Miyakogusa Predicted Gene
- Lj0g3v0257079.3
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0257079.3 Non Chatacterized Hit- tr|I1MDL7|I1MDL7_SOYBN
Uncharacterized protein (Fragment) OS=Glycine max GN=G,89.08,0,DNA
REPAIR PROTEIN RAD51 HOMOLOG 2, R51H2,NULL; RECA/RAD51/RADA DNA
STRAND-PAIRING FAMILY MEMBER,NUL,CUFF.16895.3
(371 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G28560.2 | Symbols: ATRAD51B, RAD51B | DNA repair (Rad51) fam... 545 e-155
AT2G28560.1 | Symbols: ATRAD51B, RAD51B | DNA repair (Rad51) fam... 538 e-153
AT2G28560.3 | Symbols: ATRAD51B, RAD51B | DNA repair (Rad51) fam... 499 e-141
AT2G28560.4 | Symbols: ATRAD51B, RAD51B | DNA repair (Rad51) fam... 357 1e-98
AT2G45280.1 | Symbols: ATRAD51C, RAD51C | RAS associated with di... 93 3e-19
AT2G45280.2 | Symbols: RAD51C | RAS associated with diabetes pro... 93 3e-19
AT5G20850.1 | Symbols: ATRAD51, RAD51 | RAS associated with diab... 84 2e-16
AT5G57450.2 | Symbols: XRCC3, ATXRCC3 | homolog of X-ray repair ... 80 2e-15
AT5G57450.1 | Symbols: XRCC3, ATXRCC3 | homolog of X-ray repair ... 80 2e-15
AT1G07745.2 | Symbols: ATRAD51D, RAD51D, SSN1 | homolog of RAD51... 74 1e-13
AT1G07745.1 | Symbols: ATRAD51D, RAD51D, SSN1 | homolog of RAD51... 74 1e-13
AT3G22880.1 | Symbols: ATDMC1, DMC1, ARLIM15 | DNA repair (Rad51... 68 8e-12
>AT2G28560.2 | Symbols: ATRAD51B, RAD51B | DNA repair (Rad51) family
protein | chr2:12236876-12239086 REVERSE LENGTH=370
Length = 370
Score = 545 bits (1405), Expect = e-155, Method: Compositional matrix adjust.
Identities = 258/367 (70%), Positives = 308/367 (83%)
Query: 1 MANKVIKQMGLPKSIANIFTARNIITAKDALSLTDFELMELLDVGMAEVTSAMAHISEVV 60
MANK+I +MGL I+NIF ARNIITAKDALS+T+FELMELLDVGM E+ SA++ ISE
Sbjct: 1 MANKLIGEMGLHTKISNIFAARNIITAKDALSMTEFELMELLDVGMKEIRSAISFISEAT 60
Query: 61 CPPCQTALLLMEQRVRNESLAGHLPTRLKGLDEALCGGIPFGVLTELVGPAGIGKTQFCL 120
PPCQ+A L+E++V NE L+GHLPT LKGLD+ LCGGIPFGVLTELVGP GIGK+QFC+
Sbjct: 61 SPPCQSARSLLEKKVENEHLSGHLPTHLKGLDDTLCGGIPFGVLTELVGPPGIGKSQFCM 120
Query: 121 KLSLLASMPASCGGLDGRVIYIDVESKFSSKRLIEIGLKSFPEIFHKKGMAQEMAGRILI 180
KL+L AS P + GGLDGRVIYIDVESKFSS+R+IE+GL+SFPE+FH KGMAQEMAGRIL+
Sbjct: 121 KLALSASFPVAYGGLDGRVIYIDVESKFSSRRVIEMGLESFPEVFHLKGMAQEMAGRILV 180
Query: 181 LRPTSLSEFAECLKQIKVSLLQQHVKLLIIDSMAALVLGEHDCGASRHQALGWHVSFIKS 240
