Miyakogusa Predicted Gene
- Lj0g3v0260549.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0260549.1 Non Chatacterized Hit- tr|B4FD01|B4FD01_MAIZE
Uncharacterized protein OS=Zea mays PE=2 SV=1,34.68,1e-18,no
description,Double-stranded RNA-binding-like; Double-stranded RNA
binding motif,Double-stranded R,CUFF.17180.1
(183 letters)
Database: Glyma1.pep
75,778 sequences; 25,431,882 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Glyma14g07600.1 137 8e-33
Glyma04g10230.1 92 2e-19
Glyma06g10200.2 91 5e-19
Glyma06g10200.1 88 5e-18
Glyma11g33830.1 87 1e-17
Glyma11g20530.1 86 3e-17
Glyma12g08070.1 85 5e-17
Glyma12g29420.1 80 1e-15
Glyma13g40070.1 79 2e-15
Glyma05g10870.1 77 8e-15
Glyma06g34600.1 76 2e-14
Glyma19g42970.1 74 7e-14
Glyma18g50130.1 67 1e-11
Glyma02g41350.1 60 1e-09
Glyma08g42580.1 58 5e-09
Glyma09g25990.1 54 9e-08
>Glyma14g07600.1
Length = 459
Score = 137 bits (344), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 78/173 (45%), Positives = 111/173 (64%), Gaps = 7/173 (4%)
Query: 1 MHKNQLQEHVQKCGWPLPVYEIHNEGFAHAPKFRSTLWVNGKEYKSRLTYPHKKDAEQDA 60
M+KN+LQE K G PVY+ NEG H+PKFRST+WV Y S+ T+ HKK AE +A
Sbjct: 26 MYKNRLQEFTSKSGINFPVYQTINEGQDHSPKFRSTVWVADMGYTSQSTFSHKKAAEHEA 85
Query: 61 AELALKSLVSNENKKNEEHCKILPDLMQ-SKSVLYEYAVKMNLKSPQYRTTQQ--GQLHP 117
A LAL+S++ + +E ++ + SKS++ EYA K++++ P Y T QQ G + P
Sbjct: 86 ARLALESIL---KRTRDEGLSLVNQISPFSKSIMNEYADKLHVEQPTYNTDQQQLGGVLP 142
Query: 118 VYVSTLLFNGESYPGKVGKSKKEAEQLVAFVAIESLLESSSCG-YLHRIIKSK 169
+++++L+FNG SY G ++KKEAEQ A AI S++ SS G L IIKSK
Sbjct: 143 IFITSLVFNGTSYTGDPARTKKEAEQSAAKAAILSIMGDSSSGTVLVEIIKSK 195
>Glyma04g10230.1
Length = 359
Score = 92.4 bits (228), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 63/161 (39%), Positives = 90/161 (55%), Gaps = 5/161 (3%)
Query: 1 MHKNQLQEHVQKCGWPLPVYEIHNEGFAHAPKFRSTLWVNGKEYKSRLTYPHKKDAEQDA 60
+ K++LQE+ QK G P PVYE EG +H P FRST+ VN Y S + ++K AEQ A
Sbjct: 15 VFKSRLQEYAQKAGLPTPVYETIKEGPSHEPSFRSTVIVNDVRYDSLPGFFNRKAAEQSA 74
Query: 61 AELALKSLVSNENKKNEEHCKILPDLMQSKSVLYEYAVKMNLKSPQYRTTQQ---GQLHP 117
AE+AL LV + N N+ + + + K++L EYA KMN P Y+ + G+
Sbjct: 75 AEVALVELVKS-NAVNQSITQPVHETGLCKNLLQEYAQKMNYAMPMYQCKKDETPGRAS- 132
