Miyakogusa Predicted Gene

Lj0g3v0259899.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0259899.1 tr|A9S9K1|A9S9K1_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_126115,57.69,3e-16,no description,WD40/YVTN
repeat-like-containing domain; seg,NULL; SUBFAMILY NOT NAMED,NULL;
FAMILY N,CUFF.17118.1
         (578 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g099210.1 | transducin/WD-like repeat-protein | HC | chr7:...   769   0.0  
Medtr1g069355.1 | transducin/WD-like repeat-protein | HC | chr1:...   767   0.0  
Medtr1g069355.2 | transducin/WD-like repeat-protein | HC | chr1:...   756   0.0  

>Medtr7g099210.1 | transducin/WD-like repeat-protein | HC |
           chr7:39765251-39759245 | 20130731
          Length = 771

 Score =  769 bits (1987), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 406/619 (65%), Positives = 452/619 (73%), Gaps = 63/619 (10%)

Query: 1   MWHYNNGGEA-FQPVAVLKTRRSLRAVHFHPHAAPYLLTAQVNDLDPSDYSMTEATSLGY 59
           +WHY+  GEA + P+ VLKTRRSLRAVHFHPHAAPYLLTA+VNDLD SD SMTEATS+GY
Sbjct: 175 IWHYDKKGEASYSPIFVLKTRRSLRAVHFHPHAAPYLLTAEVNDLDSSDSSMTEATSIGY 234

Query: 60  LQYPPPVVFVTNVQPRTLIHLSSKPPNMSLRLFM-PSYTADESRVELQHARHGVGSSSMQ 118
           LQYPPP VFVTNV P   + LSS+P N+SL  F+ P YT DESR ELQHA H  GS  +Q
Sbjct: 235 LQYPPPAVFVTNVHPTEHVTLSSEPTNVSLPFFLVPPYTVDESRAELQHASHDAGSGRIQ 294

Query: 119 VEA----------NETEQHDTALSS----SEIPASSQTSAEYNAHTTSPNQMRTGISNLT 164
           +E+          N TEQHDT +S     SEIP +SQ   EY AHT   N M  GI NLT
Sbjct: 295 IESSAVAQFQADTNSTEQHDTTVSPMDTVSEIPTNSQAGTEYPAHTAFSNGMGIGIGNLT 354

Query: 165 MGGMETNETQTEAADVSQHEN-----SANGF------------------HQFFPSRNPSG 201
           M GMET+ET+   A+ SQH N     S NG                   H F  SR+PSG
Sbjct: 355 MDGMETDETR--PAEGSQHRNPTDASSLNGMLHGLSRQTANHGVHPEDGHPFVSSRDPSG 412

Query: 202 WELPFLQGWLMGQSQVGVPSMLHHIGGSRDSFPQQIGPSTMGSNPSTTNVEAAMSSSEMP 261
           WELPFLQGW+MGQSQ G+PSML H G SRD+   QI  S M +   T+N + AM SS M 
Sbjct: 413 WELPFLQGWMMGQSQAGLPSMLPHTGVSRDTLAPQISSSVMANTLPTSNADVAMPSSAMS 472

Query: 262 ATISIPAASMRSGLQNHFSQSHIPVSDSGNLLASVNAPRDGSDSQTIINRIQSEHATSXX 321
            +I+IP +S+RSGL++HFS S  PVS+SGNL AS+N P DGSD QTI++RIQSE ATS  
Sbjct: 473 GSINIPGSSVRSGLRSHFSHSRTPVSESGNLAASINTPHDGSDIQTIMSRIQSELATSV- 531

Query: 322 XXXXXXXRNQPRQDLLRSGAAAAATELPCTVKLKVWPYDIENPCALLRG--CRLVIPHVV 379
                              AAAAATELPCTVKL+VW +DI+NPC+ L    CRL+IPH V
Sbjct: 532 -------------------AAAAATELPCTVKLRVWSHDIKNPCSPLNADRCRLIIPHAV 572

Query: 380 LCSEMGAHFSPCGRFLAACVACMHPHTEGDPGSQNLARQDPGVATSPTRHPISAHQVMYE 439
           LCSEMGAHFSPCGRFLAACVACM PH E DPG Q    Q+ G+ATSPTRHPISAHQVMYE
Sbjct: 573 LCSEMGAHFSPCGRFLAACVACMLPHIEADPGLQTPVHQESGIATSPTRHPISAHQVMYE 632

Query: 440 LRIYSLEEETFGSVLVSRAIRAAHCLTSIQFSPTSEHILLAYGRRHGSLLKSIIIDGETT 499
           LRIYSLEE TFG VL SRAIRAAHCLTSIQFSPTSEHILLAYGRRHGSLLKSI+IDGETT
Sbjct: 633 LRIYSLEEATFGLVLASRAIRAAHCLTSIQFSPTSEHILLAYGRRHGSLLKSIVIDGETT 692