LRPTSL+ F E ++++K S+LQ VKLL+IDSM AL+ GE+ GA R LGWH+SF+KS
Sbjct: 181 LRPTSLANFTESIQELKNSILQNQVKLLVIDSMTALLSGENKPGAQRQPQLGWHISFLKS 240
Query: 241 LAEFSRIPIVLTNQVRSQTGDESRMYSFQAQSHSIKKDNPATYDSHLVAALGINWAHAVT 300
LAEFSRIPIV+TNQVRSQ DE+ YSFQA+ KDN TYDSHLVAALGINWAHAVT
Sbjct: 241 LAEFSRIPIVVTNQVRSQNRDETSQYSFQAKVKDEFKDNTKTYDSHLVAALGINWAHAVT 300
Query: 301 IRLILESKSGQRFIKLAKSPISPPLAFPFSITSSGVVLLDDDGMEIRGPEINTIHCQGQN 360
IRL+LE+KSGQR IK+AKSP+SPPLAFPF ITS+G+ LL D+G E++GP INTIH +G +
Sbjct: 301 IRLVLEAKSGQRIIKVAKSPMSPPLAFPFHITSAGISLLSDNGTELKGPGINTIHARGHS 360
Query: 361 ALFNFEG 367
+ NF G
Sbjct: 361 DMINFHG 367
>AT2G28560.1 | Symbols: ATRAD51B, RAD51B | DNA repair (Rad51) family
protein | chr2:12237052-12239086 REVERSE LENGTH=371
Length = 371
Score = 538 bits (1387), Expect = e-153, Method: Compositional matrix adjust.
Identities = 255/358 (71%), Positives = 303/358 (84%)
Query: 1 MANKVIKQMGLPKSIANIFTARNIITAKDALSLTDFELMELLDVGMAEVTSAMAHISEVV 60
MANK+I +MGL I+NIF ARNIITAKDALS+T+FELMELLDVGM E+ SA++ ISE
Sbjct: 1 MANKLIGEMGLHTKISNIFAARNIITAKDALSMTEFELMELLDVGMKEIRSAISFISEAT 60
Query: 61 CPPCQTALLLMEQRVRNESLAGHLPTRLKGLDEALCGGIPFGVLTELVGPAGIGKTQFCL 120
PPCQ+A L+E++V NE L+GHLPT LKGLD+ LCGGIPFGVLTELVGP GIGK+QFC+
Sbjct: 61 SPPCQSARSLLEKKVENEHLSGHLPTHLKGLDDTLCGGIPFGVLTELVGPPGIGKSQFCM 120
Query: 121 KLSLLASMPASCGGLDGRVIYIDVESKFSSKRLIEIGLKSFPEIFHKKGMAQEMAGRILI 180
KL+L AS P + GGLDGRVIYIDVESKFSS+R+IE+GL+SFPE+FH KGMAQEMAGRIL+
Sbjct: 121 KLALSASFPVAYGGLDGRVIYIDVESKFSSRRVIEMGLESFPEVFHLKGMAQEMAGRILV 180
Query: 181 LRPTSLSEFAECLKQIKVSLLQQHVKLLIIDSMAALVLGEHDCGASRHQALGWHVSFIKS 240
LRPTSL+ F E ++++K S+LQ VKLL+IDSM AL+ GE+ GA R LGWH+SF+KS
Sbjct: 181 LRPTSLANFTESIQELKNSILQNQVKLLVIDSMTALLSGENKPGAQRQPQLGWHISFLKS 240
Query: 241 LAEFSRIPIVLTNQVRSQTGDESRMYSFQAQSHSIKKDNPATYDSHLVAALGINWAHAVT 300
LAEFSRIPIV+TNQVRSQ DE+ YSFQA+ KDN TYDSHLVAALGINWAHAVT
Sbjct: 241 LAEFSRIPIVVTNQVRSQNRDETSQYSFQAKVKDEFKDNTKTYDSHLVAALGINWAHAVT 300
Query: 301 IRLILESKSGQRFIKLAKSPISPPLAFPFSITSSGVVLLDDDGMEIRGPEINTIHCQG 358
IRL+LE+KSGQR IK+AKSP+SPPLAFPF ITS+G+ LL D+G E++GP INTIH +G
Sbjct: 301 IRLVLEAKSGQRIIKVAKSPMSPPLAFPFHITSAGISLLSDNGTELKGPGINTIHARG 358
>AT2G28560.3 | Symbols: ATRAD51B, RAD51B | DNA repair (Rad51) family
protein | chr2:12236876-12238913 REVERSE LENGTH=338
Length = 338
Score = 499 bits (1284), Expect = e-141, Method: Compositional matrix adjust.
