANVKEWQSLPYVGPY 278
E + + E +F+F +P G ++ + FR +K WQ L Y PY
Sbjct: 208 DELGMARVEEWREREYREKWLSEFETKFAFPINFPTGFKIERGFREKLKGWQRLSYTKPY 267
Query: 279 EVVSEKKKSKAGMMAMEKRAVAIVHEFLSLTVEKMVEVEKISQFRNWFGIDLNIRDLFLD 338
E K G+ EKRAVA++HE LSLTVEKMVEV++++ FR F I++N+R+L L
Sbjct: 268 E---RKNVKCGGVQRYEKRAVAVLHELLSLTVEKMVEVDQLAHFRRDFDIEVNVRELLLR 324
Query: 339 HPGIFYLSTKGKRHTVFLREAYERGCLIQPNPVYDA 374
HPGIFY+STKG TVFLREAYE+G LI+PNPVY+
Sbjct: 325 HPGIFYISTKGNAQTVFLREAYEKGGLIEPNPVYEV 360
>Medtr6g033595.1 | plant organelle RNA recognition domain protein |
HC | chr6:10945964-10948263 | 20130731
Length = 466
Score = 203 bits (516), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 129/347 (37%), Positives = 189/347 (54%), Gaps = 9/347 (2%)
Query: 33 SIVVRSKTTSAQYVAARARDATFEKLMDKYKNLLKVIAVQDLILANPKNPSVSIDFLSRL 92
SI S++TS R RD ++ M+ K KV+ Q+LIL+ P N S+ I L
Sbjct: 32 SIREFSQSTSIPKKQQRIRDHGYDNYMEIEKKTRKVLKFQNLILSEP-NQSIPISRLETQ 90
Query: 93 SQKLHLNR-GATAFLRKYPHIFHIYYEPSKLQPYCRLTDAALDVSRKEAEAINASMPVVV 151
+ ++ R A AF+ K+ H+F I+ P + +CRLT A+ +E A+ + V
Sbjct: 91 AHRIGFTRHEAIAFILKFLHVFEIFEHPVQRILFCRLTRKAILQIEQERLALADQVERAV 150
Query: 152 DRLVRILSMSASKMVPLRAIFKVWRELGLPDDFEDSVISANSSVFQLCDGHELNTHLLKL 211
RL +++ MS + L + LGLPDDFE SV+ F+L D E ++L
Sbjct: 151 TRLRKMIMMSNGLRLRLEHVRIARSALGLPDDFEYSVVLRYPEFFRLVDAKETRNKYIEL 210
Query: 212 VGDLPSDGFRATVEDWRLVECCKEDSSVDRMEMRFSFKHGYPPGMRLTKTFRANVKEWQS 271
V P + +ED R E + + ++RFSF +PPG +++K FR + +WQ
Sbjct: 211 VEFDPKLA-KCAIEDAR--ERVYRERGSEAEDIRFSFLIDFPPGFKISKYFRIAMWKWQR 267
Query: 272 LPYVGPYE-VVSEKKKSKAGMMAMEKRAVAIVHEFLSLTVEKMVEVEKISQFRNWFGIDL 330
LPY PYE V+ +S MEKRAVA +HE LSLTVEK + +E+I+ FR +
Sbjct: 268 LPYWSPYEDVLGYDLRSIEAQKRMEKRAVATIHELLSLTVEKKITLERIAHFRMAMNLPK 327
Query: 331 NIRDLFLDHPGIFYLSTK---GKRHTVFLREAYERGCLIQPNPVYDA 374
+++ L H GIFY+ST+ GK HTVFLREAY +G L++PN +Y A
Sbjct: 328 KLKEFLLQHQGIFYVSTRGNHGKLHTVFLREAYSKGELVEPNDLYLA 374
>Medtr2g067960.1 | plant organelle RNA recognition domain protein |
HC | chr2:28431693-28434356 | 20130731
Length = 431
Score = 166 bits (420), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 110/309 (35%), Positives = 166/309 (53%), Gaps = 9/309 (2%)
Query: 71 VQDLILANPKNPSVSIDFLSRLSQKLHLNR-GATAFLRKYPHIFHIYYEPSKLQPYCRLT 129
+ +LIL+ N S+ I L L+ ++ R A+AF+ K+P++F I+ + +CRLT
Sbjct: 35 ISELILSEL-NQSIPIPRLETLAHRIGFTRHEASAFILKFPYVFEIFEHLVQRILFCRLT 93
Query: 130 DAALDVSRKEAEAINASMPVVVDRLVRILSMSASKMVPLRAIFKVWRELGLPDDFEDSVI 189
+ +E A+ + V L +++ MS + L + LGL DDFE V+
Sbjct: 94 RKTILQIEQERLALADQVGRTVTCLRKMIMMSNGLRLRLEHVRIARSALGLRDDFEYLVV 153
Query: 190 SANSSVFQLCDGHELNTHLLKLVGDLPSDGFRATVEDWRLVECCKEDSSVDRMEMRFSFK 249
F+L D E ++LV P +ED R E + + ++RFSF
Sbjct: 154 LRYPEFFRLVDAKETRNKYIELVEFDPKLA-TCAIEDAR--ERVYRERGSEAEDIRFSFL 210
Query: 250 HGYPPGMRLTKTFRANVKEWQSLPYVGPYE-VVSEKKKSKAGMMAMEKRAVAIVHEFLSL 308
+ PG +++K FR + +WQSLPY PYE V +S MEKRAVA +HE LSL
Sbjct: 211 IDFLPGFKISKYFRIAMWKWQSLPYWSPYEDVWGYDLRSPEAQKRMEKRAVATIHELLSL 270
Query: 309 TVEKMVEVEKISQFRNWFGIDLNIRDLFLDHPGIFYLSTK---GKRHTVFLREAYERGCL 365
TVEK + +E+I+ F+ + +++ L H GIFY+ST+ GK HTVFLREAY +G L
Sbjct: 271 TVEKKITLERIAHFQMAMNLPKKLKEFLLQHQGIFYVSTRGNHGKLHTVFLREAYRKGEL 330
Query: 366 IQPNPVYDA 374
++PN +Y A
Sbjct: 331 VEPNDLYLA 339
>Medtr1g032380.1 | plant organelle RNA recognition domain protein |
HC | chr1:11495605-11496780 | 20130731
Length = 391
Score = 140 bits (353), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 102/338 (30%), Positives = 165/338 (48%), Gaps = 15/338 (4%)
Query: 38 SKTTSAQYVAARARDATFEKLMDKYKNLLKVIAVQDLILANPKNPSVSIDFLSRLSQKLH 97
+++ S+ V R +D + ++ +++ K + V +L P + + +L + Q++
Sbjct: 25 TRSISSLKVVWR-KDPSLDQAIEQDKRFKQCFRVVKEVLNEP-GQVIPLRYLEKRRQRMR 82
Query: 98 LNRGATAFLRKYPHIFHIYYE--PSKLQP--YCRLTDAALDVSRKEAEAINASMPVVVDR 153
L FL + P +F +YY+ K +P + R++D L +E + P++V +
Sbjct: 83 LKVKIDTFLNQNPFLFDVYYDRIKPKTKPVKFLRVSDHLLQFLEEEKRIYKENEPLIVSK 142
Query: 154 LVRILSMSASKMVPLRAIFKVWRELGLPDDFEDSVISANSSVFQLCDGHELNTHLLKLVG 213
L ++L MS K+V + V RE G P+DF ++ F+L L+LV
Sbjct: 143 LCKLLMMSKDKVVSADKLLHVKREFGFPNDFLVDLVPRYPEYFRLTGLPGEGKSFLELVN 202
Query: 214 DLPSDGFRATVEDWRLVECCKEDSSVDRMEMRFSFKHGYPPGMRLTKTFRANVKEWQSLP 273
P F +V + R +E+SS + +R SF PPG L K R +++W L
Sbjct: 203 WNPE--FAKSVVEKR----AEEESSATGIRVRPSFNVKLPPGFVLKKEMREWIRDWMELD 256
Query: 274 YVGPYEVVSEKKKSKAGMMAMEKRAVAIVHEFLSLTVEKMVEVEKISQFRNWFGIDLNIR 333
YV PYE VS ++S MEKR+V + HE LSL++ K + V + +F + +
Sbjct: 257 YVSPYEDVSHFEQSSR---EMEKRSVGVFHELLSLSLYKRIPVPILGKFCDEYRFSNAFS 313
Query: 334 DLFLDHPGIFYLSTKGKRHTVFLREAYERGCLIQPNPV 371
F H GIFYLS KG T LREAYE LI +P+
Sbjct: 314 SAFTRHSGIFYLSLKGGIETAMLREAYEGDKLIHIDPL 351
>Medtr1g032040.1 | plant organelle RNA recognition domain protein |
HC | chr1:11336962-11338761 | 20130731
Length = 391
