Miyakogusa Predicted Gene
- Lj0g3v0259499.2
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0259499.2 Non Chatacterized Hit- tr|K3XE03|K3XE03_SETIT
Uncharacterized protein OS=Setaria italica GN=Si000120,71.43,1e-16,DNA
binding domain with preference for A/T r,AT hook, DNA-binding motif;
AT_hook,AT hook, DNA-bindin,CUFF.17094.2
(358 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G19485.2 | Symbols: | Transducin/WD40 repeat-like superfamil... 174 1e-43
AT1G19485.1 | Symbols: | Transducin/WD40 repeat-like superfamil... 174 1e-43
>AT1G19485.2 | Symbols: | Transducin/WD40 repeat-like superfamily
protein | chr1:6747167-6751443 FORWARD LENGTH=815
Length = 815
Score = 174 bits (440), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 121/358 (33%), Positives = 173/358 (48%), Gaps = 84/358 (23%)
Query: 1 MNVGGSVWALDWCPQIHEEPDCSVKCEFVAVATHPPGSSYHKMGDSLVGRGVVQIWCLLN 60
M+VGGSVWA++WCP++H PD KCEF+AVATHPP S HK+G L+GRG++QIWC++N
Sbjct: 114 MHVGGSVWAMEWCPRVHGNPDAQAKCEFLAVATHPPDSYSHKIGIPLIGRGIIQIWCIIN 173
Query: 61 IREHNEDTSSVTEKRKVRPKKDGSTKDKSSQIKRPRGRPRKNSTVIVVDDTNCETQHILS 120
T K K G DK K+ G+ RK
Sbjct: 174 ----------ATCK-----KDSGQVSDKG---KKLTGKSRK------------------- 196
Query: 121 LEVQFAGKCIEFSAPDGNLENSEEMLPTTHKRRRG-PKKNNATNEKPAPMKRPRGRPKKN 179
Q +G+ E + P K+ RG P+K+ +P K+PRGRP+K
Sbjct: 197 ---QPSGETTETTEP---------------KKPRGRPRKHPVETTEP---KKPRGRPRKK 235
Query: 180 STEVTASDSNCKDQFV-PLAVQFPEDLAEFNSPI-------VAYGNCNDHAAQQCSHTNQ 231
ST + + +V L+V++PE+ +P+ V N+ + Q ++
Sbjct: 236 STAELPVELDDDVLYVEALSVRYPENSVVPATPLRILRETPVTETKVNNEGSGQVLSSDN 295
Query: 232 KHAKKADFAHDSKALSRLNINHMEGRYNEGMSQPLLIQCENETNYQLCSSSELEPPAATC 291
+ K + + + E P++++ Y + P++
Sbjct: 296 ANIKLP-----------VRRKRQKTKSTEESCTPMILE------YSEAVGNVPSKPSSGI 338
Query: 292 SVPDITLPRVVSCLAHNGKVAWDVKWRPLNISEPLCKYRMGYLAVLLGNGSLEVWEVP 349
S + LPRVV CLAHNGKV WD+KWRP + L K+ MGYLAVLLGNGSLEVW+VP
Sbjct: 339 SEDIVALPRVVLCLAHNGKVVWDMKWRPSYAGDSLNKHSMGYLAVLLGNGSLEVWDVP 396
>AT1G19485.1 | Symbols: | Transducin/WD40 repeat-like superfamily
protein | chr1:6747167-6751443 FORWARD LENGTH=815
Length = 815
Score = 174 bits (440), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 121/358 (33%), Positives = 173/358 (48%), Gaps = 84/358 (23%)
Query: 1 MNVGGSVWALDWCPQIHEEPDCSVKCEFVAVATHPPGSSYHKMGDSLVGRGVVQIWCLLN 60
M+VGGSVWA++WCP++H PD KCEF+AVATHPP S HK+G L+GRG++QIWC++N
Sbjct: 114 MHVGGSVWAMEWCPRVHGNPDAQAKCEFLAVATHPPDSYSHKIGIPLIGRGIIQIWCIIN 173
Query: 61 IREHNEDTSSVTEKRKVRPKKDGSTKDKSSQIKRPRGRPRKNSTVIVVDDTNCETQHILS 120
T K K G DK K+ G+ RK
Sbjct: 174 ----------ATCK-----KDSGQVSDKG---KKLTGKSRK------------------- 196
Query: 121 LEVQFAGKCIEFSAPDGNLENSEEMLPTTHKRRRG-PKKNNATNEKPAPMKRPRGRPKKN 179
Q +G+ E + P K+ RG P+K+ +P K+PRGRP+K
Sbjct: 197 ---QPSGETTETTEP---------------KKPRGRPRKHPVETTEP---KKPRGRPRKK 235
Query: 180 STEVTASDSNCKDQFV-PLAVQFPEDLAEFNSPI-------VAYGNCNDHAAQQCSHTNQ 231
ST + + +V L+V++PE+ +P+ V N+ + Q ++
Sbjct: 236 STAELPVELDDDVLYVEALSVRYPENSVVPATPLRILRETPVTETKVNNEGSGQVLSSDN 295
Query: 232 KHAKKADFAHDSKALSRLNINHMEGRYNEGMSQPLLIQCENETNYQLCSSSELEPPAATC 291
+ K + + + E P++++ Y + P++
Sbjct: 296 ANIKLP-----------VRRKRQKTKSTEESCTPMILE------YSEAVGNVPSKPSSGI 338
Query: 292 SVPDITLPRVVSCLAHNGKVAWDVKWRPLNISEPLCKYRMGYLAVLLGNGSLEVWEVP 349
S + LPRVV CLAHNGKV WD+KWRP + L K+ MGYLAVLLGNGSLEVW+VP
Sbjct: 339 SEDIVALPRVVLCLAHNGKVVWDMKWRPSYAGDSLNKHSMGYLAVLLGNGSLEVWDVP 396