Miyakogusa Predicted Gene

Lj0g3v0257079.3
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0257079.3 Non Chatacterized Hit- tr|I1MDL7|I1MDL7_SOYBN
Uncharacterized protein (Fragment) OS=Glycine max GN=G,89.08,0,DNA
REPAIR PROTEIN RAD51 HOMOLOG 2, R51H2,NULL; RECA/RAD51/RADA DNA
STRAND-PAIRING FAMILY MEMBER,NUL,CUFF.16895.3
         (371 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma15g04920.1                                                       638   0.0  
Glyma13g40480.1                                                       107   3e-23
Glyma18g52510.1                                                        94   3e-19
Glyma03g03210.1                                                        84   3e-16
Glyma13g17530.1                                                        81   2e-15
Glyma17g04980.1                                                        80   4e-15
Glyma11g15300.1                                                        79   1e-14
Glyma10g38830.1                                                        67   3e-11

>Glyma15g04920.1 
          Length = 349

 Score =  638 bits (1645), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 311/348 (89%), Positives = 327/348 (93%)

Query: 10  GLPKSIANIFTARNIITAKDALSLTDFELMELLDVGMAEVTSAMAHISEVVCPPCQTALL 69
           GLPKSI NIFTARNIITAKDALS T+FELMELLDVG  EVTSAMAH+SEVVCPPCQTALL
Sbjct: 1   GLPKSIVNIFTARNIITAKDALSHTEFELMELLDVGKEEVTSAMAHVSEVVCPPCQTALL 60

Query: 70  LMEQRVRNESLAGHLPTRLKGLDEALCGGIPFGVLTELVGPAGIGKTQFCLKLSLLASMP 129
           L+EQRV NESLAGHL TRLKGLDEALCGGIPFGVLTELVGPAGIGKTQFCLKLSLLAS+P
Sbjct: 61  LLEQRVLNESLAGHLSTRLKGLDEALCGGIPFGVLTELVGPAGIGKTQFCLKLSLLASLP 120

Query: 130 ASCGGLDGRVIYIDVESKFSSKRLIEIGLKSFPEIFHKKGMAQEMAGRILILRPTSLSEF 189
            +CGGLDGRVIYIDVESKF SKRLIEIG+ SFPEIF KKGMAQEMAGRILIL PTSLSEF
Sbjct: 121 TNCGGLDGRVIYIDVESKFRSKRLIEIGINSFPEIFLKKGMAQEMAGRILILHPTSLSEF 180

Query: 190 AECLKQIKVSLLQQHVKLLIIDSMAALVLGEHDCGASRHQALGWHVSFIKSLAEFSRIPI 249
           AE L QI+VSLLQQ VKLLIIDSMAALVLGEHD  ASR QALGWHVSFIKSLAEFSRIP+
Sbjct: 181 AESLHQIRVSLLQQQVKLLIIDSMAALVLGEHDSEASRQQALGWHVSFIKSLAEFSRIPV 240

Query: 250 VLTNQVRSQTGDESRMYSFQAQSHSIKKDNPATYDSHLVAALGINWAHAVTIRLILESKS 309
           VLTNQVRSQ GDESRMYSFQAQSHSI KDNPATYDSHLVAALGINWAHAVTIRL+LE++S
Sbjct: 241 VLTNQVRSQIGDESRMYSFQAQSHSIIKDNPATYDSHLVAALGINWAHAVTIRLVLEARS 300

Query: 310 GQRFIKLAKSPISPPLAFPFSITSSGVVLLDDDGMEIRGPEINTIHCQ 357
           GQRFIKLAKSPIS PLAFPF ITSSG+VLLDD+G+E++GPEINTIHCQ
Sbjct: 301 GQRFIKLAKSPISAPLAFPFKITSSGLVLLDDEGIEMKGPEINTIHCQ 348


>Glyma13g40480.1 
          Length = 90

 Score =  107 bits (266), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 57/91 (62%), Positives = 64/91 (70%), Gaps = 1/91 (1%)