Score = 140 bits (353), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 102/338 (30%), Positives = 165/338 (48%), Gaps = 15/338 (4%)
Query: 38 SKTTSAQYVAARARDATFEKLMDKYKNLLKVIAVQDLILANPKNPSVSIDFLSRLSQKLH 97
+++ S+ V R +D + ++ +++ K + V +L P + + +L + Q++
Sbjct: 25 TRSISSLKVVWR-KDPSLDQAIEQDKRFKQCFRVVKEVLNEP-GQVIPLRYLEKRRQRMR 82
Query: 98 LNRGATAFLRKYPHIFHIYYE--PSKLQP--YCRLTDAALDVSRKEAEAINASMPVVVDR 153
L FL + P +F +YY+ K +P + R++D L +E + P++V +
Sbjct: 83 LKVKIDTFLNQNPFLFDVYYDRIKPKTKPVKFLRVSDHLLQFLEEEKRIYKENEPLIVSK 142
Query: 154 LVRILSMSASKMVPLRAIFKVWRELGLPDDFEDSVISANSSVFQLCDGHELNTHLLKLVG 213
L ++L MS K+V + V RE G P+DF ++ F+L L+LV
Sbjct: 143 LCKLLMMSKDKVVSADKLLHVKREFGFPNDFLVDLVPRYPEYFRLTGLPGEGKSFLELVN 202
Query: 214 DLPSDGFRATVEDWRLVECCKEDSSVDRMEMRFSFKHGYPPGMRLTKTFRANVKEWQSLP 273
P F +V + R +E+SS + +R SF PPG L K R +++W L
Sbjct: 203 WNPE--FAKSVVEKR----AEEESSATGIRVRPSFNVKLPPGFVLKKEMREWIRDWMELD 256
Query: 274 YVGPYEVVSEKKKSKAGMMAMEKRAVAIVHEFLSLTVEKMVEVEKISQFRNWFGIDLNIR 333
YV PYE VS ++S MEKR+V + HE LSL++ K + V + +F + +
Sbjct: 257 YVSPYEDVSHFEQSSR---EMEKRSVGVFHELLSLSLYKRIPVPILGKFCDEYRFSNAFS 313
Query: 334 DLFLDHPGIFYLSTKGKRHTVFLREAYERGCLIQPNPV 371
F H GIFYLS KG T LREAYE LI +P+
Sbjct: 314 SAFTRHSGIFYLSLKGGIETAMLREAYEGDKLIHIDPL 351
>Medtr1g072550.1 | plant organelle RNA recognition domain protein |
HC | chr1:32201119-32198282 | 20130731
Length = 393
Score = 137 bits (345), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 101/345 (29%), Positives = 168/345 (48%), Gaps = 15/345 (4%)
Query: 31 GVSIVVRSKTTSAQYVAARARDATFEKLMDKYKNLLKVIAVQDLILANPKNPSVSIDFLS 90
++I V ++ S+ V R +D + ++ +++ K + V +L P + + +L
Sbjct: 18 NLNIHVHTRLISSLKVVWR-KDQSLDQAIEQDKRFKQCARVVKEVLNEP-GQVIPLRYLE 75
Query: 91 RLSQKLHLNRGATAFLRKYPHIFHIYYE--PSKLQP--YCRLTDAALDVSRKEAEAINAS 146
+ Q++ L FL + P +F +YY+ K +P + R++D L ++E +
Sbjct: 76 KRRQRMRLKVKIDTFLNQNPFLFDVYYDRIKPKTEPVKFLRVSDHLLQFLQEEKRIYKEN 135
Query: 147 MPVVVDRLVRILSMSASKMVPLRAIFKVWRELGLPDDFEDSVISANSSVFQLCDGHELNT 206
P++V +L ++L MS K+V + V RE G P+DF ++ F+L
Sbjct: 136 EPLIVSKLCKLLMMSKDKIVSADKLLHVKREFGFPNDFLVDLVPRYPEYFRLTGLPGEGK 195
Query: 207 HLLKLVGDLPSDGFRATVEDWRLVECCKEDSSVDRMEMRFSFKHGYPPGMRLTKTFRANV 266
L+LV P F +V + R +E+S + +R SF PPG L K R +
Sbjct: 196 SFLELVNWNPE--FAKSVIERR----AEEESRATGIRVRPSFNVKLPPGFVLKKEMREWI 249
Query: 267 KEWQSLPYVGPYEVVSEKKKSKAGMMAMEKRAVAIVHEFLSLTVEKMVEVEKISQFRNWF 326
++W L YV PYE VS +++ MEKR+V + HE LSL++ K V V + +F + +
Sbjct: 250 RDWMELDYVSPYEDVSHLEQASR---EMEKRSVGVFHELLSLSLYKRVPVPILGKFCDEY 306
Query: 327 GIDLNIRDLFLDHPGIFYLSTKGKRHTVFLREAYERGCLIQPNPV 371
F H GIFY+S KG T LREAY+ LI +P+
Sbjct: 307 RFSNAFSSAFTRHSGIFYMSLKGGIETAMLREAYDGDKLIDIDPL 351
>Medtr1g072550.2 | plant organelle RNA recognition domain protein |
HC | chr1:32201119-32199304 | 20130731
Length = 393
Score = 137 bits (345), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 101/345 (29%), Positives = 168/345 (48%), Gaps = 15/345 (4%)
Query: 31 GVSIVVRSKTTSAQYVAARARDATFEKLMDKYKNLLKVIAVQDLILANPKNPSVSIDFLS 90
++I V ++ S+ V R +D + ++ +++ K + V +L P + + +L
Sbjct: 18 NLNIHVHTRLISSLKVVWR-KDQSLDQAIEQDKRFKQCARVVKEVLNEP-GQVIPLRYLE 75
Query: 91 RLSQKLHLNRGATAFLRKYPHIFHIYYE--PSKLQP--YCRLTDAALDVSRKEAEAINAS 146
+ Q++ L FL + P +F +YY+ K +P + R++D L ++E +
Sbjct: 76 KRRQRMRLKVKIDTFLNQNPFLFDVYYDRIKPKTEPVKFLRVSDHLLQFLQEEKRIYKEN 135
Query: 147 MPVVVDRLVRILSMSASKMVPLRAIFKVWRELGLPDDFEDSVISANSSVFQLCDGHELNT 206
P++V +L ++L MS K+V + V RE G P+DF ++ F+L
Sbjct: 136 EPLIVSKLCKLLMMSKDKIVSADKLLHVKREFGFPNDFLVDLVPRYPEYFRLTGLPGEGK 195
Query: 207 HLLKLVGDLPSDGFRATVEDWRLVECCKEDSSVDRMEMRFSFKHGYPPGMRLTKTFRANV 266
L+LV P F +V + R +E+S + +R SF PPG L K R +
Sbjct: 196 SFLELVNWNPE--FAKSVIERR----AEEESRATGIRVRPSFNVKLPPGFVLKKEMREWI 249
Query: 267 KEWQSLPYVGPYEVVSEKKKSKAGMMAMEKRAVAIVHEFLSLTVEKMVEVEKISQFRNWF 326
++W L YV PYE VS +++ MEKR+V + HE LSL++ K V V + +F + +
Sbjct: 250 RDWMELDYVSPYEDVSHLEQASR---EMEKRSVGVFHELLSLSLYKRVPVPILGKFCDEY 306
Query: 327 GIDLNIRDLFLDHPGIFYLSTKGKRHTVFLREAYERGCLIQPNPV 371
F H GIFY+S KG T LREAY+ LI +P+
Sbjct: 307 RFSNAFSSAFTRHSGIFYMSLKGGIETAMLREAYDGDKLIDIDPL 351
>Medtr7g107280.1 | plant organelle RNA recognition domain protein |
HC | chr7:43760664-43762324 | 20130731
Length = 420
Score = 124 bits (312), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 88/273 (32%), Positives = 133/273 (48%), Gaps = 13/273 (4%)
Query: 105 FLRKYPHIFHIYYEPS-KLQPYCRLTDAALDVSRKEAEAINASMPVVVDRLVRILSMSAS 163
F+R+YP +FH + P P RLTD A + +E +V+R ++L M S
Sbjct: 87 FIRRYPTLFHEFPHPRWNSLPCFRLTDTAQLLDSQEQSIYAVHENDIVERFSKVLMMMKS 146
Query: 164 KMVPLRAIFKVWRELGLPDDFEDSVISANSSVFQLCDGHELNTHLLKLVGDLPSDGFRAT 223
+ VP+++++ + +LGLPD FE ++I FQ ++LV D F +
Sbjct: 147 RTVPIQSLYPLKFDLGLPDAFEKTLIPKYPDKFQFVKAGN-GVSAIRLVD--WCDEFAVS 203
Query: 224 VEDWRLVECCKEDSS-----VDRMEMRFSFKHGYPPGMRLTKTFRANVKEWQSLPYVGPY 278
