Miyakogusa Predicted Gene

Lj0g3v0260549.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0260549.1 Non Chatacterized Hit- tr|B4FD01|B4FD01_MAIZE
Uncharacterized protein OS=Zea mays PE=2 SV=1,34.68,1e-18,no
description,Double-stranded RNA-binding-like; Double-stranded RNA
binding motif,Double-stranded R,CUFF.17180.1
         (183 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G28380.1 | Symbols: DRB2 | dsRNA-binding protein 2 | chr2:121...    87   9e-18
AT5G41070.1 | Symbols: DRB5 | dsRNA-binding protein 5 | chr5:164...    82   3e-16
AT3G26932.2 | Symbols: DRB3 | dsRNA-binding protein 3 | chr3:993...    81   4e-16
AT3G26932.1 | Symbols: DRB3 | dsRNA-binding protein 3 | chr3:993...    81   4e-16
AT1G09700.1 | Symbols: HYL1, DRB1 | dsRNA-binding domain-like su...    78   3e-15
AT3G62800.2 | Symbols: DRB4 | double-stranded-RNA-binding protei...    71   4e-13
AT3G62800.1 | Symbols: DRB4 | double-stranded-RNA-binding protei...    71   4e-13
AT3G62800.3 | Symbols:  | double-stranded-RNA-binding protein 4 ...    71   4e-13

>AT2G28380.1 | Symbols: DRB2 | dsRNA-binding protein 2 |
           chr2:12134098-12135915 REVERSE LENGTH=434
          Length = 434

 Score = 86.7 bits (213), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 56/154 (36%), Positives = 85/154 (55%), Gaps = 2/154 (1%)

Query: 1   MHKNQLQEHVQKCGWPLPVYEIHNEGFAHAPKFRSTLWVNGKEYKSRLTYPHKKDAEQDA 60
           M+KNQLQE  Q+  + LP Y    EG  HAP+F++T+  NG+ ++S       + AE  A
Sbjct: 1   MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPQYCSTLRQAEHSA 60

Query: 61  AELALKSLVSNENKKNEEHCKILPDLMQSKSVLYEYAVKMNLKSPQYRTTQQGQLH-PVY 119
           AE+AL +L SN    +    +IL +    K++L E A ++    P+Y T + G  H PV+
Sbjct: 61  AEVALNAL-SNRGPSHSLAARILDETGVYKNLLQEIAQRVGAPLPRYTTFRSGLGHQPVF 119

Query: 120 VSTLLFNGESYPGKVGKSKKEAEQLVAFVAIESL 153
             T+   G ++ G   K+KK+AE+  A  A  SL
Sbjct: 120 TGTVELAGITFTGDPAKNKKQAEKNAAMAAWSSL 153


>AT5G41070.1 | Symbols: DRB5 | dsRNA-binding protein 5 |
           chr5:16438547-16439916 FORWARD LENGTH=393
          Length = 393

 Score = 81.6 bits (200), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 56/159 (35%), Positives = 86/159 (54%), Gaps = 2/159 (1%)

Query: 1   MHKNQLQEHVQKCGWPLPVYEIHNEGFAHAPKFRSTLWVNGKEYKSRLTYPHKKDAEQDA 60
           M+KNQLQE  Q+  + LP Y    EG  HAP+F++++  NG+ ++S       + AE  A
Sbjct: 1   MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPTYCSTLRQAEHAA 60

Query: 61  AELALKSLVSNENKKNEEHCKILPDLMQSKSVLYEYAVKMNLKSPQYRTTQQGQLH-PVY 119
           AE++L  L S    K+    KIL +    K++L E A +  L  P Y + + G  H P +
Sbjct: 61  AEVSLNVLSSRVPSKSLT-AKILDETGIYKNLLQETAHRAGLDLPMYTSVRSGSCHFPGF 119

Query: 120 VSTLLFNGESYPGKVGKSKKEAEQLVAFVAIESLLESSS 158
             T+   G ++ G+  K+KK+AE+  A  A  SL + SS
Sbjct: 120 SCTVELAGMTFTGESAKTKKQAEKNAAIAAWSSLKKMSS 158


>AT3G26932.2 | Symbols: DRB3 | dsRNA-binding protein 3 |
           chr3:9930460-9931714 REVERSE LENGTH=359
          Length = 359

