Miyakogusa Predicted Gene
- Lj0g3v0259899.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj0g3v0259899.1 tr|A9S9K1|A9S9K1_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_126115,57.69,3e-16,no description,WD40/YVTN
repeat-like-containing domain; seg,NULL; SUBFAMILY NOT NAMED,NULL;
FAMILY N,CUFF.17118.1
(1737 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|BP039137 similar to UniRef100_A7NXM3 Cluster: Chromosom... 583 e-165
gnl|LJGI|TC68576 homologue to UniRef100_A7NXM3 Cluster: Chromoso... 539 e-152
gnl|LJGI|BP069280 weakly similar to UniRef100_A7Q1I1 Cluster: Ch... 159 7e-38
gnl|LJGI|BP064661 similar to UniRef100_A7Q1I1 Cluster: Chromosom... 86 9e-16
>gnl|LJGI|BP039137 similar to UniRef100_A7NXM3 Cluster: Chromosome chr5 scaffold_2,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr5 scaffold_2, whole genome shotgun sequence
- Vitis vinifera (Grape), partial (12%)
Length = 577
Score = 583 bits (294), Expect = e-165
Identities = 300/302 (99%)
Strand = Plus / Plus
Query: 1015 tctggggcggctgcagctgctacagagttgccttgcactgttaagttaaaagtatggcca 1074
|||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 tctgcggctgctgcagctgctacagagttgccttgcactgttaagttaaaagtatggcca 335
Query: 1075 tatgacattgaaaatccttgtgctctgctaagaggatgtcgtctagtcataccacatgtt 1134
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 tatgacattgaaaatccttgtgctctgctaagaggatgtcgtctagtcataccacatgtt 395
Query: 1135 gtcctttgcagtgaaatgggtgcccatttttcaccatgtggtagatttttagctgcctgc 1194
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 gtcctttgcagtgaaatgggtgcccatttttcaccatgtggtagatttttagctgcctgc 455
Query: 1195 gttgcatgtatgcatcctcatacagaaggtgatcccggatcacaaaatcttgcacgccag 1254
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 gttgcatgtatgcatcctcatacagaaggtgatcccggatcacaaaatcttgcacgccag 515
Query: 1255 gaccctggagttgcaacatcgccaactcgacatccgatctcagcgcatcaagtaatgtat 1314
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 gaccctggagttgcaacatcgccaactcgacatccgatctcagcgcatcaagtaatgtat 575
Query: 1315 ga 1316
||
Sbjct: 576 ga 577
Score = 563 bits (284), Expect = e-159
Identities = 284/284 (100%)
Strand = Plus / Plus
Query: 680 gtggtagtcgtgacagctttccacagcagattggtccttccaccatgggatctaatccgt 739
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gtggtagtcgtgacagctttccacagcagattggtccttccaccatgggatctaatccgt 60
Query: 740 ccacaactaatgttgaggcagcaatgtcgtcttcagaaatgcctgccacaatcagcatac 799
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ccacaactaatgttgaggcagcaatgtcgtcttcagaaatgcctgccacaatcagcatac 120
Query: 800 ctgcagcttctatgagatcaggtttacagaatcatttttctcaatcccatatacctgtat 859
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ctgcagcttctatgagatcaggtttacagaatcatttttctcaatcccatatacctgtat 180
Query: 860 ctgactctggcaatcttcttgcttctgttaatgccccacgtgatgggtctgacagccaaa 919
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ctgactctggcaatcttcttgcttctgttaatgccccacgtgatgggtctgacagccaaa 240
Query: 920 ccattataaatcgaatccagtcagaacatgctacgtctgcggct 963
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ccattataaatcgaatccagtcagaacatgctacgtctgcggct 284
>gnl|LJGI|TC68576 homologue to UniRef100_A7NXM3 Cluster: Chromosome chr5 scaffold_2,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr5 scaffold_2, whole genome shotgun sequence
- Vitis vinifera (Grape), partial (24%)
Length = 1152
Score = 539 bits (272), Expect = e-152
Identities = 467/532 (87%)
Strand = Plus / Plus
Query: 1122 cataccacatgttgtcctttgcagtgaaatgggtgcccatttttcaccatgtggtagatt 1181
||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 92 cataccacatgctgtcctctgcagtgaaatgggtgcccatttttcaccatgtggtagatt 151
Query: 1182 tttagctgcctgcgttgcatgtatgcatcctcatacagaaggtgatcccggatcacaaaa 1241