+ +C E++S R + F +P G K R + E+Q LPY+ PY
Sbjct: 204 ALQ-KSNQCESENASDQYRDFKRGKTALVFPMRFPRGYGGQKKVRFWMDEFQKLPYISPY 262
Query: 279 EVVSEKKKSKAGMMAMEKRAVAIVHEFLSLTVEKMVEVEKISQFRNWFGIDLNIRDLFLD 338
S K K+ +M EKR V ++HEFLSL + K + + R + +F
Sbjct: 263 -ADSSKIDPKSDLM--EKRVVGVLHEFLSLCLHKKTKRNYLRSLREELNLPHKFTRIFTR 319
Query: 339 HPGIFYLSTKGKRHTVFLREAYERGCLIQPNPV 371
+PGIFYLS K K TV LRE Y RG L+ P+P+
Sbjct: 320 YPGIFYLSLKCKTTTVTLREGYARGKLVDPHPL 352
>Medtr4g053720.1 | plant organelle RNA recognition domain protein |
HC | chr4:19386178-19384121 | 20130731
Length = 357
Score = 121 bits (304), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 98/343 (28%), Positives = 154/343 (44%), Gaps = 32/343 (9%)
Query: 45 YVAARA---RDATFEKLMDKYKNLLKVIAVQDLILANPKNPSVSIDFLSRLSQKLHLNRG 101
+V AR RD + + K KNL VI++++ I+++P + S+S+ S L L+L
Sbjct: 17 FVNARVKWVRDDYLDTAVLKEKNLKHVISLKNHIVSSP-SKSLSLYNASMLKASLNLPMI 75
Query: 102 ATAFLRKYPHIFHIYYEPSKLQPYCRLTDAALDVSRKEAEAINA--SMPVVVDRLVRILS 159
+ KY H+F + L P +LT AL + ++E E N+ + RL R+L
Sbjct: 76 TIKLVEKYHHVFMQFQPSPGLPPRIKLTAQALALHKEEMEVHNSRTNQEDAAQRLARLLM 135
Query: 160 MSASKMVPLRAIFKVWRELGLPDDFEDSVISANSSVFQLCDGHELNTHLLKLVGDLPSDG 219
++ +P+ I K+ ++GLP D+ ++++ F +C V + P G
Sbjct: 136 LAGMARLPIYVIEKLKWDMGLPHDYVTTLLAYYPDYFDVC------------VVEDPLSG 183
Query: 220 ---FRATVEDWRLVECCKE--------DSSVDRMEMRFSFKHGYPPGMRLTKTFRANVKE 268
+ WR E + D+ F P L K + V+
Sbjct: 184 KEVLALELVSWRKELSVSELEKRVMGFNYDADKRRHDIQFPMFLPKSFALEKRVKTWVEG 243
Query: 269 WQSLPYVGPYEVVSEKKKSKAGMMAMEKRAVAIVHEFLSLTVEKMVEVEKISQFRNWFGI 328
WQ+LPY+ PYE + EK VAI+HE LSL V K E E + + G+
Sbjct: 244 WQTLPYISPYENAFHLDSNSD---QAEKWTVAILHELLSLLVSKKTESENLICYGECLGL 300
Query: 329 DLNIRDLFLDHPGIFYLSTKGKRHTVFLREAYERGCLIQPNPV 371
+ + HPGIFYLS K + T LREAY L++ +PV
Sbjct: 301 GSRFKKALVHHPGIFYLSNKIRTQTAVLREAYRNEFLVKNHPV 343
>Medtr6g043850.1 | plant organelle RNA recognition domain protein |
LC | chr6:15115306-15109090 | 20130731
Length = 664
Score = 120 bits (302), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 95/337 (28%), Positives = 159/337 (47%), Gaps = 40/337 (11%)
Query: 51 RDATFEKLMDKYKNLLKVIAVQDLILANPKNPSVSIDFLSRLSQKLHLNRGATAFLRKYP 110
RD + +++ KNL ++ + LI P S+ I + + S+ L+L F+RKYP
Sbjct: 32 RDRGLDHAVEREKNLKPLLTLLSLINNEP-TKSLPISII-KQSRSLNLPFRPIEFIRKYP 89
Query: 111 HIFHIYYEPS-KLQPYCRLTDAALDVSRKEAEAINASM--PVVVDRLVRILSMSASKMVP 167
+F +Y +P+ +LT A+D++ E + + + V R++++L ++ +P
Sbjct: 90 SVFEEFYNNGCTFEPHVKLTAKAIDLNADEKFLVASDVFKKDVAVRVLKLLMIAKGNKIP 149
Query: 168 LRAIFKVWRELGLPDDFEDSVISANSSVFQLCDGHELNTHLLKLVGDLPSDGFRATVEDW 227
L + + +LGLPDD+ SVI F++ N +L+LV
Sbjct: 150 LSVVDGLKWDLGLPDDYVKSVIPEFPDHFRVVGVD--NNAVLELV--------------- 192
Query: 228 RLVECCKEDSSVDRMEMRFSFKH-------GYP----PGMRLTKTFRANVKEWQSLPYVG 276
C + SV +E ++ K G+P G + K + VKEW L YV
Sbjct: 193 ----CWSKKHSVSFLEKKYGDKAKGQGKELGFPVQFSTGFEMDKKYEKWVKEWNGLRYVS 248
Query: 277 PYEVVSEKKKSKAGMMAMEKRAVAIVHEFLSLTVEKMVEVEKISQFRNWFGIDLNIRDLF 336
PYE S +K V ++HE L+L V K E + + W G+ + +
Sbjct: 249 PYENGVNLSGSSE---ESDKWVVGVLHEILNLLVSKKTEKDNVLMIGEWLGLASRFKRVI 305
Query: 337 LDHPGIFYLSTKGKRHTVFLREAYERGCLIQPNPVYD 373
L HPGIFY+S+K + +TV LR+ Y+RG L++ NP +
Sbjct: 306 LQHPGIFYVSSKNRMYTVVLRDGYKRGLLVEDNPAME 342
>Medtr3g105530.1 | plant organelle RNA recognition domain protein |
HC | chr3:48661486-48663294 | 20130731
Length = 431
Score = 118 bits (295), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 99/364 (27%), Positives = 172/364 (47%), Gaps = 28/364 (7%)
Query: 23 LSTSKQHCGVSIVVRSKTTS--AQYVAARARDATFEKLMDKYKNLLKVIAVQDLILANPK 80
+++ +++C S R TTS Q + + R E +K+K K++ + +L+ P+
Sbjct: 8 INSWRKNCCYSHFERWMTTSKRVQDRSKKKRVHELEAATEKWKITSKIVFLIELLEQEPE 67
Query: 81 NPSVSIDFLSRLSQKLHLNRG--ATAFLRKYPHIFHIYYEPSKLQPYCRLTDAALDVSRK 138
+ + LS +++ L + + FLRK P +F +Y + + + +C LT A + +
Sbjct: 68 -IVIPVRSLSHYRKQISLPKPHRISDFLRKTPKLFELYKDRNGVL-WCGLTQKAEVLMEE 125
Query: 139 EAEAINASMPVVVDRLVRILSMSASKMVPLRAIFKVWRELGLPDDFEDSVISANSSVFQL 198
I + + + R+L MS K V L I R+ GLP DF + +F++
Sbjct: 126 HKRVIEENEDKAAEYVTRLLMMSVDKRVQLDKIAHFRRDFGLPMDFRTHWVHKYPQLFRV 185
Query: 199 CDGHELNTHLLKLVGDLPSDGFRATVEDWRLVECCKED----SSVDRME-----MRFSFK 249
+ L+LV + +W + E K++ V E + F
Sbjct: 186 VKPSLDDVEFLELV---------SWNSEWAITEIEKKNKMILEGVTETEHTPGLLSLPFP 236
Query: 250 HGYPPGM-RLTKTFRANVKEWQSLPYVGPYEVVSEKKKSKAGMMAMEKRAVAIVHEFLSL 308
+P R+ + +K +Q Y+ PY ++ K K G + +KRAVA++HE LS
Sbjct: 237 LKFPANFKRVHSYYGEKIKMFQERTYLSPY---ADAKGLKPGSLEFDKRAVAVMHELLSF 293
Query: 309 TVEKMVEVEKISQFRNWFGIDLNIRDLFLDHPGIFYLSTKGKRHTVFLREAYERGCLIQP 368
TVEK + + ++ FR + + L L H GIFY+S +GKR +VFL EAYE LI+
Sbjct: 294 TVEKRLVTDHLTHFRWELVMPQKLMRLLLKHCGIFYVSERGKRFSVFLTEAYEGSELIEK 353
Query: 369 NPVY 372
+P++
Sbjct: 354 SPLF 357
>Medtr7g117270.1 | plant organelle RNA recognition domain protein |
HC | chr7:48441549-48444050 | 20130731