Identities = 234/335 (69%), Positives = 281/335 (83%)
Query: 33 LTDFELMELLDVGMAEVTSAMAHISEVVCPPCQTALLLMEQRVRNESLAGHLPTRLKGLD 92
+T+FELMELLDVGM E+ SA++ ISE PPCQ+A L+E++V NE L+GHLPT LKGLD
Sbjct: 1 MTEFELMELLDVGMKEIRSAISFISEATSPPCQSARSLLEKKVENEHLSGHLPTHLKGLD 60
Query: 93 EALCGGIPFGVLTELVGPAGIGKTQFCLKLSLLASMPASCGGLDGRVIYIDVESKFSSKR 152
+ LCGGIPFGVLTELVGP GIGK+QFC+KL+L AS P + GGLDGRVIYIDVESKFSS+R
Sbjct: 61 DTLCGGIPFGVLTELVGPPGIGKSQFCMKLALSASFPVAYGGLDGRVIYIDVESKFSSRR 120
Query: 153 LIEIGLKSFPEIFHKKGMAQEMAGRILILRPTSLSEFAECLKQIKVSLLQQHVKLLIIDS 212
+IE+GL+SFPE+FH KGMAQEMAGRIL+LRPTSL+ F E ++++K S+LQ VKLL+IDS
Sbjct: 121 VIEMGLESFPEVFHLKGMAQEMAGRILVLRPTSLANFTESIQELKNSILQNQVKLLVIDS 180
Query: 213 MAALVLGEHDCGASRHQALGWHVSFIKSLAEFSRIPIVLTNQVRSQTGDESRMYSFQAQS 272
M AL+ GE+ GA R LGWH+SF+KSLAEFSRIPIV+TNQVRSQ DE+ YSFQA+
Sbjct: 181 MTALLSGENKPGAQRQPQLGWHISFLKSLAEFSRIPIVVTNQVRSQNRDETSQYSFQAKV 240
Query: 273 HSIKKDNPATYDSHLVAALGINWAHAVTIRLILESKSGQRFIKLAKSPISPPLAFPFSIT 332
KDN TYDSHLVAALGINWAHAVTIRL+LE+KSGQR IK+AKSP+SPPLAFPF IT
Sbjct: 241 KDEFKDNTKTYDSHLVAALGINWAHAVTIRLVLEAKSGQRIIKVAKSPMSPPLAFPFHIT 300
Query: 333 SSGVVLLDDDGMEIRGPEINTIHCQGQNALFNFEG 367
S+G+ LL D+G E++GP INTIH +G + + NF G
Sbjct: 301 SAGISLLSDNGTELKGPGINTIHARGHSDMINFHG 335
>AT2G28560.4 | Symbols: ATRAD51B, RAD51B | DNA repair (Rad51) family
protein | chr2:12237438-12238913 REVERSE LENGTH=243
Length = 243
Score = 357 bits (915), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 167/237 (70%), Positives = 201/237 (84%)
Query: 33 LTDFELMELLDVGMAEVTSAMAHISEVVCPPCQTALLLMEQRVRNESLAGHLPTRLKGLD 92
+T+FELMELLDVGM E+ SA++ ISE PPCQ+A L+E++V NE L+GHLPT LKGLD
Sbjct: 1 MTEFELMELLDVGMKEIRSAISFISEATSPPCQSARSLLEKKVENEHLSGHLPTHLKGLD 60
Query: 93 EALCGGIPFGVLTELVGPAGIGKTQFCLKLSLLASMPASCGGLDGRVIYIDVESKFSSKR 152
+ LCGGIPFGVLTELVGP GIGK+QFC+KL+L AS P + GGLDGRVIYIDVESKFSS+R
Sbjct: 61 DTLCGGIPFGVLTELVGPPGIGKSQFCMKLALSASFPVAYGGLDGRVIYIDVESKFSSRR 120
Query: 153 LIEIGLKSFPEIFHKKGMAQEMAGRILILRPTSLSEFAECLKQIKVSLLQQHVKLLIIDS 212