 Score = 81.3 bits (199), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 54/154 (35%), Positives = 84/154 (54%), Gaps = 2/154 (1%)

Query: 1   MHKNQLQEHVQKCGWPLPVYEIHNEGFAHAPKFRSTLWVNGKEYKSRLTYPHKKDAEQDA 60
           M+KNQLQE  Q+  + LP Y    EG  HAP+F++++  NG+ ++S       + AE  A
Sbjct: 1   MYKNQLQELAQRSCFSLPSYTCTREGPDHAPRFKASVNFNGEIFESPTYCSTLRQAEHSA 60

Query: 61  AELALKSLVSNENKKNEEHCKILPDLMQSKSVLYEYAVKMNLKSPQYRTTQQGQLH-PVY 119
           AE+AL +L S    K+    ++L +    K++L E A +  L  P Y + + G  H P +
Sbjct: 61  AEVALSALSSKGPSKSLT-ARVLDETGIYKNLLQETAHRAGLDLPVYTSVRSGPGHIPTF 119

Query: 120 VSTLLFNGESYPGKVGKSKKEAEQLVAFVAIESL 153
             T+   G S+ G+  K+KK+AE+  A  A  SL
Sbjct: 120 SCTVELAGMSFNGESAKTKKQAEKNAAIAAWFSL 153


>AT3G26932.1 | Symbols: DRB3 | dsRNA-binding protein 3 |
           chr3:9930460-9931714 REVERSE LENGTH=359
          Length = 359

 Score = 81.3 bits (199), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 54/154 (35%), Positives = 84/154 (54%), Gaps = 2/154 (1%)

Query: 1   MHKNQLQEHVQKCGWPLPVYEIHNEGFAHAPKFRSTLWVNGKEYKSRLTYPHKKDAEQDA 60
           M+KNQLQE  Q+  + LP Y    EG  HAP+F++++  NG+ ++S       + AE  A
Sbjct: 1   MYKNQLQELAQRSCFSLPSYTCTREGPDHAPRFKASVNFNGEIFESPTYCSTLRQAEHSA 60

Query: 61  AELALKSLVSNENKKNEEHCKILPDLMQSKSVLYEYAVKMNLKSPQYRTTQQGQLH-PVY 119
           AE+AL +L S    K+    ++L +    K++L E A +  L  P Y + + G  H P +
Sbjct: 61  AEVALSALSSKGPSKSLT-ARVLDETGIYKNLLQETAHRAGLDLPVYTSVRSGPGHIPTF 119

Query: 120 VSTLLFNGESYPGKVGKSKKEAEQLVAFVAIESL 153
             T+   G S+ G+  K+KK+AE+  A  A  SL
Sbjct: 120 SCTVELAGMSFNGESAKTKKQAEKNAAIAAWFSL 153


>AT1G09700.1 | Symbols: HYL1, DRB1 | dsRNA-binding domain-like
           superfamily protein | chr1:3137960-3140118 REVERSE
           LENGTH=419
          Length = 419

 Score = 78.2 bits (191), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 59/160 (36%), Positives = 86/160 (53%), Gaps = 12/160 (7%)

Query: 1   MHKNQLQEHVQKCGWPLPVYEIHNEGFAHAPKFRSTLWVNGKEYKSRLTYPHKKDAEQDA 60
           + K++LQE+ QK   P PVYEI  EG +H   F+ST+ ++G  Y S   + ++K AEQ A
Sbjct: 15  VFKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSLPGFFNRKAAEQSA 74

Query: 61  AELALKSLVSNENKKNE-EHCKILP--DLMQSKSVLYEYAVKMNLKSPQYRTTQQGQLHP 117
           AE+AL+ L     K +E   C   P  +    K++L EYA KMN   P Y+  +   L  
Sbjct: 75  AEVALRELA----KSSELSQCVSQPVHETGLCKNLLQEYAQKMNYAIPLYQCQKVETLGR 130

Query: 118 V--YVSTLLFNGESYPGKVGKSKKEAE---QLVAFVAIES 152
           V  +  T+   G  Y G   ++KK+AE      A +AI+S
Sbjct: 131 VTQFTCTVEIGGIKYTGAATRTKKDAEISAGRTALLAIQS 170


>AT3G62800.2 | Symbols: DRB4 | double-stranded-RNA-binding protein 4
           | chr3:23225749-23227163 REVERSE LENGTH=355
          Length = 355