Length = 530
Score = 117 bits (294), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 99/367 (26%), Positives = 174/367 (47%), Gaps = 37/367 (10%)
Query: 15 LGAHIVNLLSTSKQHCGVSIVVRSKTTSAQYVAARARDATFEKLMDKYKNLLKVIAVQDL 74
LG ++ L ++ H G + + SA R ++ F+ ++ K K L V+ V+ +
Sbjct: 55 LGTNL-RLFQSNSSHVGGTRFNKIMPISA--AVKRRKELPFDNVIQKDKKLKFVLKVRKI 111
Query: 75 ILANPKNPSVSIDFLSRLSQKLHLN--RGATAFLRKYPHIFHIYYEPSKLQPYCRLTDAA 132
+++ P +S+ L + ++L L+ R LR++P +F I E ++T A
Sbjct: 112 LVSKPTR-VMSLQELGKYRRELGLDKKRKLIVILRRFPGVFEIV-EDGCYSLKFKMTSEA 169
Query: 133 LDVSRKEAEAINASMPVVVDRLVRILSMSASKMVPLRAIFKVWRELGLPDDFEDSVISAN 192
+ +E N VVV +L ++L M K + L I + +LGLP +F D++
Sbjct: 170 EKLYLEELRVRNEMEDVVVTKLRKLLMMPLEKRILLEKIGHLANDLGLPREFRDTICHRY 229
Query: 193 SSVFQLCDGH-----EL---NTHLLKLVGDLPSDGFRATVEDWRLVECCKEDSSVDRMEM 244
F++ EL + HL +L + E+ R+ E +++ +DR
Sbjct: 230 PEFFKVVQTERGPALELTHWDPHLAVSAAEL-------SAEENRIREVEEQNLIIDRAP- 281
Query: 245 RFSFKHGYPPGMRLTKTFRANVKEWQSLPYVGPYEVVSEKKKSKAGMMAM-----EKRAV 299
+F+ + P G+ L+K + +++ +PY+ PY S M+ + EK A
Sbjct: 282 KFN-RVKLPKGLSLSKGEMRKIMQFRDIPYISPY--------SDFSMIGLNTPEKEKHAC 332
Query: 300 AIVHEFLSLTVEKMVEVEKISQFRNWFGIDLNIRDLFLDHPGIFYLSTKGKRHTVFLREA 359
++HE LSLT+EK V+ + FR F +R + + HP +FY+S KG R +VFLREA
Sbjct: 333 GVIHEILSLTLEKRTLVDNFTHFREEFRFSQQLRGMLIRHPDMFYISLKGDRDSVFLREA 392
Query: 360 YERGCLI 366
Y L+
Sbjct: 393 YRDSQLV 399
>Medtr8g089370.2 | plant organelle RNA recognition domain protein |
HC | chr8:37138838-37141109 | 20130731
Length = 389
Score = 109 bits (272), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 80/273 (29%), Positives = 127/273 (46%), Gaps = 14/273 (5%)
Query: 103 TAFLRKYPHIFHIYYE---PSKLQPYCRLTDAALDVSRKEAEAINASMPVVVDRLVRILS 159
F+R+YP++F Y P L+ A+ + R+E + + + DRL ++L
Sbjct: 92 AVFIRRYPNVFVESYSLDSGGSPVPCFGLSSEAMKIHREEVDILRENSLEFRDRLCKLLM 151
Query: 160 MSASKMVPLRAIFKVWRELGLPDDFEDSVISANSSVFQLCDGHELNTHLLKLVGDLPSDG 219
++ M+PL+ I ++ +LGLP D++DS + + F ++ L L D D
Sbjct: 152 LTRDWMLPLQTIDQLKWDLGLPYDYQDSFVMNHPEKFSFVRLPDVRVGLKLLFWD---DK 208
Query: 220 FRAT-VEDWRLVECCKEDSSVDRMEMRFSFKHGYPPGMRLTKTFRANVKEWQSLPYVGPY 278
+ +E ++ ED + SF G+ GM+ + ++EWQ LPY PY
Sbjct: 209 LAVSELEKNASLQQQVEDIKNGTLAFPVSFTRGF--GMK--RKSMEWLREWQKLPYTSPY 264
Query: 279 EVVSEKKKSKAGMMAMEKRAVAIVHEFLSLTVEKMVEVEKISQFRNWFGIDLNIRDLFLD 338
++ EKR V + HE L LT+ K E + +S R + F
Sbjct: 265 ---ADASHLDIRTDVSEKRVVGVFHELLHLTLHKQTERKNVSNLRRPLALPQKFTKAFER 321
Query: 339 HPGIFYLSTKGKRHTVFLREAYERGCLIQPNPV 371
HPGIFY+S K TV LREAY G L+Q +P+
Sbjct: 322 HPGIFYISKKNDTQTVVLREAYNGGELVQKHPL 354
>Medtr8g089370.1 | plant organelle RNA recognition domain protein |
HC | chr8:37138838-37141109 | 20130731
Length = 389
Score = 109 bits (272), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 80/273 (29%), Positives = 127/273 (46%), Gaps = 14/273 (5%)
Query: 103 TAFLRKYPHIFHIYYE---PSKLQPYCRLTDAALDVSRKEAEAINASMPVVVDRLVRILS 159
F+R+YP++F Y P L+ A+ + R+E + + + DRL ++L
Sbjct: 92 AVFIRRYPNVFVESYSLDSGGSPVPCFGLSSEAMKIHREEVDILRENSLEFRDRLCKLLM 151
Query: 160 MSASKMVPLRAIFKVWRELGLPDDFEDSVISANSSVFQLCDGHELNTHLLKLVGDLPSDG 219
++ M+PL+ I ++ +LGLP D++DS + + F ++ L L D D
Sbjct: 152 LTRDWMLPLQTIDQLKWDLGLPYDYQDSFVMNHPEKFSFVRLPDVRVGLKLLFWD---DK 208
Query: 220 FRAT-VEDWRLVECCKEDSSVDRMEMRFSFKHGYPPGMRLTKTFRANVKEWQSLPYVGPY 278
+ +E ++ ED + SF G+ GM+ + ++EWQ LPY PY
Sbjct: 209 LAVSELEKNASLQQQVEDIKNGTLAFPVSFTRGF--GMK--RKSMEWLREWQKLPYTSPY 264
Query: 279 EVVSEKKKSKAGMMAMEKRAVAIVHEFLSLTVEKMVEVEKISQFRNWFGIDLNIRDLFLD 338
++ EKR V + HE L LT+ K E + +S R + F
Sbjct: 265 ---ADASHLDIRTDVSEKRVVGVFHELLHLTLHKQTERKNVSNLRRPLALPQKFTKAFER 321
Query: 339 HPGIFYLSTKGKRHTVFLREAYERGCLIQPNPV 371
HPGIFY+S K TV LREAY G L+Q +P+
Sbjct: 322 HPGIFYISKKNDTQTVVLREAYNGGELVQKHPL 354
>Medtr7g018630.1 | plant organelle RNA recognition domain protein |
HC | chr7:6083157-6084419 | 20130731
Length = 420
Score = 106 bits (265), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 83/308 (26%), Positives = 143/308 (46%), Gaps = 19/308 (6%)
Query: 68 VIAVQDLILANPKNPSVSIDFLSRLSQKLHLNRGATAFLRKYPHIFHIYYEPSKLQPYCR 127
VIA+++ I +P N + I +S+ +L + FLR+YP IF + P P+ R
Sbjct: 72 VIALKNCIAQDP-NGCIPISSVSKRGLQLDVPMKVARFLRQYPSIFEEFTGPKYNHPWFR 130
Query: 128 LTDAALDVSRKEAEAINASMPVVVDRLVRILSMSASKMVPLRAIFKVWRELGLPDDF--- 184
LT A ++ R E S + RL +++ M+ ++PL+ I + LGLP DF
Sbjct: 131 LTPEAAEIDRDEKRVYEESREELRSRLKKMILMTKENVLPLKIIQGMQWYLGLPHDFLQH 190
Query: 185 EDSVISANSSVFQLCDGHELNTHLLKLVGDLPSDGFRATVEDWRLVECCKEDSSVDRMEM 244
+ + + ++ DG LK + + + +E+ + + D S +
Sbjct: 191 HEQNLDDSFRFVEMEDG-------LKGLAIESRERVYSVMEENAMKKGMYYDGSQTEA-I 242
Query: 245 RFSFKHGYPP-GMRLTKTFRANVKEWQSLPYVGPYEVVSEKKKSKAGMMAMEKRAVAIVH 303
F F +P +R+ + E+Q LPY+ PY+ S + EKR + ++H
Sbjct: 243 EFPF---FPSKALRMKTKIENWLHEFQKLPYISPYDDFSNLDPNSD---IAEKRLIGVLH 296
