Miyakogusa Predicted Gene

Lj0g3v0259189.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0259189.1 Non Chatacterized Hit- tr|G7K9W8|G7K9W8_MEDTR
Putative uncharacterized protein OS=Medicago
truncatul,54.88,0.000000000000006,seg,NULL,CUFF.17066.1
         (220 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G36940.1 | Symbols:  | unknown protein; Has 21 Blast hits to ...    47   9e-06
AT1G36940.2 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...    47   9e-06

>AT1G36940.1 | Symbols:  | unknown protein; Has 21 Blast hits to 21
           proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa
           - 0; Fungi - 0; Plants - 21; Viruses - 0; Other
           Eukaryotes - 0 (source: NCBI BLink). |
           chr1:14004158-14004706 FORWARD LENGTH=182
          Length = 182

 Score = 47.0 bits (110), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 39/67 (58%), Gaps = 6/67 (8%)

Query: 158 ISNENVIPISIENMDPPLPVIKGVRKSDEGN----SLWKRRSGGVALKSLKLPQIHHPRH 213
             N+ +  I +  +DPPLPV+K       G+    +LWKRRSGG  L+SL++    +  H
Sbjct: 118 FGNKKIDVIDVAELDPPLPVVKKTHDGGAGDKAAENLWKRRSGGCQLRSLQIQT--NGVH 175

Query: 214 HLQLTSV 220
            L++T+V
Sbjct: 176 QLKVTTV 182


>AT1G36940.2 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN:
           cellular_component unknown; EXPRESSED IN: 8 plant
           structures; EXPRESSED DURING: 7 growth stages. |
           chr1:14004158-14005436 FORWARD LENGTH=219
          Length = 219

 Score = 47.0 bits (110), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 39/67 (58%), Gaps = 6/67 (8%)

Query: 158 ISNENVIPISIENMDPPLPVIKGVRKSDEGN----SLWKRRSGGVALKSLKLPQIHHPRH 213
             N+ +  I +  +DPPLPV+K       G+    +LWKRRSGG  L+SL++    +  H
Sbjct: 118 FGNKKIDVIDVAELDPPLPVVKKTHDGGAGDKAAENLWKRRSGGCQLRSLQIQT--NGVH 175

Query: 214 HLQLTSV 220
            L++T++
Sbjct: 176 QLKVTTI 182