Query: 27  AKDALSLTDFELMELLDVGMAEVTSAMAHISEVVCPPCQTALLLMEQRVRNESLAGHLPT 86
           ++DALS T+FE MELLDVG  EVTSAMAH S +VCPPCQT LL +   +           
Sbjct: 1   SQDALSHTEFEFMELLDVGKEEVTSAMAHASGIVCPPCQTKLLNLVVILYMRYFCWSSEY 60

Query: 87  RLKGLDEALCGGIPFGVLTELVGPAGIGKTQ 117
            +  LDE LC GIPFGVLTELVGPAGIGKTQ
Sbjct: 61  AMS-LDEVLCCGIPFGVLTELVGPAGIGKTQ 90


>Glyma18g52510.1 
          Length = 288

 Score = 94.0 bits (232), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 84/276 (30%), Positives = 129/276 (46%), Gaps = 25/276 (9%)

Query: 91  LDEALCGGIPFGVLTELVGPAGIGKTQFCLKLSLLASMPASCGGLDGRVIYIDVESKFSS 150
           LD  L GG+P   +TE VG +G GKTQ CL+L+L A +P S GGL    I+I  E  F  
Sbjct: 23  LDRCLAGGVPCASVTEFVGESGCGKTQLCLQLALSAQLPPSHGGLSASSIFIHTEFPFPF 82

Query: 151 KRLIEIGLKSFPEIFHKKGMAQEMAGRILILRPTSLSEFAECLKQIKVSLLQ-----QHV 205
           +RL  +  ++F    H      +   R+ +    S  E    +  I+  LL      + V
Sbjct: 83  RRLRHLS-RAF-RASHPDLPCSDPCDRVFLRAVHSAHELLNLIPTIETFLLHSKSPWRPV 140

Query: 206 KLLIIDSMAALVLGEHDCGAS---RHQALGWHVS-FIKSLAEFSRIPIVLTNQVRSQTGD 261
           ++++IDS+AAL   + +   S   R  +L + +S  ++ LA+   I +V+TNQV    GD
Sbjct: 141 RIIVIDSIAALFRSDFENTGSDLRRRSSLFFGISGGLRQLAKRFGIAVVVTNQVVDLIGD 200

Query: 262 ESRMYSFQAQSHSIKKDNPATYDSHLVAALGINWAHAVTIRLILESKSGQRFIKLAK--- 318
                SF +  + +           +  ALG+ WAH V  RL L     +  +K  K   
Sbjct: 201 GD--VSFGSLGNGLYSSG-----RRVCPALGLAWAHCVNSRLFLSKDEDEPPVKTRKMRV 253

Query: 319 --SPISPPLAFPFSITSSGVVLLDDDGMEIRGPEIN 352
             +P  P  +  + I   GV  +  + M+ R  EIN
Sbjct: 254 VFAPHLPHSSCEYVIKGEGVFGV--EMMQHREEEIN 287


>Glyma03g03210.1 
          Length = 368

 Score = 84.0 bits (206), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 73/270 (27%), Positives = 118/270 (43%), Gaps = 39/270 (14%)

Query: 75  VRNESLAGHLPTRLKGLDEALCGGIPFGVLTELVGPAGIGKTQFCLKLSLLASMPASCGG 134
           + +E  + ++ T    LD  L GGI    +TE+ G  GIGKTQ  ++L++   +P   GG
Sbjct: 117 LNDEKFSSYITTSCADLDNILGGGIKCKEVTEIGGVPGIGKTQIGIQLAVNVQIPQEYGG 176

Query: 135 LDGRVIYIDVESKFSSKRLIEIGLKSFPEIFHKKGMA-------QEMAGRILILRPTSLS 187
           L G+ IYI  +            +  +   FHK   A         +   I   R  S +
Sbjct: 177 LGGKAIYIACKED----------MAEYSRHFHKDFQACDVKMHPNNILENIFYFRVCSYT 226

Query: 188 EFAECLKQI-KVSLLQQHVKLLIIDSMAALVLGEHDCGASRHQALGWHVSFIKSLAEFSR 246
           E    +  + K     + VK+LI+DS+      + D  A R + L      +  LA+  R
Sbjct: 227 EQIALINYLDKFITENKDVKILIVDSVTFHFRQDFDDMALRTRLLSEMALKLMKLAKKFR 286