Query: 304 EFLSLTVEKMVEVEKISQFRNWFGIDLNIRDLFLDHPGIFYLSTKGKRHTVFLREAYERG 363
E LSL ++ E K+ + +FG + F HP +FY+S + K TV L+EAY
Sbjct: 297 ELLSLFIDHSAERRKLLCLKKYFGFPQKVHRAFERHPHMFYMSMRNKTCTVILKEAYCNE 356
Query: 364 CLIQPNPV 371
I+ +P+
Sbjct: 357 LAIENHPL 364
>Medtr3g029990.2 | ubiquitin carboxyl-terminal hydrolase family
protein | HC | chr3:9456270-9464177 | 20130731
Length = 626
Score = 104 bits (260), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 85/352 (24%), Positives = 157/352 (44%), Gaps = 38/352 (10%)
Query: 27 KQHCGVSIVVRSKTTSAQYVAARARDATFEKLMDKYKNLLKVIAVQDLILANPKNPSVSI 86
+ + I++R+ + + + +D E + + K + ++++IL P N + I
Sbjct: 3 RHQTNIIILLRTSSKRHYCLWSSKKDPDLESALSRNKRWIINNQIKNIILRYPNN-QIPI 61
Query: 87 DFLSRLSQKLHLNRGATAFLRKYPHIFHIYYEPSKLQPYCRLTDAALDVSRKEAEAINAS 146
L + + L L A ++ KYP F + Q + LT +++ +E ++
Sbjct: 62 QTLQKKFKTLDLQGKALNWISKYPSCFQFH------QDHVLLTKRMMELVHEEQSLKDSL 115
Query: 147 MPVVVDRLVRILSMSASKMVPLRAIFKVWRELGLPDDFEDSVISANSSVFQLCDGHELNT 206
V V RL ++L +S + + + I ++ LG PDD+ +++ +F++ + +
Sbjct: 116 ESVFVPRLAKLLMLSLNNCLNVMKINEIKNSLGFPDDYLIGIVAKYPDLFRIRNESGRRS 175
Query: 207 HLLKLVGDLPSDGFRATVEDWRL-------VECCKEDSSVDRMEMRFSFKHGYPPGMRLT 259
++ + D + VE + CC S V +E
Sbjct: 176 SMVVELMKWNPDFAVSEVEALAMKNGVEVNFSCCLPSSWVKSLE---------------- 219
Query: 260 KTFRANVKEWQSLPYVGPYEVVSEKKKSKAGMMAMEKRAVAIVHEFLSLTVEKMVEVEKI 319
+E++ +PYV PY S+ + G MEKR V +VHE LSLT+ K + + K+
Sbjct: 220 -----KFREFELVPYVSPY---SDPRGLVEGSKEMEKRNVGLVHELLSLTLWKKISIMKL 271
Query: 320 SQFRNWFGIDLNIRDLFLDHPGIFYLSTKGKRHTVFLREAYERGCLIQPNPV 371
F+ F + + L L HPGIFY+S K + +TV LRE Y L+ +P+
Sbjct: 272 GHFKREFFLPDKVNVLLLKHPGIFYVSNKYRIYTVLLREGYVGSQLVDKDPL 323
>Medtr3g029990.1 | ubiquitin carboxyl-terminal hydrolase family
protein | HC | chr3:9456270-9462535 | 20130731
Length = 630
Score = 104 bits (259), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 85/352 (24%), Positives = 157/352 (44%), Gaps = 38/352 (10%)
Query: 27 KQHCGVSIVVRSKTTSAQYVAARARDATFEKLMDKYKNLLKVIAVQDLILANPKNPSVSI 86
+ + I++R+ + + + +D E + + K + ++++IL P N + I
Sbjct: 3 RHQTNIIILLRTSSKRHYCLWSSKKDPDLESALSRNKRWIINNQIKNIILRYPNN-QIPI 61
Query: 87 DFLSRLSQKLHLNRGATAFLRKYPHIFHIYYEPSKLQPYCRLTDAALDVSRKEAEAINAS 146
L + + L L A ++ KYP F + Q + LT +++ +E ++
Sbjct: 62 QTLQKKFKTLDLQGKALNWISKYPSCFQFH------QDHVLLTKRMMELVHEEQSLKDSL 115
Query: 147 MPVVVDRLVRILSMSASKMVPLRAIFKVWRELGLPDDFEDSVISANSSVFQLCDGHELNT 206
V V RL ++L +S + + + I ++ LG PDD+ +++ +F++ + +
Sbjct: 116 ESVFVPRLAKLLMLSLNNCLNVMKINEIKNSLGFPDDYLIGIVAKYPDLFRIRNESGRRS 175
Query: 207 HLLKLVGDLPSDGFRATVEDWRL-------VECCKEDSSVDRMEMRFSFKHGYPPGMRLT 259
++ + D + VE + CC S V +E
Sbjct: 176 SMVVELMKWNPDFAVSEVEALAMKNGVEVNFSCCLPSSWVKSLE---------------- 219
Query: 260 KTFRANVKEWQSLPYVGPYEVVSEKKKSKAGMMAMEKRAVAIVHEFLSLTVEKMVEVEKI 319
+E++ +PYV PY S+ + G MEKR V +VHE LSLT+ K + + K+
Sbjct: 220 -----KFREFELVPYVSPY---SDPRGLVEGSKEMEKRNVGLVHELLSLTLWKKISIMKL 271
Query: 320 SQFRNWFGIDLNIRDLFLDHPGIFYLSTKGKRHTVFLREAYERGCLIQPNPV 371
F+ F + + L L HPGIFY+S K + +TV LRE Y L+ +P+
Sbjct: 272 GHFKREFFLPDKVNVLLLKHPGIFYVSNKYRIYTVLLREGYVGSQLVDKDPL 323
>Medtr1g019170.4 | plant organelle RNA recognition domain protein |
HC | chr1:5720388-5724512 | 20130731
Length = 416
Score = 103 bits (257), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 87/352 (24%), Positives = 159/352 (45%), Gaps = 40/352 (11%)
Query: 29 HCGVSIVVRSKTTSAQY--VAARARDATFEKLMDKYKNLLKVIAVQDLILANPKNPSVSI 86
H +I++ +T+S ++ + + +D E + + K + ++++IL P N + I
Sbjct: 3 HHQTNIIILLRTSSKRHYCLWSSKKDPDLESALSRNKRWIINNQIKNIILRYPNN-QIPI 61
Query: 87 DFLSRLSQKLHLNRGATAFLRKYPHIFHIYYEPSKLQPYCRLTDAALDVSRKEAEAINAS 146
L + + L L A ++ KYP F + Q + LT +++ +E ++
Sbjct: 62 QTLQKKFKTLDLQGKALNWISKYPSCFQFH------QDHVLLTKRMMELVHEEQSLKDSL 115
Query: 147 MPVVVDRLVRILSMSASKMVPLRAIFKVWRELGLPDDFEDSVISANSSVFQLCDGHELNT 206
V V RL ++L +S + + + I ++ LG PDD+ +++ +F++ + +
Sbjct: 116 ESVFVPRLAKLLMLSLNNCLNVMKINEIKNSLGFPDDYLIGIVAKYPDLFRIRNESGRRS 175
Query: 207 HLLKLVGDLPSDGFRATVEDWRL-------VECCKEDSSVDRMEMRFSFKHGYPPGMRLT 259
++ + D + VE + CC S V +E
Sbjct: 176 SMVVELMKWNPDFAVSEVEALAMKNGVEVNFSCCLPSSWVKSLE---------------- 219
Query: 260 KTFRANVKEWQSLPYVGPYEVVSEKKKSKAGMMAMEKRAVAIVHEFLSLTVEKMVEVEKI 319
E++ +PYV PY S+ + G MEKR V +VHE LSLT+ K + + K+
Sbjct: 220 -----KFHEFELVPYVSPY---SDPRGLVEGSKEMEKRNVGLVHELLSLTLWKKISIMKL 271
Query: 320 SQFRNWFGIDLNIRDLFLDHPGIFYLSTKGKRHTVFLREAYERGCLIQPNPV 371
F+ F + + L L HPGIFY+S K + +TV LRE Y L+ +P+
Sbjct: 272 GHFKREFFLPDKVNVLLLKHPGIFYVSNKYRIYTVLLREGYVGSQLVDKDPL 323
>Medtr1g019170.3 | plant organelle RNA recognition domain protein |
HC | chr1:5720163-5724512 | 20130731
Length = 416
Score = 103 bits (257), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 87/352 (24%), Positives = 159/352 (45%), Gaps = 40/352 (11%)
Query: 29 HCGVSIVVRSKTTSAQY--VAARARDATFEKLMDKYKNLLKVIAVQDLILANPKNPSVSI 86