Query: 500 LPIYTVLEVYRVSDMELVRVLPSADDEVNVACFHPFPGGGLVYGTKEGKLRIFQFDRART 559
           LPIYTVLEVYRVSDMELVRVLPSA+DEVNVACFHPFPGGGLVYGTKEGKLRI  +D AR 
Sbjct: 693 LPIYTVLEVYRVSDMELVRVLPSAEDEVNVACFHPFPGGGLVYGTKEGKLRILHYDGARP 752

Query: 560 VNGTGPGYFLAENFIGVGQ 578
           VNGTGP YF  E  +GV Q
Sbjct: 753 VNGTGPSYFPEETIVGVSQ 771


>Medtr1g069355.1 | transducin/WD-like repeat-protein | HC |
           chr1:29967233-29974817 | 20130731
          Length = 743

 Score =  767 bits (1980), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 407/589 (69%), Positives = 439/589 (74%), Gaps = 63/589 (10%)

Query: 1   MWHYNNGGEAFQPVAVLKTRRSLRAVHFHPHAAPYLLTAQVNDLDPSDYSMTEATSLGYL 60
           MWHY N  E   PV VLKTRRSLRAVHFHPH APYLLTAQVNDL+ SD SMTEATS G+L
Sbjct: 207 MWHYKNARELSSPVFVLKTRRSLRAVHFHPHGAPYLLTAQVNDLNSSDCSMTEATSHGHL 266

Query: 61  QYPPPVVFVTNVQPRTLIHLSSKPPNMSLRLFMPSYTADESRVELQHARHGVGSSSMQVE 120
           +YPPP VFVTNV PRT I++SS+PP               SRVELQHA + VG SSMQVE
Sbjct: 267 EYPPPAVFVTNVHPRTQINMSSEPP--------------VSRVELQHASNDVGLSSMQVE 312

Query: 121 ANETEQHDTALSSSEIPASSQTSAEYNAHTTSPNQMRTGISNLTMGGMETNETQTEAADV 180
                Q+ T L +SEIP SSQT AEYNAHTT PNQMR GI+NLTMGG E  ET  E A+ 
Sbjct: 313 -----QYGTRLVNSEIPTSSQTGAEYNAHTTLPNQMRIGINNLTMGGREAYET--EPAEA 365

Query: 181 SQHEN----------SANG-FHQFFPSRNPSGWELPFLQGWLMGQSQVGVPSMLHHIGGS 229
           SQHEN          S +G F Q  PS + +GWELPFLQGWL+GQSQVGVPSML      
Sbjct: 366 SQHENADHVVKRVELSEHGQFPQIVPSPDSNGWELPFLQGWLVGQSQVGVPSML------ 419

Query: 230 RDSFPQQIGPSTMGSNPSTTNVEAAMSSSEMPATISIPAASMRSGLQNHFSQSHIPVSDS 289
               PQQIG  TM SN  TTNVE A+  S MP  ISIPA  ++SGLQN FS S +PV+D 
Sbjct: 420 ----PQQIGSFTMPSNLFTTNVELAVPPSGMPNGISIPAV-LQSGLQNQFSPSRLPVTDF 474

Query: 290 GNLLASVNAPRDGSDSQTIINRIQSEHATSXXXXXXXXXRNQPRQDLLRSGAAAAATELP 349
           GNL+ S+N P DG DSQTIINRIQSE                    L +S A AAATELP
Sbjct: 475 GNLVPSINLPHDGFDSQTIINRIQSE--------------------LAKSVATAAATELP 514

Query: 350 CTVKLKVWPYDIENPCALLRGCRLVIPHVVLCSEMGAHFSPCGRFLAACVACMHPHTEGD 409
           CTV LKVW YD++NPCA L+ CRL IPHVVLCSEMGAHFSPCGRFLAACVACMHPH E D
Sbjct: 515 CTVNLKVWSYDLKNPCAPLQRCRLTIPHVVLCSEMGAHFSPCGRFLAACVACMHPHMEAD 574

Query: 410 PGSQNLARQDPGVATSPTRHPISAHQVMYELRIYSLEEETFGSVLVSRAIRAAHCLTSIQ 469
           PG Q L  Q+PG+ TSPTRHPISAHQVMYELRIYSLEE TFGSVLVSR IRAAHCLTSIQ
Sbjct: 575 PGLQTLVHQEPGLPTSPTRHPISAHQVMYELRIYSLEEATFGSVLVSRPIRAAHCLTSIQ 634

Query: 470 FSPTSEHILLAYGRRHGSLLKSIIIDGETTLPIYTVLEVYRVSDMELVRVLPSADDEVNV 529
           FSPTSEHILLAYGRRH SLLKSI++DGE T  IYTVLEVYRVSDMELVRVL SA+DEVNV
Sbjct: 635 FSPTSEHILLAYGRRHSSLLKSIVLDGEKTSSIYTVLEVYRVSDMELVRVLSSAEDEVNV 694