 Score = 71.2 bits (173), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 53/159 (33%), Positives = 80/159 (50%), Gaps = 10/159 (6%)

Query: 1   MHKNQLQEHVQKCGWPLPVYEIHNEGFAHAPKFRSTLWVNGKEYKSRLTYPHKKDAEQDA 60
           ++K QLQ +  +    LPVY    EG  HAP+FR  +   G+ ++S   +P  K AE  A
Sbjct: 4   VYKGQLQAYALQHNLELPVYANEREGPPHAPRFRCNVTFCGQTFQSSEFFPTLKSAEHAA 63

Query: 61  AELALKSLVSNENKKNEEHCKILPDLMQSKSVLYEYAVKMNLKSPQYRTTQQGQLH-PVY 119
           A++A+ SL      ++ E   +       K++L E A K +   P Y T   G  H P +
Sbjct: 64  AKIAVASLT----PQSPEGIDV-----AYKNLLQEIAQKESSLLPFYATATSGPSHAPTF 114

Query: 120 VSTLLFNGESYPGKVGKSKKEAEQLVAFVAIESLLESSS 158
            ST+ F G+ + G+  K+KK AE   A VA  S+   +S
Sbjct: 115 TSTVEFAGKVFSGEEAKTKKLAEMSAAKVAFMSIKNGNS 153


>AT3G62800.1 | Symbols: DRB4 | double-stranded-RNA-binding protein 4
           | chr3:23225749-23227163 REVERSE LENGTH=355
          Length = 355

 Score = 71.2 bits (173), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 53/159 (33%), Positives = 80/159 (50%), Gaps = 10/159 (6%)

Query: 1   MHKNQLQEHVQKCGWPLPVYEIHNEGFAHAPKFRSTLWVNGKEYKSRLTYPHKKDAEQDA 60
           ++K QLQ +  +    LPVY    EG  HAP+FR  +   G+ ++S   +P  K AE  A
Sbjct: 4   VYKGQLQAYALQHNLELPVYANEREGPPHAPRFRCNVTFCGQTFQSSEFFPTLKSAEHAA 63

Query: 61  AELALKSLVSNENKKNEEHCKILPDLMQSKSVLYEYAVKMNLKSPQYRTTQQGQLH-PVY 119
           A++A+ SL      ++ E   +       K++L E A K +   P Y T   G  H P +
Sbjct: 64  AKIAVASLT----PQSPEGIDV-----AYKNLLQEIAQKESSLLPFYATATSGPSHAPTF 114

Query: 120 VSTLLFNGESYPGKVGKSKKEAEQLVAFVAIESLLESSS 158
            ST+ F G+ + G+  K+KK AE   A VA  S+   +S
Sbjct: 115 TSTVEFAGKVFSGEEAKTKKLAEMSAAKVAFMSIKNGNS 153


>AT3G62800.3 | Symbols:  | double-stranded-RNA-binding protein 4 |
           chr3:23225749-23227163 REVERSE LENGTH=329
          Length = 329

 Score = 70.9 bits (172), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 53/159 (33%), Positives = 80/159 (50%), Gaps = 10/159 (6%)

Query: 1   MHKNQLQEHVQKCGWPLPVYEIHNEGFAHAPKFRSTLWVNGKEYKSRLTYPHKKDAEQDA 60
           ++K QLQ +  +    LPVY    EG  HAP+FR  +   G+ ++S   +P  K AE  A
Sbjct: 4   VYKGQLQAYALQHNLELPVYANEREGPPHAPRFRCNVTFCGQTFQSSEFFPTLKSAEHAA 63

Query: 61  AELALKSLVSNENKKNEEHCKILPDLMQSKSVLYEYAVKMNLKSPQYRTTQQGQLH-PVY 119
           A++A+ SL      ++ E   +       K++L E A K +   P Y T   G  H P +
Sbjct: 64  AKIAVASLT----PQSPEGIDVA-----YKNLLQEIAQKESSLLPFYATATSGPSHAPTF 114

Query: 120 VSTLLFNGESYPGKVGKSKKEAEQLVAFVAIESLLESSS 158
            ST+ F G+ + G+  K+KK AE   A VA  S+   +S
Sbjct: 115 TSTVEFAGKVFSGEEAKTKKLAEMSAAKVAFMSIKNGNS 153