H +I++ +T+S ++ + + +D E + + K + ++++IL P N + I
Sbjct: 3 HHQTNIIILLRTSSKRHYCLWSSKKDPDLESALSRNKRWIINNQIKNIILRYPNN-QIPI 61
Query: 87 DFLSRLSQKLHLNRGATAFLRKYPHIFHIYYEPSKLQPYCRLTDAALDVSRKEAEAINAS 146
L + + L L A ++ KYP F + Q + LT +++ +E ++
Sbjct: 62 QTLQKKFKTLDLQGKALNWISKYPSCFQFH------QDHVLLTKRMMELVHEEQSLKDSL 115
Query: 147 MPVVVDRLVRILSMSASKMVPLRAIFKVWRELGLPDDFEDSVISANSSVFQLCDGHELNT 206
V V RL ++L +S + + + I ++ LG PDD+ +++ +F++ + +
Sbjct: 116 ESVFVPRLAKLLMLSLNNCLNVMKINEIKNSLGFPDDYLIGIVAKYPDLFRIRNESGRRS 175
Query: 207 HLLKLVGDLPSDGFRATVEDWRL-------VECCKEDSSVDRMEMRFSFKHGYPPGMRLT 259
++ + D + VE + CC S V +E
Sbjct: 176 SMVVELMKWNPDFAVSEVEALAMKNGVEVNFSCCLPSSWVKSLE---------------- 219
Query: 260 KTFRANVKEWQSLPYVGPYEVVSEKKKSKAGMMAMEKRAVAIVHEFLSLTVEKMVEVEKI 319
E++ +PYV PY S+ + G MEKR V +VHE LSLT+ K + + K+
Sbjct: 220 -----KFHEFELVPYVSPY---SDPRGLVEGSKEMEKRNVGLVHELLSLTLWKKISIMKL 271
Query: 320 SQFRNWFGIDLNIRDLFLDHPGIFYLSTKGKRHTVFLREAYERGCLIQPNPV 371
F+ F + + L L HPGIFY+S K + +TV LRE Y L+ +P+
Sbjct: 272 GHFKREFFLPDKVNVLLLKHPGIFYVSNKYRIYTVLLREGYVGSQLVDKDPL 323
>Medtr1g019170.1 | plant organelle RNA recognition domain protein |
HC | chr1:5720173-5724512 | 20130731
Length = 416
Score = 103 bits (257), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 87/352 (24%), Positives = 159/352 (45%), Gaps = 40/352 (11%)
Query: 29 HCGVSIVVRSKTTSAQY--VAARARDATFEKLMDKYKNLLKVIAVQDLILANPKNPSVSI 86
H +I++ +T+S ++ + + +D E + + K + ++++IL P N + I
Sbjct: 3 HHQTNIIILLRTSSKRHYCLWSSKKDPDLESALSRNKRWIINNQIKNIILRYPNN-QIPI 61
Query: 87 DFLSRLSQKLHLNRGATAFLRKYPHIFHIYYEPSKLQPYCRLTDAALDVSRKEAEAINAS 146
L + + L L A ++ KYP F + Q + LT +++ +E ++
Sbjct: 62 QTLQKKFKTLDLQGKALNWISKYPSCFQFH------QDHVLLTKRMMELVHEEQSLKDSL 115
Query: 147 MPVVVDRLVRILSMSASKMVPLRAIFKVWRELGLPDDFEDSVISANSSVFQLCDGHELNT 206
V V RL ++L +S + + + I ++ LG PDD+ +++ +F++ + +
Sbjct: 116 ESVFVPRLAKLLMLSLNNCLNVMKINEIKNSLGFPDDYLIGIVAKYPDLFRIRNESGRRS 175
Query: 207 HLLKLVGDLPSDGFRATVEDWRL-------VECCKEDSSVDRMEMRFSFKHGYPPGMRLT 259
++ + D + VE + CC S V +E
Sbjct: 176 SMVVELMKWNPDFAVSEVEALAMKNGVEVNFSCCLPSSWVKSLE---------------- 219
Query: 260 KTFRANVKEWQSLPYVGPYEVVSEKKKSKAGMMAMEKRAVAIVHEFLSLTVEKMVEVEKI 319
E++ +PYV PY S+ + G MEKR V +VHE LSLT+ K + + K+
Sbjct: 220 -----KFHEFELVPYVSPY---SDPRGLVEGSKEMEKRNVGLVHELLSLTLWKKISIMKL 271
Query: 320 SQFRNWFGIDLNIRDLFLDHPGIFYLSTKGKRHTVFLREAYERGCLIQPNPV 371
F+ F + + L L HPGIFY+S K + +TV LRE Y L+ +P+
Sbjct: 272 GHFKREFFLPDKVNVLLLKHPGIFYVSNKYRIYTVLLREGYVGSQLVDKDPL 323
>Medtr1g019170.2 | plant organelle RNA recognition domain protein |
HC | chr1:5720163-5724512 | 20130731
Length = 416
Score = 103 bits (257), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 87/352 (24%), Positives = 159/352 (45%), Gaps = 40/352 (11%)
Query: 29 HCGVSIVVRSKTTSAQY--VAARARDATFEKLMDKYKNLLKVIAVQDLILANPKNPSVSI 86
H +I++ +T+S ++ + + +D E + + K + ++++IL P N + I
Sbjct: 3 HHQTNIIILLRTSSKRHYCLWSSKKDPDLESALSRNKRWIINNQIKNIILRYPNN-QIPI 61
Query: 87 DFLSRLSQKLHLNRGATAFLRKYPHIFHIYYEPSKLQPYCRLTDAALDVSRKEAEAINAS 146
L + + L L A ++ KYP F + Q + LT +++ +E ++
Sbjct: 62 QTLQKKFKTLDLQGKALNWISKYPSCFQFH------QDHVLLTKRMMELVHEEQSLKDSL 115
Query: 147 MPVVVDRLVRILSMSASKMVPLRAIFKVWRELGLPDDFEDSVISANSSVFQLCDGHELNT 206
V V RL ++L +S + + + I ++ LG PDD+ +++ +F++ + +
Sbjct: 116 ESVFVPRLAKLLMLSLNNCLNVMKINEIKNSLGFPDDYLIGIVAKYPDLFRIRNESGRRS 175
Query: 207 HLLKLVGDLPSDGFRATVEDWRL-------VECCKEDSSVDRMEMRFSFKHGYPPGMRLT 259
++ + D + VE + CC S V +E
Sbjct: 176 SMVVELMKWNPDFAVSEVEALAMKNGVEVNFSCCLPSSWVKSLE---------------- 219
Query: 260 KTFRANVKEWQSLPYVGPYEVVSEKKKSKAGMMAMEKRAVAIVHEFLSLTVEKMVEVEKI 319
E++ +PYV PY S+ + G MEKR V +VHE LSLT+ K + + K+
Sbjct: 220 -----KFHEFELVPYVSPY---SDPRGLVEGSKEMEKRNVGLVHELLSLTLWKKISIMKL 271
Query: 320 SQFRNWFGIDLNIRDLFLDHPGIFYLSTKGKRHTVFLREAYERGCLIQPNPV 371
F+ F + + L L HPGIFY+S K + +TV LRE Y L+ +P+
Sbjct: 272 GHFKREFFLPDKVNVLLLKHPGIFYVSNKYRIYTVLLREGYVGSQLVDKDPL 323
>Medtr1g098960.1 | plant organelle RNA recognition domain protein |
HC | chr1:44599463-44600719 | 20130731
Length = 418
Score = 99.8 bits (247), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 88/354 (24%), Positives = 158/354 (44%), Gaps = 42/354 (11%)
Query: 29 HCGVSIVVRSKTTSAQY----VAARARDATFEKLMDKYKNLLKVIAVQDLILANPKNPSV 84
H +I++ +TTS + + +D E + + K + ++++IL P N +
Sbjct: 3 HHQTNIIILLRTTSFSKRHYCLWSSKKDPYLESALSRNKRWIINNQIKNIILRYPNN-QI 61
Query: 85 SIDFLSRLSQKLHLNRGATAFLRKYPHIFHIYYEPSKLQPYCRLTDAALDVSRKEAEAIN 144
I L + + L L A ++ KYP F + Q + LT + + +E +
Sbjct: 62 PILTLQKKFKTLDLQGKALNWISKYPSCFQFH------QDHVLLTKRMMKLVHEEQSLKD 115
Query: 145 ASMPVVVDRLVRILSMSASKMVPLRAIFKVWRELGLPDDFEDSVISANSSVFQLCDGHEL 204
+ V V RL ++L +S + + + I ++ GLPDD+ +++ S +F++ +
Sbjct: 116 SLESVFVLRLAKLLMLSLNNCLNVMKINEIKNSFGLPDDYLIGIVAKYSDLFRIRNESGR 175