Query: 247 IPIVLTNQVRSQTGDESRMYSFQAQSHSIKKDNPATYDSHLVAALGINWAHAVTIRLILE 306
           + +V+ NQV ++  +     SFQ                 L  ALG +W+H+ T R+IL 
Sbjct: 287 LAVVMFNQVTTKHIEG----SFQ-----------------LTLALGDSWSHSCTNRIILF 325

Query: 307 SKSGQRFIKLAKSPISPPLAFPFSITSSGV 336
               +R   + KSP     + P+S+T+ G+
Sbjct: 326 WNGNERHAFIDKSPSLKSASAPYSVTTRGI 355


>Glyma13g17530.1 
          Length = 344

 Score = 80.9 bits (198), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 73/265 (27%), Positives = 116/265 (43%), Gaps = 32/265 (12%)

Query: 83  HLPTRLKGLDEALCGGIPFGVLTELVGPAGIGKTQFCLKLSLLASMPASCGGLDGRVIYI 142
            + T  + LD+ L GG+  G +TEL G    GKTQ C  L +   +P   GG +G+ +YI
Sbjct: 106 QITTGSRELDKILEGGVETGSITELYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYI 165

Query: 143 DVESKFSSKRLIEIGLKSFPEIFHKKGMAQEMAGRILILRPTSLSEFAECLKQIKVSLLQ 202
           D E  F  +RL++I  +     F   G+  ++   +   R  +    +  L +    +++
Sbjct: 166 DAEGTFRPQRLLQIADR-----FGLNGV--DVLENVAYARAYNTDHQSRLLLEAASMMVE 218

Query: 203 QHVKLLIIDSMAALVLGEHDCGASRHQALGWHVS-FIKSLAEFSR---IPIVLTNQVRSQ 258
               ++I+DS  AL   +   G     A   H++ F++SL + +    + IV+TNQV SQ
Sbjct: 219 TRFAVMIVDSATALYRTDFS-GRGELSARQMHLAKFLRSLQKLADEFGVAIVITNQVVSQ 277

Query: 259 TGDESRMYSFQAQSHSIKKDNPATYDSHLVAALGIN-WAHAVTIRLILESKSG-QRFIKL 316
                              D  A +    +  +G N  AHA T RL L    G +R  K+
Sbjct: 278 V------------------DGSAVFAGPQIKPIGGNIMAHATTTRLALRKGRGEERICKV 319

Query: 317 AKSPISPPLAFPFSITSSGVVLLDD 341
             SP        F I + GV  + D
Sbjct: 320 ISSPCLAEAEARFQICAEGVSDVKD 344


>Glyma17g04980.1 
          Length = 343

 Score = 79.7 bits (195), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 72/257 (28%), Positives = 112/257 (43%), Gaps = 32/257 (12%)

Query: 91  LDEALCGGIPFGVLTELVGPAGIGKTQFCLKLSLLASMPASCGGLDGRVIYIDVESKFSS 150
           LD+ L GG+  G +TEL G    GKTQ C  L +   +P   GG +G+ +YID E  F  
Sbjct: 113 LDKILEGGVETGSITELYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRP 172

Query: 151 KRLIEIGLKSFPEIFHKKGMAQEMAGRILILRPTSLSEFAECLKQIKVSLLQQHVKLLII 210
           +RL++I  +     F   G   ++   +   R  +    +  L +    +++    ++I+
Sbjct: 173 QRLLQIADR-----FGLNGA--DVLENVAYARAYNTDHQSRLLLEAASMMVETRFAVMIV 225

Query: 211 DSMAALVLGEHDCGASRHQALGWHVS-FIKSLAEFSR---IPIVLTNQVRSQTGDESRMY 266
           DS  AL   +   G     A   H++ F++SL + +    + IV+TNQV SQ        
Sbjct: 226 DSATALYRTDFS-GRGELSARQMHLAKFLRSLQKLADEFGVAIVITNQVVSQV------- 277

