Miyakogusa Predicted Gene

Lj0g3v0279509.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0279509.1 tr|G7L0Z7|G7L0Z7_MEDTR E3 ubiquitin-protein
ligase MARCH3 OS=Medicago truncatula GN=MTR_7g010610
PE=,43.75,0.000000000000007, ,CUFF.18593.1
         (98 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g010610.1 | RING-variant domain protein | LC | chr7:264569...    47   6e-06

>Medtr7g010610.1 | RING-variant domain protein | LC |
           chr7:2645699-2643632 | 20130731
          Length = 173

 Score = 46.6 bits (109), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 30/45 (66%)

Query: 54  FLAAMVIRDASHYAPSKEDKIVHVLFCALMVIITPIYILSWIVEC 98
           FLA+M+IRDA +  P KED    +++ A++ I  P+Y+  WI+ C
Sbjct: 106 FLASMIIRDAYYLTPPKEDMCSRIMYLAVVFITVPLYVFYWILAC 150