Miyakogusa Predicted Gene

Lj0g3v0274529.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj0g3v0274529.1 Non Chatacterized Hit- tr|I1KXS3|I1KXS3_SOYBN
Uncharacterized protein OS=Glycine max PE=4
SV=1,82.72,0,RCC1_3,Regulator of chromosome condensation, RCC1;
ZF_FYVE,Zinc finger, FYVE-related; RCC1_2,Regulat,CUFF.18188.1
         (2613 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|AV424101 weakly similar to UniRef100_A7QEG2 Cluster: Ch...   266   6e-70
gnl|LJGI|TC81682 similar to UniRef100_A7PQZ5 Cluster: Chromosome...    60   7e-08

>gnl|LJGI|AV424101 weakly similar to UniRef100_A7QEG2 Cluster: Chromosome chr1
            scaffold_84, whole genome shotgun sequence; n=1; Vitis
            vinifera|Rep: Chromosome chr1 scaffold_84, whole genome
            shotgun sequence - Vitis vinifera (Grape), partial (5%)
          Length = 235

 Score =  266 bits (134), Expect = 6e-70
 Identities = 134/134 (100%)
 Strand = Plus / Plus

                                                                        
Query: 2395 agaatatcttgtcaatcaacgtctccagtttcatcaaagtcaagcccacgtcaatcttat 2454
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3    agaatatcttgtcaatcaacgtctccagtttcatcaaagtcaagcccacgtcaatcttat 62

                                                                        
Query: 2455 gaagatatacatgatgatttaaagcacagaaatgatatgctaaatcaagaagttttaagt 2514
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63   gaagatatacatgatgatttaaagcacagaaatgatatgctaaatcaagaagttttaagt 122

                          
Query: 2515 ttaagggcacaggt 2528
            ||||||||||||||
Sbjct: 123  ttaagggcacaggt 136


>gnl|LJGI|TC81682 similar to UniRef100_A7PQZ5 Cluster: Chromosome chr6 scaffold_25,
            whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
            Chromosome chr6 scaffold_25, whole genome shotgun
            sequence - Vitis vinifera (Grape), partial (37%)
          Length = 1246

 Score = 60.0 bits (30), Expect = 7e-08
 Identities = 45/50 (90%)
 Strand = Plus / Plus

                                                              
Query: 1957 ccatttaatttcagaaggaaacgtcataattgttacaactgtggacttgt 2006
            ||||||||||||| ||||||||| || |||||||| || |||||||||||
Sbjct: 455  ccatttaatttcaaaaggaaacgccacaattgttataattgtggacttgt 504