Query: 205 NTHLLKLVGDLPSDGFRATVEDWRL-------VECCKEDSSVDRMEMRFSFKHGYPPGMR 257
+ ++ + D + VE + CC S V +E
Sbjct: 176 RSSMVVELMKWNPDFAVSEVEALAMKNGVEVNFSCCLPSSWVKSLE-------------- 221
Query: 258 LTKTFRANVKEWQSLPYVGPYEVVSEKKKSKAGMMAMEKRAVAIVHEFLSLTVEKMVEVE 317
+E++ +PYV PY S+ ++ G MEKR + +VHE LSLT+ K + +
Sbjct: 222 -------KFREFELVPYVSPY---SDPRRLVEGSKEMEKRNLGLVHELLSLTLWKKISIM 271
Query: 318 KISQFRNWFGIDLNIRDLFLDHPGIFYLSTKGKRHTVFLREAYERGCLIQPNPV 371
K+ F+ F + + L L H GIFY+S K + +TV LRE Y L+ NP+
Sbjct: 272 KLGHFKREFFLPDKVNVLLLKHHGIFYVSNKYRIYTVLLREGYVGSQLVDKNPL 325
>Medtr3g083350.1 | plant organelle RNA recognition domain protein |
HC | chr3:37619083-37621215 | 20130731
Length = 568
Score = 94.7 bits (234), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 91/342 (26%), Positives = 165/342 (48%), Gaps = 39/342 (11%)
Query: 50 ARDATFEKLMDKYKNLLKVIAVQDLILANPKNPSVSIDFLS--RLSQKLHLNRGATAFLR 107
RD T ++ + + V ++ L+L+ PK+ + I LS R LH R + +
Sbjct: 57 VRDRTLDRHVVMRNRIRFVQKLKTLLLSKPKH-FLPIKILSKCRAYLSLHKPRSLLSMIH 115
Query: 108 KYPHIFHIYYEP--------SKLQP-YC-RLTDAALDVSRKEAEAINASMPVVVDRLVRI 157
+YP IF ++ P +KL P C RLT AA ++ +E ++ V+ ++L ++
Sbjct: 116 RYPSIFELFTIPWPPTPLNATKLYPQLCVRLTPAAAALAAEELNLKSSISTVLANKLQKL 175
Query: 158 LSMSASKMVPLRAIFKVWRELGLPDDFEDSVISANSSVFQLCDGH-----ELNTHLLKLV 212
L +S+ + + L + + +LGLP +F + + + F++ D EL + L
Sbjct: 176 LMLSSHRRLLLAKLVHLAPDLGLPPNFRSRLCNDHPDKFKIVDTSYGRALELVSWDTNLA 235
Query: 213 GDLPSDGFRATVEDWRLVECCKEDSSVDRMEMR-FSFKH-GYPPGMRLTKTFRANVKEWQ 270
LP +E S+D + R FK G+ L + R + +++
Sbjct: 236 KPLPP----------------RESHSLDLIVDRPLKFKQLRLRKGLNLKRPHRDYLLKFE 279
Query: 271 SLPYVGPYEVVSEKKKSKAGMMAMEKRAVAIVHEFLSLTVEKMVEVEKISQFRNWFGIDL 330
+P V PY +E ++ + EKR A++ E L +T+EK ++ ++ FR FG+
Sbjct: 280 EMPEVCPYNNPAESSTKES--IEAEKRCCAVIREVLGMTIEKRTLIDHLTHFRKEFGLPN 337
Query: 331 NIRDLFLDHPGIFYLSTKGKRHTVFLREAY-ERGCLIQPNPV 371
+R + + HP +FY S KG+R +VFL E + E+G L++ + V
Sbjct: 338 KLRGMIVRHPELFYTSLKGQRDSVFLVERFDEKGNLLEKDEV 379
>Medtr3g030020.1 | plant organelle RNA recognition domain protein |
HC | chr3:9470357-9471627 | 20130731
Length = 373
Score = 91.7 bits (226), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 72/274 (26%), Positives = 133/274 (48%), Gaps = 27/274 (9%)
Query: 100 RGATAFLRKYPHIFHIYYEPSKLQPYCRLTDAALDVSRKEAEAINASMPVVVDRLVRILS 159
R + ++ KYP F + Q + LT +++ +E ++ V V RL ++L
Sbjct: 32 RISLNWISKYPSCFQFH------QDHVLLTKRMMELVHEEQSLKDSLESVFVPRLAKLLM 85
Query: 160 MSASKMVPLRAIFKVWRELGLPDDFEDSVISANSSVFQL-CDGHELNTHLLKLVGDLPSD 218
S + + + I ++ LG PDD+ ++ +F++ + +++ +++L+ P
Sbjct: 86 FSLNNCLNVMKINEIKNSLGFPDDYLIGIVMKYPDLFRIRNESGRISSMVVELMKWNP-- 143
Query: 219 GFRATVEDWRLVECCKEDSSVDRMEMRFSFKHGYPPG-MRLTKTFRANVKEWQSLPYVGP 277
D+ + E + + + +F + P ++ + FR E++ +PYV P
Sbjct: 144 -------DFSVSEVA---ALAMKNGVEVNFSYCLPSSWVKSLEKFR----EFELVPYVSP 189
Query: 278 YEVVSEKKKSKAGMMAMEKRAVAIVHEFLSLTVEKMVEVEKISQFRNWFGIDLNIRDLFL 337
Y S+ + G MEKR V +VHE LSLT+ K + + K+ F+ F + + L L
Sbjct: 190 Y---SDPRGLVEGSKEMEKRNVGLVHELLSLTLWKKISIMKLGHFKREFFLPDKVNVLLL 246
Query: 338 DHPGIFYLSTKGKRHTVFLREAYERGCLIQPNPV 371
HPGIFY+S K + +TV LRE Y L+ +P+
Sbjct: 247 KHPGIFYVSNKYRIYTVLLREGYVGSQLVDKDPL 280
>Medtr0153s0070.2 | plant organelle RNA recognition domain protein |
HC | scaffold0153:34902-38440 | 20130731
Length = 335
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 84/337 (24%), Positives = 151/337 (44%), Gaps = 32/337 (9%)
Query: 23 LSTSKQHCGVSIVVRSKTTS--AQYVAARARDATFEKLMDKYKNLLKVIAVQDLILANPK 80
+++ +++C S R TTS Q + + R E +K+K K++ + +L+ P+
Sbjct: 15 INSWRKNCCYSHCERWMTTSKRVQDRSKKKRVHELEAATEKWKITSKIVFLIELLEQEPE 74
Query: 81 NPSVSIDFLSRLSQKLHLNRG--ATAFLRKYPHIFHIYYEPSKLQPYCRLTDAALDVSRK 138
+ + LS +++ L + + FLRK P +F +Y + + + +C LT A + +
Sbjct: 75 I-VIPVRSLSHYRKQISLPKPHRISDFLRKTPKLFELYKDRNGVL-WCGLTQKAEVLMEE 132
Query: 139 EAEAINASMPVVVDRLVRILSMSASKMVPLRAIFKVWRELGLPDDFEDSVISANSSVFQL 198
I + + + R+L MS K V L I R+ GLP DF + +F++
Sbjct: 133 HKRVIEENEDKAAEYVTRLLMMSVDKRVQLDKIAHFRRDFGLPMDFRTHWVHKYPQLFRV 192
Query: 199 CDGHELNTHLLKLVGDLPSDGFRATVEDWRLVECCKEDSSVDRME-----------MRFS 247
+ L+LV + +W + E K++ + ME +
Sbjct: 193 VKPSLDDVEFLELV---------SWNSEWAITEIEKKNKMI--MEGVTETEHTPGLLSLP 241
Query: 248 FKHGYPPGM-RLTKTFRANVKEWQSLPYVGPYEVVSEKKKSKAGMMAMEKRAVAIVHEFL 306
F +P R+ + +K +Q Y+ PY ++ K K G + +KRAVA++HE L
Sbjct: 242 FPLKFPANFKRVHSYYGEKIKMFQERTYLSPY---ADAKGLKPGSLEFDKRAVAVMHELL 298
Query: 307 SLTVEKMVEVEKISQFRNWFGIDLNIRDLFLDHPGIF 343
S TVEK + + ++ FR + + L L H GIF
Sbjct: 299 SFTVEKRLVTDHLTHFRWELVMPQKLMRLLLKHCGIF 335
>Medtr0153s0070.1 | plant organelle RNA recognition domain protein |
HC | scaffold0153:36398-37624 | 20130731
Length = 373
Score = 82.4 bits (202), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 86/351 (24%), Positives = 148/351 (42%), Gaps = 71/351 (20%)