+IE+GL+SFPE+FH KGMAQEMAGRIL+LRPTSL+ F E ++++K S+LQ VKLL+IDS
Sbjct: 121 VIEMGLESFPEVFHLKGMAQEMAGRILVLRPTSLANFTESIQELKNSILQNQVKLLVIDS 180
Query: 213 MAALVLGEHDCGASRHQALGWHVSFIKSLAEFSRIPIVLTNQVRSQTGDESRMYSFQ 269
M AL+ GE+ GA R LGWH+SF+KSLAEFSRIPIV+TNQVRSQ DE+ YSFQ
Sbjct: 181 MTALLSGENKPGAQRQPQLGWHISFLKSLAEFSRIPIVVTNQVRSQNRDETSQYSFQ 237
>AT2G45280.1 | Symbols: ATRAD51C, RAD51C | RAS associated with
diabetes protein 51C | chr2:18670103-18672041 FORWARD
LENGTH=363
Length = 363
Score = 93.2 bits (230), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 78/269 (28%), Positives = 129/269 (47%), Gaps = 37/269 (13%)
Query: 83 HLPTRLKGLDEALCGGIPFGVLTELVGPAGIGKTQFCLKLSLLASMPASCGGLDGRVIYI 142
+ T LD L GGI +TE+ G GIGKTQ ++LS+ +P CGGL G+ IYI
Sbjct: 104 RITTSCSDLDNILGGGISCRDVTEIGGVPGIGKTQIGIQLSVNVQIPRECGGLGGKAIYI 163
Query: 143 DVESKFSSKRLIEIG------LKSFPEIFHKKGMAQEMAGR-------ILILRPTSLSEF 189
D E F +R ++I ++ + HK A ++ + I R S +E
Sbjct: 164 DTEGSFMVERALQIAEACVEDMEEYTGYMHKHFQANQVQMKPEDILENIFYFRVCSYTEQ 223
Query: 190 AECLKQIKVSLLQ-QHVKLLIIDSMAALVLGEHDCGASRHQALG-WHVSFIKSLAEFSRI 247
+ ++ + + + VK++I+DS+ ++D A R + L + F+K +FS +
Sbjct: 224 IALVNHLEKFISENKDVKVVIVDSITFHFRQDYDDLAQRTRVLSEMALKFMKLAKKFS-L 282
Query: 248 PIVLTNQVRSQTGDESRMYSFQAQSHSIKKDNPATYDSHLVAALGINWAHAVTIRLILES 307
+VL NQV ++ + SFQ L ALG +W+H+ T R+IL
Sbjct: 283 AVVLLNQVTTKFSEG----SFQ-----------------LALALGDSWSHSCTNRVILYW 321
Query: 308 KSGQRFIKLAKSPISPPLAFPFSITSSGV 336
+R+ + KSP P + +++TS G+
Sbjct: 322 NGDERYAYIDKSPSLPSASASYTVTSRGL 350
>AT2G45280.2 | Symbols: RAD51C | RAS associated with diabetes
protein 51C | chr2:18670103-18672041 FORWARD LENGTH=387
Length = 387
Score = 93.2 bits (230), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 78/269 (28%), Positives = 129/269 (47%), Gaps = 37/269 (13%)
Query: 83 HLPTRLKGLDEALCGGIPFGVLTELVGPAGIGKTQFCLKLSLLASMPASCGGLDGRVIYI 142
+ T LD L GGI +TE+ G GIGKTQ ++LS+ +P CGGL G+ IYI
Sbjct: 128 RITTSCSDLDNILGGGISCRDVTEIGGVPGIGKTQIGIQLSVNVQIPRECGGLGGKAIYI 187
