Miyakogusa Predicted Gene

Lj0g3v0279509.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0279509.1 tr|G7L0Z7|G7L0Z7_MEDTR E3 ubiquitin-protein
ligase MARCH3 OS=Medicago truncatula GN=MTR_7g010610
PE=,43.75,0.000000000000007, ,CUFF.18593.1
         (98 letters)

Database: trembl 
           41,451,118 sequences; 13,208,986,710 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

K7MUH1_SOYBN (tr|K7MUH1) Uncharacterized protein OS=Glycine max ...   109   3e-22
G7L0Z7_MEDTR (tr|G7L0Z7) E3 ubiquitin-protein ligase MARCH3 OS=M...    89   4e-16

>K7MUH1_SOYBN (tr|K7MUH1) Uncharacterized protein OS=Glycine max PE=4 SV=1
          Length = 252

 Score =  109 bits (272), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 47/98 (47%), Positives = 69/98 (70%)

Query: 1   MSERWRIPFTETRVLTPLQLAERGINRLLRSMNVDFSLRNPTVGMIFGTALLLFLAAMVI 60
           + E W IP T   + +PL LA+R    L+ SMN DFSL+NP+ G+IFG +L++F+A ++I
Sbjct: 137 LREEWTIPGTSIEIWSPLVLADRATKGLIDSMNKDFSLKNPSGGVIFGMSLVIFIAVLLI 196

Query: 61  RDASHYAPSKEDKIVHVLFCALMVIITPIYILSWIVEC 98
           +DA   AP KE+K    L+CA+M I  P+YILSW+++C
Sbjct: 197 KDAYECAPPKEEKFARFLYCAVMTISVPVYILSWVLQC 234


>G7L0Z7_MEDTR (tr|G7L0Z7) E3 ubiquitin-protein ligase MARCH3 OS=Medicago
           truncatula GN=MTR_7g010610 PE=4 SV=1
          Length = 231

 Score = 89.4 bits (220), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 44/98 (44%), Positives = 65/98 (66%), Gaps = 5/98 (5%)

Query: 1   MSERWRIPFTETRVLTPLQLAERGINRLLRSMNVDFSLRNPTVGMIFGTALLLFLAAMVI 60
           +S+RW IP T   +++PL+L ERG N L+RSM     + N   G+IFGT LL+FLA+M+I
Sbjct: 116 VSDRWTIPNTNIGMVSPLRLIERGNNHLIRSM-----VLNTAGGVIFGTLLLMFLASMII 170

Query: 61  RDASHYAPSKEDKIVHVLFCALMVIITPIYILSWIVEC 98
           RDA +  P KED    +++ A++ I  P+Y+  WI+ C
Sbjct: 171 RDAYYLTPPKEDMCSRIMYLAVVFITVPLYVFYWILAC 208