|||||||||||| ||||||||||||| ||||| || ||||| |||||| ||| |||
Sbjct: 152 tttagctgcctgtgttgcatgtatgcttcctcgtatagaagctgatccaggactgcaagc 211
Query: 1242 tcttgcacgccaggaccctggagttgcaacatcgccaactcgacatccgatctcagcgca 1301
|| | || ||| || |||| || ||| || |||||||| ||||| |||||||| ||
Sbjct: 212 tccagtacaccaagagtctggtctttcaaactcaccaactcggcatcctatctcagcaca 271
Query: 1302 tcaagtaatgtatgagctccggatatattcccttgaggaggaaacatttggatcggtgct 1361
||||| ||||| ||||| |||||||||||||||||||||| |||||||||||| |||||
Sbjct: 272 ccaagttatgtacgagctgcggatatattcccttgaggaggcaacatttggatcagtgct 331
Query: 1362 tgtttcacgggcaattcgagctgctcattgtctgacttcaattcagttctcacctacatc 1421
|| |||| | || ||| |||| |||||||||||||||||||||||||| |||||||||||
Sbjct: 332 tgcttcaagagcgattagagcagctcattgtctgacttcaattcagttttcacctacatc 391
Query: 1422 tgagcatatactgcttgcgtatggtcgacgtcatggctctcttcttaaaagcattatcat 1481
|||||| ||||| ||||| ||||||||||||||||| |||||||||||||||||| ||||
Sbjct: 392 tgagcacatacttcttgcctatggtcgacgtcatggttctcttcttaaaagcattgtcat 451
Query: 1482 tgatggagaaacaacattaccaatctatacagtgttagaggtatacagagtgtctgatat 1541
||||||||||||||| ||||| || |||||||| ||||||||||||||||| || |||||
Sbjct: 452 tgatggagaaacaaccttacctatatatacagttttagaggtatacagagtatcggatat 511
Query: 1542 ggaacttgtcagggtgctgcctagtgcagacgatgaggtcaatgtggcatgctttcatcc 1601
||||||||| |||||||| |||||||| || ||||||||||| ||||| |||||||||||
Sbjct: 512 ggaacttgttagggtgcttcctagtgctgaagatgaggtcaacgtggcttgctttcatcc 571
Query: 1602 ttttcctgggggagggcttgtttatggaaccaaggaaggaaagcttaggatc 1653
|||| | |||||||| || |||||||| || |||||||||||||||||||||
Sbjct: 572 ttttgccgggggaggactagtttatgggacaaaggaaggaaagcttaggatc 623
>gnl|LJGI|BP069280 weakly similar to UniRef100_A7Q1I1 Cluster: Chromosome chr7
scaffold_44, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr7 scaffold_44, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (6%)
Length = 444
Score = 159 bits (80), Expect = 7e-38
Identities = 266/328 (81%)
Strand = Plus / Plus
Query: 584 cttcaagaaatccaagtggatgggagttaccttttctgcaaggatggttaatgggtcaaa 643
|||||||| | ||||||||||||||||| |||||| |||||||||||||||||||||||
Sbjct: 114 cttcaagagacccaagtggatgggagttgcctttttggcaaggatggttaatgggtcaaa 173
Query: 644 gccaagttggcgttccctcaatgcttcatcacattggtggtagtcgtgacagctttccac 703
|||||| ||| || ||| ||||||||| |||||| |||| ||||||||||| | | |
Sbjct: 174 gccaagctggtgtccccccaatgcttcctcacatcggtgctagtcgtgacattctatctc 233
Query: 704 agcagattggtccttccaccatgggatctaatccgtccacaactaatgttgaggcagcaa 763
| |||||||| |||| | || || ||| |||| |||||||||| |||| ||
Sbjct: 234 aagagattggttcttctgtaagggcttcgaatttttccagttctaatgttgatgcagtaa 293
Query: 764 tgtcgtcttcagaaatgcctgccacaatcagcatacctgcagcttctatgagatcaggtt 823
| || ||||||| |||||||| || | ||||||||||| | |||||||||||||||| |
Sbjct: 294 tttcatcttcagcaatgcctggcagcaccagcatacctggatcttctatgagatcaggct 353
Query: 824 tacagaatcatttttctcaatcccatatacctgtatctgactctggcaatcttcttgctt 883
||| | || |||||| ||| ||||| ||||||||||||| |||||||||||| |||||
Sbjct: 354 tacggcatagtttttcacaagcccatgtacctgtatctgaatctggcaatcttgctgctt 413
Query: 884 ctgttaatgccccacgtgatgggtctga 911
|||||| | ||||| |||||||||||
Sbjct: 414 ctgttactatcccacaagatgggtctga 441
>gnl|LJGI|BP064661 similar to UniRef100_A7Q1I1 Cluster: Chromosome chr7 scaffold_44,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr7 scaffold_44, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (4%)
Length = 490
Score = 85.7 bits (43), Expect = 9e-16
Identities = 58/63 (92%)
Strand = Plus / Minus
Query: 1591 tgctttcatccttttcctgggggagggcttgtttatggaaccaaggaaggaaagcttagg 1650
||||||||||||||||| |||||||| || ||||||| |||||||||||||||||||||
Sbjct: 489 tgctttcatccttttcccgggggaggactattttatggcaccaaggaaggaaagcttagg 430
Query: 1651 atc 1653
|||
Sbjct: 429 atc 427