Query: 143 DVESKFSSKRLIEIG------LKSFPEIFHKKGMAQEMAGR-------ILILRPTSLSEF 189
D E F +R ++I ++ + HK A ++ + I R S +E
Sbjct: 188 DTEGSFMVERALQIAEACVEDMEEYTGYMHKHFQANQVQMKPEDILENIFYFRVCSYTEQ 247
Query: 190 AECLKQIKVSLLQ-QHVKLLIIDSMAALVLGEHDCGASRHQALG-WHVSFIKSLAEFSRI 247
+ ++ + + + VK++I+DS+ ++D A R + L + F+K +FS +
Sbjct: 248 IALVNHLEKFISENKDVKVVIVDSITFHFRQDYDDLAQRTRVLSEMALKFMKLAKKFS-L 306
Query: 248 PIVLTNQVRSQTGDESRMYSFQAQSHSIKKDNPATYDSHLVAALGINWAHAVTIRLILES 307
+VL NQV ++ + SFQ L ALG +W+H+ T R+IL
Sbjct: 307 AVVLLNQVTTKFSEG----SFQ-----------------LALALGDSWSHSCTNRVILYW 345
Query: 308 KSGQRFIKLAKSPISPPLAFPFSITSSGV 336
+R+ + KSP P + +++TS G+
Sbjct: 346 NGDERYAYIDKSPSLPSASASYTVTSRGL 374
>AT5G20850.1 | Symbols: ATRAD51, RAD51 | RAS associated with
diabetes protein 51 | chr5:7070758-7072860 REVERSE
LENGTH=342
Length = 342
Score = 83.6 bits (205), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 73/257 (28%), Positives = 114/257 (44%), Gaps = 32/257 (12%)
Query: 91 LDEALCGGIPFGVLTELVGPAGIGKTQFCLKLSLLASMPASCGGLDGRVIYIDVESKFSS 150
LD+ L GGI G +TEL G GKTQ C L + +P GG +G+ +YID E F
Sbjct: 112 LDKVLEGGIETGSITELYGEFRSGKTQLCHTLCVTCQLPMDQGGGEGKAMYIDAEGTFRP 171
Query: 151 KRLIEIGLKSFPEIFHKKGMAQEMAGRILILRPTSLSEFAECLKQIKVSLLQQHVKLLII 210
+RL++I + F G ++ + R + + L + +++ LLI+
Sbjct: 172 QRLLQIADR-----FGLNGA--DVLENVAYARAYNTDHQSRLLLEAASMMIETRFALLIV 224
Query: 211 DSMAALVLGEHDCGASRHQALGWHVS-FIKSLAEFSR---IPIVLTNQVRSQTGDESRMY 266
DS AL + G A H++ F++SL + + + +V+TNQV +Q
Sbjct: 225 DSATALYRTDFS-GRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVAQV------- 276
Query: 267 SFQAQSHSIKKDNPATYDSHLVAALGIN-WAHAVTIRLIL-ESKSGQRFIKLAKSPISPP 324
D A + +G N AHA T RL L + ++ +R K+ SP P
Sbjct: 277 -----------DGSALFAGPQFKPIGGNIMAHATTTRLALRKGRAEERICKVISSPCLPE 325
Query: 325 LAFPFSITSSGVVLLDD 341
F I++ GV D
Sbjct: 326 AEARFQISTEGVTDCKD 342
>AT5G57450.2 | Symbols: XRCC3, ATXRCC3 | homolog of X-ray repair
cross complementing 3 (XRCC3) | chr5:23274008-23274922
