Miyakogusa Predicted Gene

Lj0g3v0277629.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0277629.1 Non Chatacterized Hit- tr|J3N1K1|J3N1K1_ORYBR
Uncharacterized protein OS=Oryza brachyantha
GN=OB10G1,68.97,0.00009,seg,NULL,CUFF.18436.1
         (331 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G41610.1 | Symbols:  | unknown protein; Has 35333 Blast hits ...   253   2e-67

>AT2G41610.1 | Symbols:  | unknown protein; Has 35333 Blast hits to
           34131 proteins in 2444 species: Archae - 798; Bacteria -
           22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses
           - 0; Other Eukaryotes - 9610 (source: NCBI BLink). |
           chr2:17347181-17348113 FORWARD LENGTH=310
          Length = 310

 Score =  253 bits (645), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 137/295 (46%), Positives = 181/295 (61%), Gaps = 8/295 (2%)

Query: 19  WDIE-EIHATFFKCISWQLEETLDTITCPYHYVCDRTHPADNYPLAVDILVFLFTTASYF 77
           W+++ +   TFFKC  WQ E+TLD I CP+HY CD  +  D YP   D+LVF F T +Y 
Sbjct: 5   WEMDSDRKKTFFKCTKWQFEDTLDPINCPFHYFCDSIYAGD-YPQITDVLVFFFVTVTYL 63

Query: 78  ITLVIVIMDVITSGTGRGRILLSQSKR--FXXXXXXXXXXXXXXAFAKGPQINTIFPLSC 135
            TL++V+  VI+             K   +                AKG +INT+FP+S 
Sbjct: 64  TTLIVVVRKVISRRRRENDDDGDDDKARRYLLPSGPISLPLIILILAKGQRINTLFPISI 123

Query: 136 TGPXXXXXXXXXXXXFDNGIEPHKDIKYTFFAASTISGILHASLYLDSVVLPYYTGFDAL 195
            GP            F+N IE  K+  + FF ASTISGILHASLYLD+V+LPYYTGFDAL
Sbjct: 124 FGPAILQLVQLSVLLFENNIE--KEASFVFFEASTISGILHASLYLDAVILPYYTGFDAL 181

Query: 196 MTSTFSGECVSCICRKEALVVGGKLVRYRGWSMTTFFVVGVLCLRLVCKISGENAW-KLM 254
           +TSTFSG C SCICRKE L+VGGK+V YRGWS TTF VVGVL LR++CK+  E    K +
Sbjct: 182 VTSTFSGVCKSCICRKEPLIVGGKIVSYRGWSSTTFLVVGVLFLRIICKLCKEEGINKRV 241

Query: 255 LSIKTLMKKLSWILITVDCVYLIANSPPERAML-RAAAFGSIFVLILLHVLKEAC 308
           L +K +++ L+ +++  DCVYL   SP E  +L R   FG + +LI ++V+ + C
Sbjct: 242 LVVKNVVQGLTLLVLIRDCVYLAVMSPVEEPILFRVFVFGFLLLLICVYVITKVC 296