Query: 118 VYVSTLLFNGESYPGKVGKSKKEAEQLVAFVAIESLLESSS 158
V+ T+ G Y G K+KKEAE A A+ ++ S+S
Sbjct: 133 VFSCTVDIGGILYIGGAAKTKKEAEIKAARTALLAIQSSAS 173
>Glyma06g10200.2
Length = 359
Score = 91.3 bits (225), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 62/161 (38%), Positives = 90/161 (55%), Gaps = 5/161 (3%)
Query: 1 MHKNQLQEHVQKCGWPLPVYEIHNEGFAHAPKFRSTLWVNGKEYKSRLTYPHKKDAEQDA 60
+ K++LQE+ QK G P PVYE EG +H P FRST+ VN Y S + ++K AEQ A
Sbjct: 15 VFKSRLQEYAQKAGLPTPVYETIKEGPSHEPSFRSTVIVNDVRYDSLPGFFNRKAAEQSA 74
Query: 61 AELALKSLVSNENKKNEEHCKILPDLMQSKSVLYEYAVKMNLKSPQYRTTQQ---GQLHP 117
AE+AL L+ + N N+ + + + K++L EYA KMN P Y+ + G+
Sbjct: 75 AEVALVELIKS-NLVNQSITQPVHETGLCKNLLQEYAQKMNYAMPMYQCKKDETPGRAS- 132
Query: 118 VYVSTLLFNGESYPGKVGKSKKEAEQLVAFVAIESLLESSS 158
V+ T+ G Y G K+KKEAE A A+ ++ S+S
Sbjct: 133 VFSCTVDIGGILYIGGAAKTKKEAEIKAARTALLAIQSSAS 173
>Glyma06g10200.1
Length = 363
Score = 88.2 bits (217), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 61/164 (37%), Positives = 87/164 (53%), Gaps = 7/164 (4%)
Query: 1 MHKNQLQEHVQKCGWPLPVYEIHNEGFAHAPKFRSTLWVNGKEYKSRLTYPHKKDAEQDA 60
+ K++LQE+ QK G P PVYE EG +H P FRST+ VN Y S + ++K AEQ A
Sbjct: 15 VFKSRLQEYAQKAGLPTPVYETIKEGPSHEPSFRSTVIVNDVRYDSLPGFFNRKAAEQSA 74
Query: 61 AELALKSLVSN---ENKKNEEHCKILPDLMQSKSVLYEYAVKMNLKSPQYRTTQQ---GQ 114
AE+AL L+ + + C + K++L EYA KMN P Y+ + G+
Sbjct: 75 AEVALVELIKSNLVNQSITQPVCFFQHETGLCKNLLQEYAQKMNYAMPMYQCKKDETPGR 134
Query: 115 LHPVYVSTLLFNGESYPGKVGKSKKEAEQLVAFVAIESLLESSS 158
V+ T+ G Y G K+KKEAE A A+ ++ S+S
Sbjct: 135 AS-VFSCTVDIGGILYIGGAAKTKKEAEIKAARTALLAIQSSAS 177
>Glyma11g33830.1
Length = 357
Score = 86.7 bits (213), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 54/133 (40%), Positives = 79/133 (59%), Gaps = 9/133 (6%)
Query: 44 YKSRL-TYPHKKD------AEQDAAELALKSLVSNENKKNEEHCKILPDLMQSKSVLYEY 96
YK+RL ++ K + AE D A +AL++L + K EE + SKS+L+EY
Sbjct: 53 YKTRLQSFTQKCNISLPIAAEADVARMALENL--HVKFKTEERPVTHENTTLSKSILHEY 110
Query: 97 AVKMNLKSPQYRTTQQGQLHPVYVSTLLFNGESYPGKVGKSKKEAEQLVAFVAIESLLES 156
A K+ ++ P Y T Q L P++VS++ F G +Y G +SKKEAEQL A AI S+L+
Sbjct: 111 AAKLKVEKPAYNTVQLEGLLPLFVSSMTFQGTTYVGDAARSKKEAEQLAARNAITSILDG 170
Query: 157 SSCGYLHRIIKSK 169
++ G L+ IKSK
Sbjct: 171 ATSGLLYETIKSK 183
>Glyma11g20530.1
