Miyakogusa Predicted Gene

Lj0g3v0288639.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0288639.1 Non Chatacterized Hit- tr|G1MEE5|G1MEE5_AILME
Uncharacterized protein OS=Ailuropoda melanoleuca
GN=R,30.21,2e-17,seg,NULL; no description,NULL; RNase_P_p30,RNase P
subunit p30; PHP domain-like,Polymerase/histidino,CUFF.19304.1
         (207 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma13g26680.1                                                       301   4e-82
Glyma10g24520.1                                                       218   4e-57

>Glyma13g26680.1 
          Length = 582

 Score =  301 bits (770), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 144/196 (73%), Positives = 159/196 (81%)

Query: 1   MGFFDLNIPYPESTRATKSTVESTRTKLAVKAMELGYTGIAYNRTIKGVMSDQHRCXXXX 60
           MG+FDLNIPYP+ + A K T +  RT+LAVKAME GYTGIAYNRTIKGVMSD HRC    
Sbjct: 1   MGYFDLNIPYPDPSPANKPTEQGNRTRLAVKAMEFGYTGIAYNRTIKGVMSDHHRCSISP 60

Query: 61  XXXXXXXXXXPVLTSSAKLHRNLLGIPSSTPFRQYTRLTVCVDNPSQAQSLNAGNPILKT 120
                     P L+ SA LHR+LL +P STPFRQYTRLTVCVD+ SQAQ+LN+GNPILKT
Sbjct: 61  LTLSSLLNVLPSLSLSANLHRHLLHVPLSTPFRQYTRLTVCVDSASQAQALNSGNPILKT 120

Query: 121 YDLVAVKPSNQVAFDLACERMEVDIFSFDFSTNLPFRLKLPMVKAATQRGVCFEVTYSGL 180
           YDLVAVKP NQ+AFDLACERMEVDI S DFS  LPFRLK PMVKAATQRGVCFEVTYSGL
Sbjct: 121 YDLVAVKPLNQIAFDLACERMEVDIISIDFSAKLPFRLKQPMVKAATQRGVCFEVTYSGL 180

Query: 181 IADVQIRRLLISNAKV 196
            AD+QIRR LIS+AK+
Sbjct: 181 FADIQIRRQLISSAKL 196


>Glyma10g24520.1 
          Length = 167

 Score =  218 bits (554), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 110/163 (67%), Positives = 122/163 (74%)

Query: 2   GFFDLNIPYPESTRATKSTVESTRTKLAVKAMELGYTGIAYNRTIKGVMSDQHRCXXXXX 61
           G+FDLNIPYPE + A K+  +  RT LAVKAMELGY GIAYNR IKG+MSD HRC     
Sbjct: 1   GYFDLNIPYPEPSPANKAIEQGNRTGLAVKAMELGYIGIAYNRMIKGIMSDHHRCSISPL 60

Query: 62  XXXXXXXXXPVLTSSAKLHRNLLGIPSSTPFRQYTRLTVCVDNPSQAQSLNAGNPILKTY 121
                    P L+ SA LH +LL +P STPFRQYTRLTVCVD+ SQAQ+LN GNPILKTY
Sbjct: 61  ILSSFLNVLPSLSLSANLHHHLLHVPLSTPFRQYTRLTVCVDSASQAQALNLGNPILKTY 120

Query: 122 DLVAVKPSNQVAFDLACERMEVDIFSFDFSTNLPFRLKLPMVK 164
           DLV VKP NQ+AFDLACERME DI S DFS  LPFRLK P+VK
Sbjct: 121 DLVIVKPLNQIAFDLACERMEDDIVSIDFSVKLPFRLKQPVVK 163