Miyakogusa Predicted Gene

Lj0g3v0288939.2

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0288939.2 Non Chatacterized Hit- tr|Q9M399|Q9M399_ARATH
Putative uncharacterized protein F2K15.260
OS=Arabidop,45.6,2e-18,seg,NULL; Putative isomerase YbhE,NULL; no
description,WD40/YVTN repeat-like-containing domain; WD40,CUFF.19327.2
         (534 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G49400.1 | Symbols:  | Transducin/WD40 repeat-like superfamil...   398   e-111
AT3G49400.2 | Symbols:  | Transducin/WD40 repeat-like superfamil...   357   1e-98

>AT3G49400.1 | Symbols:  | Transducin/WD40 repeat-like superfamily
           protein | chr3:18319249-18324373 REVERSE LENGTH=892
          Length = 892

 Score =  398 bits (1022), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 224/550 (40%), Positives = 320/550 (58%), Gaps = 31/550 (5%)

Query: 1   MGDNDKLLESSGVHEASFFLLKEVITXXXXXXXXXXXXXXXQYSSKMLLAIGKGSGSFEI 60
           M + + L  S  V+++SFFLLKEV+                 Y++ M LAIGKGSGSFE+
Sbjct: 358 MSNKEDLQNSVEVYKSSFFLLKEVVAVNPVQVSTLSFVVSNHYNA-MHLAIGKGSGSFEV 416

Query: 61  WLCDISTREFDKLGSYDAHDCIITGLAWAFGGRFLYSCSQDNLLHSWILHESRLDEVSIL 120
           W C+ISTR+F+++ S +AH+ ++TGLAW++ GR LYSCSQDN + SWIL E+ + EV I 
Sbjct: 417 WKCEISTRKFEQIVSTNAHNQVVTGLAWSYDGRCLYSCSQDNYVRSWILCENAISEVPIP 476

Query: 121 SDFPR-SNDSICPSRDAFNSCFGVAVSHGNLVIATVNCFDVEKLNRMYEGRILRAAIEYF 179
           ++ P  S+ +  P  D F SC GVA+S GNL +A V  F+VE LN MY+ R  +AA+E+ 
Sbjct: 477 ANTPGLSSTTDLP--DDFLSCLGVALSPGNLAVALVRNFNVELLNPMYQARSQKAAVEFL 534

Query: 180 WIGGLHVDVWLKPPFSCYIEKYSSFPEKELTYWGANIIWSLNQYQCLDKPLVLWDIIAAL 239
           W G        +       E    F + E   W +NI+WSL ++  L+KPLVLWD++AA+
Sbjct: 535 WNGAQQSGE-SEDSTETVTEAILGFSKNEFANWESNILWSLKEFNYLNKPLVLWDMVAAM 593

Query: 240 LGLKDNKSKYVENLLINWLSLSFLGYHMDLLPENVLSCVSSSLPNVPSRLLHLLNIICRR 299
           L  K +  ++VE +L  WLS+S+LG+H D+  E+++  ++    +VPSRLLH+LN+I RR
Sbjct: 594 LAFKQSMPEFVELVLTKWLSVSYLGFHDDISMEDLVPKITKRFSDVPSRLLHILNVISRR 653

Query: 300 VVLAELDADQITGINSKIRNLEGACPDTEKKITMWXXXXXXXXXXXXXXXVGLTFSAFRN 359
           V+L+EL  ++I       R L+G   + E +I +W               VGL+FSA+  
Sbjct: 654 VMLSELKTEEIN------RKLQGQRTNDEGEIDLWLKLLQESERELRERLVGLSFSAYLL 707

Query: 360 SMSSFKATPSRPG-CWYLVGLAQMEQWVALDQEHVREQLKFIASELTHEKRFVTSGYS-- 416
           + SS + T S P   W   GLA ++QWV ++++ V  QL+ ++ E+   +   ++     
Sbjct: 708 AESS-QGTISPPSWNWRPAGLALLQQWVEINRDIVHSQLETLSLEVKSSRTRSSNSTETA 766

Query: 417 -EVEPCSYCSASVVFESPEFGLCQG-----------ENCSSGNVKRHQLLRCAVCMEVCP 464
            E E C YC+A V F S E   C+            E C     + H+L RC V M+VCP
Sbjct: 767 LEEEKCPYCAAPVNFHSAEEAFCESSHQKKKKSKDKERCD----ESHKLERCCVSMQVCP 822

