Miyakogusa Predicted Gene
- Lj0g3v0274839.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj0g3v0274839.1 tr|G7JBQ2|G7JBQ2_MEDTR Serine/threonine protein
phosphatase 2A 57 kDa regulatory subunit B' iota
iso,91.98,0,B56,Protein phosphatase 2A, regulatory B subunit, B56;
SERINE/THREONINE PROTEIN PHOSPHATASE 2A (PP2A,CUFF.18214.1
(491 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC68586 similar to UniRef100_A7P5G8 Cluster: Chromosome... 98 6e-20
gnl|LJGI|FS324376 homologue to UniRef100_Q8LF36 Cluster: Serine/... 84 9e-16
gnl|LJGI|BW614928 similar to UniRef100_A7PEW0 Cluster: Chromosom... 78 6e-14
gnl|LJGI|TC82284 60 1e-08
>gnl|LJGI|TC68586 similar to UniRef100_A7P5G8 Cluster: Chromosome chr4 scaffold_6,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr4 scaffold_6, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (46%)
Length = 916
Score = 97.6 bits (49), Expect = 6e-20
Identities = 64/69 (92%)
Strand = Plus / Plus
Query: 410 ttagcgggttcgctttgcccttgaaagaggaacacaagatcttcttgtggagagttttga 469
|||| ||||| ||||| |||||||||||||| ||||| ||||||||||||||||||||||
Sbjct: 1 ttagtgggtttgctttacccttgaaagaggagcacaaaatcttcttgtggagagttttga 60
Query: 470 tccccttgc 478
|||||||||
Sbjct: 61 tccccttgc 69
>gnl|LJGI|FS324376 homologue to UniRef100_Q8LF36 Cluster: Serine/threonine protein
phosphatase 2A 57 kDa regulatory subunit B' theta
isoform; n=2;, partial (2%)
Length = 791
Score = 83.8 bits (42), Expect = 9e-16
Identities = 48/50 (96%)
Strand = Plus / Plus
Query: 331 tatgtgttttataggtttgtgtttgagactgagaaacacaatgggattgc 380
|||||||| ||||||||||||||||||| |||||||||||||||||||||
Sbjct: 33 tatgtgttatataggtttgtgtttgagattgagaaacacaatgggattgc 82
>gnl|LJGI|BW614928 similar to UniRef100_A7PEW0 Cluster: Chromosome chr11 scaffold_13,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr11 scaffold_13, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (30%)
Length = 458
Score = 77.8 bits (39), Expect = 6e-14
Identities = 186/235 (79%)
Strand = Plus / Plus
Query: 226 tttgattcggaggatcctagggaaagggattgtttgaaaacaattctgcataggctttat 285
|||||||| |||| ||||| ||||| ||||| |||||||||||||||||||| | |||
Sbjct: 24 tttgattcttaggaccctagagaaagagattgcttgaaaacaattctgcatagaatctat 83
Query: 286 gggaagttcatggtgcatagaccctacattcgaaaatctatgaactatgtgttttatagg 345
|||||||||||||| || || || | ||| || |||||| | | | | | | || ||
Sbjct: 84 gggaagttcatggttcacaggcctttcatgcggaaatctgttagcaacatcatctaccgg 143
Query: 346 tttgtgtttgagactgagaaacacaatgggattgctgagttgttggagattttcgggagc 405
||||| || |||||| || || || || ||||||||||||||||||||||| |||||
Sbjct: 144 tttgttttcgagactcagcggcataacggaattgctgagttgttggagatttttgggagt 203
Query: 406 gtaattagcgggttcgctttgcccttgaaagaggaacacaagatcttcttgtgga 460
|| ||||| ||||| || ||||| ||||| || || ||||| || || |||||||
Sbjct: 204 gttattagtgggtttgccttgccattgaaggaagagcacaaaatatttttgtgga 258
>gnl|LJGI|TC82284
Length = 520
Score = 60.0 bits (30), Expect = 1e-08
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 343 aggtttgtgtttgagactgagaaacacaatgggattgc 380
|||||||||||||||| |||||||||| ||||||||||
Sbjct: 75 aggtttgtgtttgagaatgagaaacaccatgggattgc 112