Miyakogusa Predicted Gene

Lj0g3v0288639.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0288639.1 Non Chatacterized Hit- tr|G1MEE5|G1MEE5_AILME
Uncharacterized protein OS=Ailuropoda melanoleuca
GN=R,30.21,2e-17,seg,NULL; no description,NULL; RNase_P_p30,RNase P
subunit p30; PHP domain-like,Polymerase/histidino,CUFF.19304.1
         (207 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G59980.2 | Symbols:  | Polymerase/histidinol phosphatase-like...   236   7e-63
AT5G59980.1 | Symbols:  | Polymerase/histidinol phosphatase-like...   236   9e-63

>AT5G59980.2 | Symbols:  | Polymerase/histidinol phosphatase-like |
           chr5:24147207-24149783 FORWARD LENGTH=705
          Length = 705

 Score =  236 bits (603), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 113/199 (56%), Positives = 141/199 (70%), Gaps = 3/199 (1%)

Query: 1   MGFFDLNIPYPESTRATKSTVESTRT---KLAVKAMELGYTGIAYNRTIKGVMSDQHRCX 57
           MGFFDL+IPY E  R+    +   +T   KLA KAMELGY GIA+NR+IKGVMSD+  C 
Sbjct: 1   MGFFDLSIPYNEPPRSGGKEIAGGKTLRLKLATKAMELGYVGIAHNRSIKGVMSDKDSCT 60

Query: 58  XXXXXXXXXXXXXPVLTSSAKLHRNLLGIPSSTPFRQYTRLTVCVDNPSQAQSLNAGNPI 117
                        P L SS   HR+LLG+P +TPFRQYTRLTV V++ +Q QSLN+GNPI
Sbjct: 61  IPLLTLGSLIKVAPRLASSVGFHRDLLGVPRTTPFRQYTRLTVHVESNAQCQSLNSGNPI 120

Query: 118 LKTYDLVAVKPSNQVAFDLACERMEVDIFSFDFSTNLPFRLKLPMVKAATQRGVCFEVTY 177
           LK+YD++AV+P NQ AFD ACE+ EVD+ S DF+  + FRLK PMVKAA QRG+ FE+ Y
Sbjct: 121 LKSYDIIAVRPMNQNAFDYACEKAEVDLISIDFTDKMLFRLKHPMVKAAIQRGIYFEIKY 180

Query: 178 SGLIADVQIRRLLISNAKV 196
           S ++ D Q RR +ISNAK+
Sbjct: 181 SDILMDAQTRRQVISNAKL 199


>AT5G59980.1 | Symbols:  | Polymerase/histidinol phosphatase-like |
           chr5:24147207-24149392 FORWARD LENGTH=581
          Length = 581

 Score =  236 bits (601), Expect = 9e-63,   Method: Compositional matrix adjust.
 Identities = 113/199 (56%), Positives = 141/199 (70%), Gaps = 3/199 (1%)

Query: 1   MGFFDLNIPYPESTRATKSTVESTRT---KLAVKAMELGYTGIAYNRTIKGVMSDQHRCX 57
           MGFFDL+IPY E  R+    +   +T   KLA KAMELGY GIA+NR+IKGVMSD+  C 
Sbjct: 1   MGFFDLSIPYNEPPRSGGKEIAGGKTLRLKLATKAMELGYVGIAHNRSIKGVMSDKDSCT 60

Query: 58  XXXXXXXXXXXXXPVLTSSAKLHRNLLGIPSSTPFRQYTRLTVCVDNPSQAQSLNAGNPI 117
                        P L SS   HR+LLG+P +TPFRQYTRLTV V++ +Q QSLN+GNPI
Sbjct: 61  IPLLTLGSLIKVAPRLASSVGFHRDLLGVPRTTPFRQYTRLTVHVESNAQCQSLNSGNPI 120

Query: 118 LKTYDLVAVKPSNQVAFDLACERMEVDIFSFDFSTNLPFRLKLPMVKAATQRGVCFEVTY 177
           LK+YD++AV+P NQ AFD ACE+ EVD+ S DF+  + FRLK PMVKAA QRG+ FE+ Y
Sbjct: 121 LKSYDIIAVRPMNQNAFDYACEKAEVDLISIDFTDKMLFRLKHPMVKAAIQRGIYFEIKY 180

Query: 178 SGLIADVQIRRLLISNAKV 196
           S ++ D Q RR +ISNAK+
Sbjct: 181 SDILMDAQTRRQVISNAKL 199