Query: 465 STPLWFCVCCHRFAFRLAPEPLFRMSSFCLDLDXXXXXXXXXXXXRPLCPFCGILLQRKQ 524
            TPLWFC CC+R    LAPE LF + SF  DL             +P C FCG+LLQRKQ
Sbjct: 823 PTPLWFCKCCNRMTLELAPETLFALPSFPSDLKSLPKSSFSKVASKPFCLFCGVLLQRKQ 882

Query: 525 PDFLLSPTPV 534
           P+FLLS +PV
Sbjct: 883 PEFLLSASPV 892


>AT3G49400.2 | Symbols:  | Transducin/WD40 repeat-like superfamily
           protein | chr3:18319249-18324373 REVERSE LENGTH=874
          Length = 874

 Score =  357 bits (916), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 211/550 (38%), Positives = 304/550 (55%), Gaps = 49/550 (8%)

Query: 1   MGDNDKLLESSGVHEASFFLLKEVITXXXXXXXXXXXXXXXQYSSKMLLAIGKGSGSFEI 60
           M + + L  S  V+++SFFLLKEV+                 Y++ M LAIGKGSGSFE+
Sbjct: 358 MSNKEDLQNSVEVYKSSFFLLKEVVAVNPVQVSTLSFVVSNHYNA-MHLAIGKGSGSFEV 416

Query: 61  WLCDISTREFDKLGSYDAHDCIITGLAWAFGGRFLYSCSQDNLLHSWILHESRLDEVSIL 120
           W C+ISTR+F+++ S +AH+ +                  DN + SWIL E+ + EV I 
Sbjct: 417 WKCEISTRKFEQIVSTNAHNQV------------------DNYVRSWILCENAISEVPIP 458

Query: 121 SDFPR-SNDSICPSRDAFNSCFGVAVSHGNLVIATVNCFDVEKLNRMYEGRILRAAIEYF 179
           ++ P  S+ +  P  D F SC GVA+S GNL +A V  F+VE LN MY+ R  +AA+E+ 
Sbjct: 459 ANTPGLSSTTDLP--DDFLSCLGVALSPGNLAVALVRNFNVELLNPMYQARSQKAAVEFL 516

Query: 180 WIGGLHVDVWLKPPFSCYIEKYSSFPEKELTYWGANIIWSLNQYQCLDKPLVLWDIIAAL 239
           W G        +       E    F + E   W +NI+WSL ++  L+KPLVLWD++AA+
Sbjct: 517 WNGAQQSGE-SEDSTETVTEAILGFSKNEFANWESNILWSLKEFNYLNKPLVLWDMVAAM 575

Query: 240 LGLKDNKSKYVENLLINWLSLSFLGYHMDLLPENVLSCVSSSLPNVPSRLLHLLNIICRR 299
           L  K +  ++VE +L  WLS+S+LG+H D+  E+++  ++    +VPSRLLH+LN+I RR
Sbjct: 576 LAFKQSMPEFVELVLTKWLSVSYLGFHDDISMEDLVPKITKRFSDVPSRLLHILNVISRR 635

Query: 300 VVLAELDADQITGINSKIRNLEGACPDTEKKITMWXXXXXXXXXXXXXXXVGLTFSAFRN 359
           V+L+EL  ++I       R L+G   + E +I +W               VGL+FSA+  
Sbjct: 636 VMLSELKTEEIN------RKLQGQRTNDEGEIDLWLKLLQESERELRERLVGLSFSAYLL 689

Query: 360 SMSSFKATPSRPG-CWYLVGLAQMEQWVALDQEHVREQLKFIASELTHEKRFVTSGYS-- 416
           + SS + T S P   W   GLA ++QWV ++++ V  QL+ ++ E+   +   ++     
Sbjct: 690 AESS-QGTISPPSWNWRPAGLALLQQWVEINRDIVHSQLETLSLEVKSSRTRSSNSTETA 748

Query: 417 -EVEPCSYCSASVVFESPEFGLCQG-----------ENCSSGNVKRHQLLRCAVCMEVCP 464
            E E C YC+A V F S E   C+            E C     + H+L RC V M+VCP
Sbjct: 749 LEEEKCPYCAAPVNFHSAEEAFCESSHQKKKKSKDKERCD----ESHKLERCCVSMQVCP 804

Query: 465 STPLWFCVCCHRFAFRLAPEPLFRMSSFCLDLDXXXXXXXXXXXXRPLCPFCGILLQRKQ 524
            TPLWFC CC+R    LAPE LF + SF  DL             +P C FCG+LLQRKQ
Sbjct: 805 PTPLWFCKCCNRMTLELAPETLFALPSFPSDLKSLPKSSFSKVASKPFCLFCGVLLQRKQ 864

Query: 525 PDFLLSPTPV 534
           P+FLLS +PV
Sbjct: 865 PEFLLSASPV 874