Length = 411
Score = 85.5 bits (210), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 58/154 (37%), Positives = 85/154 (55%), Gaps = 2/154 (1%)
Query: 1 MHKNQLQEHVQKCGWPLPVYEIHNEGFAHAPKFRSTLWVNGKEYKSRLTYPHKKDAEQDA 60
M+KNQLQE Q+ + LP Y EG HAP+F++T+ NG+ ++S + AE A
Sbjct: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
Query: 61 AELALKSLVSNENKKNEEHCKILPDLMQSKSVLYEYAVKMNLKSPQYRTTQQGQLH-PVY 119
AE+AL SL SN + +IL + K++L E A ++ PQY T + G H PV+
Sbjct: 61 AEVALNSL-SNRAPSHSLAARILDETGVYKNLLQEIAQRVGAPLPQYFTFRSGLGHLPVF 119
Query: 120 VSTLLFNGESYPGKVGKSKKEAEQLVAFVAIESL 153
T+ G + G+ K+KK+AE+ A A SL
Sbjct: 120 TGTVELAGIMFTGEPAKNKKQAEKNAAMAAWSSL 153
>Glyma12g08070.1
Length = 401
Score = 84.7 bits (208), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 58/154 (37%), Positives = 85/154 (55%), Gaps = 2/154 (1%)
Query: 1 MHKNQLQEHVQKCGWPLPVYEIHNEGFAHAPKFRSTLWVNGKEYKSRLTYPHKKDAEQDA 60
M+KNQLQE Q+ + LP Y EG HAP+F++T+ NG+ ++S + AE A
Sbjct: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
Query: 61 AELALKSLVSNENKKNEEHCKILPDLMQSKSVLYEYAVKMNLKSPQYRTTQQGQLH-PVY 119
AE+AL SL SN + +IL + K++L E A ++ PQY T + G H PV+
Sbjct: 61 AEVALNSL-SNRAPSHSLAARILDETGVYKNLLQEIAQRVGAPLPQYFTFRSGLGHLPVF 119
Query: 120 VSTLLFNGESYPGKVGKSKKEAEQLVAFVAIESL 153
T+ G + G+ K+KK+AE+ A A SL
Sbjct: 120 TGTVELAGIMFTGEPAKNKKQAEKNAAMAAWSSL 153
>Glyma12g29420.1
Length = 411
Score = 80.1 bits (196), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 55/154 (35%), Positives = 84/154 (54%), Gaps = 2/154 (1%)
Query: 1 MHKNQLQEHVQKCGWPLPVYEIHNEGFAHAPKFRSTLWVNGKEYKSRLTYPHKKDAEQDA 60
M+KNQLQE Q+ + LP Y EG HAP+F++T+ NG+ ++S + AE A
Sbjct: 1 MYKNQLQELAQRSCFNLPSYACIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
Query: 61 AELALKSLVSNENKKNEEHCKILPDLMQSKSVLYEYAVKMNLKSPQYRTTQQGQLH-PVY 119
AE+AL SL S+ + KIL + K++L E A ++ P Y T + G H PV+
Sbjct: 61 AEVALNSL-SHRGPSHSLAAKILDETGVYKNLLQEIAQRVGAPLPHYTTYRSGLGHLPVF 119
Query: 120 VSTLLFNGESYPGKVGKSKKEAEQLVAFVAIESL 153
+ G ++ G+ K+KK+AE+ A A +L
Sbjct: 120 TGIVELAGITFTGEPAKNKKQAEKNAAMAAWSAL 153
>Glyma13g40070.1
Length = 479
Score = 79.3 bits (194), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/154 (35%), Positives = 83/154 (53%), Gaps = 2/154 (1%)