Query: 530 ACFHPFPGGGLVYGTKEGKLRIFQFDRARTVNGTGPGYFLAENFIGVGQ 578
           ACFHPFPGGGLVYGTKEGKL +FQFDR   VNGTG GYF  EN IGV Q
Sbjct: 695 ACFHPFPGGGLVYGTKEGKLSVFQFDRTCNVNGTGSGYFPEENIIGVNQ 743


>Medtr1g069355.2 | transducin/WD-like repeat-protein | HC |
           chr1:29967264-29974810 | 20130731
          Length = 760

 Score =  756 bits (1952), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 407/606 (67%), Positives = 439/606 (72%), Gaps = 80/606 (13%)

Query: 1   MWHYNNGGEAFQPVAVLKTRRSLRAVHFHPHAAPYLLTAQVNDLDPSDYSMTEATSLGYL 60
           MWHY N  E   PV VLKTRRSLRAVHFHPH APYLLTAQVNDL+ SD SMTEATS G+L
Sbjct: 207 MWHYKNARELSSPVFVLKTRRSLRAVHFHPHGAPYLLTAQVNDLNSSDCSMTEATSHGHL 266

Query: 61  QYPPPVVFVTNVQPRTLIHLSSKPPNMSLRLFMPSYTADESRVELQHARHGVGSSSMQVE 120
           +YPPP VFVTNV PRT I++SS+PP               SRVELQHA + VG SSMQVE
Sbjct: 267 EYPPPAVFVTNVHPRTQINMSSEPP--------------VSRVELQHASNDVGLSSMQVE 312

Query: 121 ANETEQHDTALSSSEIPASSQTSAEYNAHTTSPNQMRTGISNLTMGGMETNETQTEAADV 180
                Q+ T L +SEIP SSQT AEYNAHTT PNQMR GI+NLTMGG E  ET  E A+ 
Sbjct: 313 -----QYGTRLVNSEIPTSSQTGAEYNAHTTLPNQMRIGINNLTMGGREAYET--EPAEA 365

Query: 181 SQHEN----------SANG-FHQFFPSRNPSGWELPFLQGWLMGQSQVGVPSMLHHIGGS 229
           SQHEN          S +G F Q  PS + +GWELPFLQGWL+GQSQVGVPSML      
Sbjct: 366 SQHENADHVVKRVELSEHGQFPQIVPSPDSNGWELPFLQGWLVGQSQVGVPSML------ 419

Query: 230 RDSFPQQIGPSTMGSNPSTTNVEAAMSSSEMPATISIPAASMRSGLQNHFSQSHIPVSDS 289
               PQQIG  TM SN  TTNVE A+  S MP  ISIPA  ++SGLQN FS S +PV+D 
Sbjct: 420 ----PQQIGSFTMPSNLFTTNVELAVPPSGMPNGISIPAV-LQSGLQNQFSPSRLPVTDF 474

Query: 290 GNLLASVNAPRDGSDSQTIINRIQSEHATSXXXXXXXXXRNQPRQDLLRSGAAAAATELP 349
           GNL+ S+N P DG DSQTIINRIQSE                    L +S A AAATELP
Sbjct: 475 GNLVPSINLPHDGFDSQTIINRIQSE--------------------LAKSVATAAATELP 514

Query: 350 CTVKLKVWPYDIENPCALLRGCRLVIPHVVLCSEMGAHFSPCGRFLAACVACMHPHTEGD 409
           CTV LKVW YD++NPCA L+ CRL IPHVVLCSEMGAHFSPCGRFLAACVACMHPH E D
Sbjct: 515 CTVNLKVWSYDLKNPCAPLQRCRLTIPHVVLCSEMGAHFSPCGRFLAACVACMHPHMEAD 574

Query: 410 PGSQNLARQDPGVATSPTRHPISAHQVMYELRIYSLEEETFGSVLVSRAIRAAHCLTSIQ 469
           PG Q L  Q+PG+ TSPTRHPISAHQVMYELRIYSLEE TFGSVLVSR IRAAHCLTSIQ
Sbjct: 575 PGLQTLVHQEPGLPTSPTRHPISAHQVMYELRIYSLEEATFGSVLVSRPIRAAHCLTSIQ 634

Query: 470 -----------------FSPTSEHILLAYGRRHGSLLKSIIIDGETTLPIYTVLEVYRVS 512
                            FSPTSEHILLAYGRRH SLLKSI++DGE T  IYTVLEVYRVS
Sbjct: 635 VLCSLYFLLFFHHNITTFSPTSEHILLAYGRRHSSLLKSIVLDGEKTSSIYTVLEVYRVS 694

Query: 513 DMELVRVLPSADDEVNVACFHPFPGGGLVYGTKEGKLRIFQFDRARTVNGTGPGYFLAEN 572
           DMELVRVL SA+DEVNVACFHPFPGGGLVYGTKEGKL +FQFDR   VNGTG GYF  EN
Sbjct: 695 DMELVRVLSSAEDEVNVACFHPFPGGGLVYGTKEGKLSVFQFDRTCNVNGTGSGYFPEEN 754

Query: 573 FIGVGQ 578
            IGV Q
Sbjct: 755 IIGVNQ 760