Query: 40 TTS--AQYVAARARDATFEKLMDKYKNLLKVIAVQDLILANPKNPSVSIDFLSRLSQKLH 97
TTS Q + + R E +K+K K++ + +L+ P+ + + LS +++
Sbjct: 2 TTSKRVQDRSKKKRVHELEAATEKWKITSKIVFLIELLEQEPEI-VIPVRSLSHYRKQIS 60
Query: 98 LNRG--ATAFLRKYPHIFHIYYEPSKLQPYCRLTDAALDVSRKEAEAINASMPVVVDRLV 155
L + + FLRK P +F +Y + + + +C LT A + + I + + +
Sbjct: 61 LPKPHRISDFLRKTPKLFELYKDRNGVL-WCGLTQKAEVLMEEHKRVIEENEDKAAEYVT 119
Query: 156 RILSMSASKMVPLRAIFKVWRELGLPDDFEDSVISANSSVFQLCDGHELNTHLLKLVGDL 215
R+L MS K V L I R+ GLP DF + +F++ + L+LV
Sbjct: 120 RLLMMSVDKRVQLDKIAHFRRDFGLPMDFRTHWVHKYPQLFRVVKPSLDDVEFLELV--- 176
Query: 216 PSDGFRATVEDWRLVECCKEDSSVDRMEMRFSFKHGYPPGM--------------RLTKT 261
+ +W + E K++ +M M + + PG+ R+
Sbjct: 177 ------SWNSEWAITEIEKKN----KMIMEGVTETEHTPGLLSLPFPLKFPANFKRVHSY 226
Query: 262 FRANVKEWQSLPYVGPYEVVSEKKKSKAGMMAMEKRAVAIVHEFLSLTVEKMVEVEKISQ 321
+ +K +Q Y+ PY ++ K K G + +KRAVA++HE LS TVEK
Sbjct: 227 YGEKIKMFQERTYLSPY---ADAKGLKPGSLEFDKRAVAVMHELLSFTVEK--------- 274
Query: 322 FRNWFGIDLNIRDLFLDHPGIFYLSTKGKRHTVFLREAYERGCLIQPNPVY 372
+GKR +VFL EAYE LI+ +P++
Sbjct: 275 --------------------------RGKRFSVFLTEAYEGSELIEKSPLF 299
>Medtr3g074730.1 | plant organelle RNA recognition domain protein |
HC | chr3:33769164-33767587 | 20130731
Length = 404
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 81/327 (24%), Positives = 149/327 (45%), Gaps = 21/327 (6%)
Query: 51 RDATFEKLMDKYKNLLKVIAVQDLILANPKNPSVSIDFLSRLSQKLHLNRG--ATAFLRK 108
R FE+++ K + L++ + L+N + +D +L ++L RG +++
Sbjct: 59 RVTAFEQIV-KRETLMRFVTRSKNYLSNQPEHVLQLDDAGKLHRELGFPRGRKIAKSIQQ 117
Query: 109 YPHIFHIYYEPSKLQPYCRLTDAALDVSRKEAEAINASMPVVVDRLVRILSMSASKMVPL 168
+P +F + Y + + + TD ++ +E + + V+++ ++L MS + L
Sbjct: 118 HPPLF-LTYRHTDGKMWFGFTDLMEELLAEEKSIMESMELDRVEKVRKLLMMSRFHRISL 176
Query: 169 RAIFKVWRELGLPDDFEDSVISANSSVFQLCDGHELN----THLLKLVGDLPSDGFRATV 224
I V G+PDDF D V + F++ D + +L+LV P A
Sbjct: 177 AKIHHVRNLFGIPDDFRDRV-EKYPNYFRIVDDKNKDDGKKVRVLELVNWDPLLAVSAIE 235
Query: 225 EDWRLVECCKEDSSVDRMEMRFSFKHGYPPGMRLTKTFRANVKEWQSLPYVGPYEVVSEK 284
+++ ED + + + F KHG + + + N+ +LP V PY S+
Sbjct: 236 KEF----MVNEDDA--KRKFTFPVKHGKDLELGIEDERKMNL--LNALPLVSPY---SDG 284
Query: 285 KKSKAGMMAMEKRAVAIVHEFLSLTVEKMVEVEKISQFRNWFGIDLNIRDLFLDHPGIFY 344
K + EK V ++HEFLSLT+EK + + +F+ F + + + + P FY
Sbjct: 285 AKFDVWTLEAEKYRVGLIHEFLSLTLEKRASIHHLVEFKEEFSLTKHTYHMLVKQPRAFY 344
Query: 345 LSTKGKRHTVFLREAYER-GCLIQPNP 370
L+ VFL+E Y+R G LI +P
Sbjct: 345 LAGTEMNWVVFLKEGYDRNGVLIHKDP 371
>Medtr3g448960.1 | plant organelle RNA recognition domain protein |
HC | chr3:16485012-16487013 | 20130731
Length = 463
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 77/354 (21%), Positives = 145/354 (40%), Gaps = 67/354 (18%)
Query: 29 HCGVSIVVRSKTTSAQY----VAARARDATFEKLMDKYKNLLKVIAVQDLILANPKNPSV 84
H +I++ +TTS + + +D E + + K + ++++IL P N +
Sbjct: 3 HHQTNIIILLRTTSFSKRHYCLWSSKKDPYLESALSRNKRWIINNQIKNIILRYPNN-QI 61
Query: 85 SIDFLSRLSQKLHLNRGATAFLRKYPHIFHIYYEPSKLQPYCRLTDAALDVSRKEAEAIN 144
I L + + L L A ++ KYP F + Q + LT + + +E +
Sbjct: 62 PILTLQKKFKTLDLQGKALNWISKYPSCFQFH------QDHVLLTKRMMKLVHEEQSLKD 115
Query: 145 ASMPVVVDRLVRILSMSASKMVPLRAIFKVWRELGLPDDFEDSVISANSSVFQLCDGHEL 204
+ V V RL ++L +S + + + I ++ GLPDD+ +++ S +F++ +
Sbjct: 116 SLESVFVLRLAKLLMLSLNNCLNVMKINEIKNSFGLPDDYLIGIVAKYSDLFRIRNESGR 175
Query: 205 NTHLLKLVGDLPSDGFRATVEDWRL-------VECCKEDSSVDRMEMRFSFKHGYPPGMR 257
+ ++ + D + VE + CC S V +E
Sbjct: 176 RSSMVVELMKWNPDFAVSEVEALAMKNGVEVNFSCCLPSSWVKSLE-------------- 221
Query: 258 LTKTFRANVKEWQSLPYVGPYEVVSEKKKSKAGMMAMEKRAVAIVHEFLSLTVEKMVEVE 317
+E++ +PYV PY S+ ++ G MEKR + +VHE LSLT+ K + +
Sbjct: 222 -------KFREFELVPYVSPY---SDPRRLVEGSKEMEKRNLGLVHELLSLTLWKKISIM 271
Query: 318 KISQFRNWFGIDLNIRDLFLDHPGIFYLSTKGKRHTVFLREAYERGCLIQPNPV 371
K+ F+ G+F+ +RE Y L+ NP+
Sbjct: 272 KLGHFKK----------------GVFF---------CLIREGYVGSQLVDKNPL 300
>Medtr8g102038.1 | plant organelle RNA recognition domain protein |
HC | chr8:42900320-42901238 | 20130731
Length = 238
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 59/214 (27%), Positives = 95/214 (44%), Gaps = 35/214 (16%)
Query: 116 YYEPSK-LQPYCRLTDAALDVSRKEAEAINA--SMPVVVDRLVRILSMSASKMVPLRAIF 172
Y++PS L P +LT AL + ++E E N+ + RL R+L ++ P+ I
Sbjct: 43 YFQPSPGLPPRVKLTAQALALHKEEMEVHNSRTNREDAAQRLSRLLMLAGMARFPIYVIE 102
Query: 173 KVWRELGLPDDFEDSVISANSSVFQLCDGHELNTHLLKLVGDLPSDGFRATVEDWRLVEC 232
K+ ++GLP D+ ++++ F +C V + P G ++ L
Sbjct: 103 KLKWDMGLPHDYVTTLLAHYPDYFDVC------------VVEDPLSGKEVLALEFVL--- 147
Query: 233 CKEDSSVDRMEMR-FSFKHG-------------YPPGMRLTKTFRANVKEWQSLPYVGPY 278
+++ SV +E R F +G P L K + V+ WQ+LPY+ PY
Sbjct: 148 WRKELSVSELEKRVMGFNYGADNRRYDIQFPMFLPKSFALEKRVKTWVEGWQTLPYISPY 207
Query: 279 EVVSEKKKSKAGMMAMEKRAVAIVHEFLSLTVEK 312
E + EK +VAI+HE LSL V K
Sbjct: 208 ENAFHLDSNSD---QAEKWSVAILHELLSLLVSK 238