Query: 1 MHKNQLQEHVQKCGWPLPVYEIHNEGFAHAPKFRSTLWVNGKEYKSRLTYPHKKDAEQDA 60
M+KNQLQE Q+ + LP Y EG HAP+F++T+ NG+ +++ + AE A
Sbjct: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFETPHYCSTLRQAEHSA 60
Query: 61 AELALKSLVSNENKKNEEHCKILPDLMQSKSVLYEYAVKMNLKSPQYRTTQQGQLH-PVY 119
AE AL SL S+ + KIL + K++L E A ++ P Y T + G H PV+
Sbjct: 61 AEAALNSL-SHRGPSHSLAAKILDETGVYKNLLQEIAQRVGAPLPHYTTYRSGLGHLPVF 119
Query: 120 VSTLLFNGESYPGKVGKSKKEAEQLVAFVAIESL 153
+ G ++ G+ K+KK+AE+ A A +L
Sbjct: 120 TGIVELAGITFTGEPAKNKKQAEKNAAMAAWSAL 153
>Glyma05g10870.1
Length = 140
Score = 77.4 bits (189), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 52/147 (35%), Positives = 75/147 (51%), Gaps = 9/147 (6%)
Query: 1 MHKNQLQEHVQKCGWPLPVYEIHNEGFAHAPKFRSTLWVNGKEYKSRLTYPHKKDAEQDA 60
M+K +LQE Q+ W LP Y+ EG H P+F ST+ VNG + + K A+ DA
Sbjct: 1 MYKTRLQELCQRRSWTLPTYDNSREGPDHNPRFTSTVNVNGVSFHTPSPTRSAKQAQNDA 60
Query: 61 AELALKSLVSNENKKNEEHCKILPDLMQSKSVLYEYAVKMNLKSPQYRTTQQGQLH-PVY 119
A LA L + + H + +L+Q E A K + P Y T + G+ H P++
Sbjct: 61 AMLAF--LHFSPPSPSTGHVGLYKNLLQ------ELAQKEGFRLPIYNTNKSGEAHMPIF 112
Query: 120 VSTLLFNGESYPGKVGKSKKEAEQLVA 146
VS + GE + G+ KSKK+AE A
Sbjct: 113 VSQVEVEGELFTGEEAKSKKQAEMSAA 139
>Glyma06g34600.1
Length = 150
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 82/150 (54%), Gaps = 2/150 (1%)
Query: 1 MHKNQLQEHVQKCGWPLPVYEIHNEGFAHAPKFRSTLWVNGKEYKSRLTYPHKKDAEQDA 60
M+KNQLQE Q+ + LP Y EG HAP+F++T+ NG+ +++ + AE A
Sbjct: 1 MYKNQLQELAQRSCFNLPSYMSIREGPNHAPRFKATIKFNGEIFETPHYCSTLRQAEHSA 60
Query: 61 AELALKSLVSNENKKNEEHCKILPDLMQSKSVLYEYAVKMNLKSPQYRTTQQGQLH-PVY 119
AE+ L SL S+ + KIL + K+++ E A ++ P Y T + G H P++
Sbjct: 61 AEVPLNSL-SHRGPSHSLATKILDETGVYKNLVQEIAQRVGAPLPHYITYRSGLGHLPIF 119
Query: 120 VSTLLFNGESYPGKVGKSKKEAEQLVAFVA 149
+ + G ++ G+ K+KK+AE+ A A
Sbjct: 120 IRIVELTGITFTGEPAKNKKQAEKNAAMAA 149
>Glyma19g42970.1
Length = 527
Score = 74.3 bits (181), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 47/154 (30%), Positives = 80/154 (51%), Gaps = 2/154 (1%)
Query: 1 MHKNQLQEHVQKCGWPLPVYEIHNEGFAHAPKFRSTLWVNGKEYKSRLTYPHKKDAEQDA 60
M+KN+LQE Q+ + LP Y EG HAP+F++T+ NG+ ++S + AE A
Sbjct: 1 MYKNRLQELAQRSCFNLPAYSCIREGPDHAPRFKATVNFNGETFESPTFCSTLRQAEHAA 60