Query: 267 SFQAQSHSIKKDNPATYDSHLVAALGIN-WAHAVTIRLILESKSG-QRFIKLAKSPISPP 324
                      D  A +    +  +G N  AHA T RL L    G +R  K+  SP    
Sbjct: 278 -----------DGSAVFAGPQIKPIGGNIMAHATTTRLALRKGRGEERICKVISSPCLAE 326

Query: 325 LAFPFSITSSGVVLLDD 341
               F I + GV  + D
Sbjct: 327 AEARFQICAEGVSDVKD 343


>Glyma11g15300.1 
          Length = 321

 Score = 78.6 bits (192), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 72/235 (30%), Positives = 112/235 (47%), Gaps = 22/235 (9%)

Query: 31  LSLTD-FELMELLDVGMAEVTSAMAHISEVVCPPCQTALLLMEQRVRNESLAGHLPTRLK 89
           LS TD     + L  G+ ++ S    I + + PP    L L+E   RN+ +   L T  +
Sbjct: 42  LSFTDNHSTSQTLKQGIDQLIS----IIDALHPPLLNGLQLLEDAQRNKHV---LSTGCE 94

Query: 90  GLDEALCGGIPFGVLTELVGPAGIGKTQFCLKLSLLASMPASCGGLDGRVIYIDVESKFS 149
           G+D  L GG+  G LTELVG +  GKTQ C     L S           VIY+D  + FS
Sbjct: 95  GIDALLRGGLREGQLTELVGSSSSGKTQAC-----LLSASTVVAKHKSSVIYLDTGNSFS 149

Query: 150 SKRLIEIGLKSFPEIFHKKG--MAQEMAGRILILRPTSLSEFAECLKQIKVSLL------ 201
            +R+     +S   IF  +   M +++  RI+      + +  + L Q+K++L       
Sbjct: 150 PQRIAHFVGQSSGHIFGNQADHMLKKVLDRIICYSVFDVYQMFDVLHQLKINLRSEIVKS 209

Query: 202 QQHVKLLIIDSMAALVLGEHDCGASRHQALGWHVSF-IKSLAEFSRIPIVLTNQV 255
            QHV+LLI+DS+++L+         +  AL     F +K LA    I +++TN V
Sbjct: 210 NQHVRLLIVDSISSLITPILGGSGPQGHALMISAGFLLKKLAHEHNIAVLVTNHV 264


>Glyma10g38830.1 
          Length = 335

 Score = 67.0 bits (162), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 66/247 (26%), Positives = 101/247 (40%), Gaps = 33/247 (13%)

Query: 83  HLPTRLKGLDEALCGGIPFGVLTELVGPAGIGKTQFCLKLSLLASMPASCGGLDGRVIYI 142
            + T  + LDE L GG+    +TE  G    GKTQ    L +   +P +  G +G+V YI
Sbjct: 108 RITTGSQALDELLGGGVETSAITEAFGEFRSGKTQLAHTLCVSTQLPTNMRGGNGKVAYI 167

Query: 143 DVESKFSSKRLIEIGLKSFPEIFHKKGM-AQEMAGRILILRPTSLSEFAECLKQIKVSLL 201
           D E  F   R++ I          + GM    +   I+  R  +       L  +   + 
Sbjct: 168 DTEGTFRPDRIVPIA--------ERFGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKMS 219

Query: 202 QQHVKLLIIDSMAALVL----GEHDCGASRHQALGWHVSFIKSLAEFSRIPIVLTNQVRS 257
           ++  +LLI+DS+ AL      G  +  A R Q L   +S +  +AE   + + +TNQV S
Sbjct: 220 EEPFRLLIVDSVIALFRVDFSGRGEL-ADRQQKLAQMLSRLIKIAEEFNVAVYMTNQVIS 278

Query: 258 QTGDESRMYSFQAQSHSIKKDNPATYDSHLVAALGINWAHAVTIRLILESKSG-QRFIKL 316
             G                 D       H++       AHA T+RL+     G QR  K+
Sbjct: 279 DPG-----------GGVFVTDPKKPAGGHVL-------AHAATVRLMFRKGKGEQRICKV 320

Query: 317 AKSPISP 323
             +P  P
Sbjct: 321 FDAPNLP 327