Query: 61 AELALKSLVSNENKKNEEHCKILPDLMQSKSVLYEYAVKMNLKSPQYRTTQQGQLH-PVY 119
AE+AL + ++ ++L + K++L E A + L P Y T + G H P +
Sbjct: 61 AEVALNT-IAKRGPSGALAARVLDETGVYKNLLQETAHRAGLNLPVYTTIRSGPGHGPNF 119
Query: 120 VSTLLFNGESYPGKVGKSKKEAEQLVAFVAIESL 153
++ G + G ++KK+A++ A A +L
Sbjct: 120 SCSVEIAGMHFTGDPSRTKKQAQKNAAMAAWSAL 153
>Glyma18g50130.1
Length = 90
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 32/67 (47%), Positives = 43/67 (64%)
Query: 2 HKNQLQEHVQKCGWPLPVYEIHNEGFAHAPKFRSTLWVNGKEYKSRLTYPHKKDAEQDAA 61
+K +LQ QKC LP+Y NEG H PKFRST+WV+G +Y S T+ + AE D A
Sbjct: 10 YKTRLQSFTQKCNISLPMYINVNEGRQHDPKFRSTVWVDGMKYTSPNTFSRLRAAEADVA 69
Query: 62 ELALKSL 68
+AL++L
Sbjct: 70 RMALENL 76
>Glyma02g41350.1
Length = 246
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/84 (45%), Positives = 55/84 (65%), Gaps = 4/84 (4%)
Query: 89 SKSVLYEYAVKMNLKSPQYRTTQQ--GQLHPVYVSTLLFNGESYPGKVGKSKKEAEQLVA 146
SKS++ EYA K++++ P Y T Q+ G + V+ ++L+FNG SY G ++KKEAEQ A
Sbjct: 40 SKSIMNEYADKLHVQ-PTYDTVQEQLGGVLRVFKTSLVFNGTSYTGDPARTKKEAEQSAA 98
Query: 147 FVAIESLLESSSCG-YLHRIIKSK 169
AI S++ S+ G L IIKSK
Sbjct: 99 KAAILSIMGDSTSGTTLIEIIKSK 122
>Glyma08g42580.1
Length = 319
Score = 58.2 bits (139), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 52/166 (31%), Positives = 74/166 (44%), Gaps = 31/166 (18%)
Query: 3 KNQLQEHVQKCGWPLPVYEIH-------NEGFAHAPKFRSTLWVNGKEYKSRLTYPHKKD 55
KNQ Q + QK PV+ NE +P F +T+ K+
Sbjct: 77 KNQPQNNAQKNNLDPPVFTCKTEDLPPTNEQSVESPDFFNTI----------------KE 120
Query: 56 AEQDAAELALKSLVSNENKKNEEHCKILPDLMQSKSVLYEYAVKMNLKSPQYRTTQQGQL 115
+Q AA+L L SL + N E IL D K+ L + + + P Y+T Q G
Sbjct: 121 VDQAAAKLDLMSLSPD----NFEKASILGDSGSFKTSLLRLSERQDFHKPTYKTMQAGSP 176
Query: 116 H-PVYVSTLLFNGESYPGKVGKSKKEAEQLVAFVAIESLLESSSCG 160
H P + ST+ G + GK G+SKK+AE+ A +A +L E CG
Sbjct: 177 HMPTFFSTVEVEGVEFHGKGGRSKKQAEEDAAKIAYIALKE---CG 219
>Glyma09g25990.1
Length = 68
Score = 53.9 bits (128), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 38/63 (60%)
Query: 6 LQEHVQKCGWPLPVYEIHNEGFAHAPKFRSTLWVNGKEYKSRLTYPHKKDAEQDAAELAL 65
LQE+ K G LP+Y+ +EG H +FRS + V G Y S+ + KK AEQ+AA LAL
Sbjct: 2 LQEYCHKRGIQLPLYQTWSEGQQHETRFRSAVSVAGNIYTSQCVFSKKKLAEQEAARLAL 61
Query: 66 KSL 68
L
Sbjct: 62 LGL 64