REVERSE LENGTH=304
Length = 304
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 84/309 (27%), Positives = 135/309 (43%), Gaps = 48/309 (15%)
Query: 65 QTALLLMEQRVRNESLAGHLPTRLKGLDEALCGGIPFGVLTELVGPAGIGKTQFCLKLSL 124
Q + E +R L T + LD L GGI LTE+V +G GKTQ CL+LSL
Sbjct: 2 QNGKIKPENLLRRSPTNRKLTTGCEILDGCLRGGISCDSLTEIVAESGCGKTQLCLQLSL 61
Query: 125 LASMPASCGGLDGRVIYIDVESKFSSKRLIEIG---LKSFPEIFHKKGMAQEMAGRILIL 181
+P S GGL+G +Y+ E F +RL ++ +S P I+ + +
Sbjct: 62 CTQLPISHGGLNGSSLYLHSEFPFPFRRLHQLSHTFHQSNPSIY--ANYNDNPCDHVFVQ 119
Query: 182 RPTSLSEFAECLKQIK----VSLLQQHVKLLIIDSMAALVLGEHDCGAS---RHQALGWH 234
S+ + + +I S + +KL+++DS+AAL E D S + +L +
Sbjct: 120 NVHSVDHLFDIMPRIDGFVGNSKTRFPLKLIVLDSVAALFRSEFDNTPSDLKKRSSLFFK 179
Query: 235 VS-FIKSLAEFSRIPIVLTNQVRS--QTGD---ESRMYSFQAQSHSIKKDNPATYDSHLV 288
+S +K LA + IV+TNQV +T D R+ + + S ++ +V
Sbjct: 180 ISGKLKQLASKFDLAIVITNQVTDLVETSDGLSGLRIGNLRYLYSSGRR---------VV 230
Query: 289 AALGINWAHAVTIRLILE---------------------SKSGQRFIKLAKSPISPPLAF 327
+LG+ WA+ V R + S+S +R + + SP P +
Sbjct: 231 PSLGLAWANCVNSRFFISRSDGSIVKDRSEKDENCSSSVSRSAKRRLDIVFSPYLPGSSC 290
Query: 328 PFSITSSGV 336
F IT G+
Sbjct: 291 EFMITREGI 299
>AT5G57450.1 | Symbols: XRCC3, ATXRCC3 | homolog of X-ray repair
cross complementing 3 (XRCC3) | chr5:23274008-23274922
REVERSE LENGTH=304
Length = 304
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 84/309 (27%), Positives = 135/309 (43%), Gaps = 48/309 (15%)
Query: 65 QTALLLMEQRVRNESLAGHLPTRLKGLDEALCGGIPFGVLTELVGPAGIGKTQFCLKLSL 124
Q + E +R L T + LD L GGI LTE+V +G GKTQ CL+LSL
Sbjct: 2 QNGKIKPENLLRRSPTNRKLTTGCEILDGCLRGGISCDSLTEIVAESGCGKTQLCLQLSL 61
Query: 125 LASMPASCGGLDGRVIYIDVESKFSSKRLIEIG---LKSFPEIFHKKGMAQEMAGRILIL 181
+P S GGL+G +Y+ E F +RL ++ +S P I+ + +
Sbjct: 62 CTQLPISHGGLNGSSLYLHSEFPFPFRRLHQLSHTFHQSNPSIY--ANYNDNPCDHVFVQ 119
Query: 182 RPTSLSEFAECLKQIK----VSLLQQHVKLLIIDSMAALVLGEHDCGAS---RHQALGWH 234
S+ + + +I S + +KL+++DS+AAL E D S + +L +
Sbjct: 120 NVHSVDHLFDIMPRIDGFVGNSKTRFPLKLIVLDSVAALFRSEFDNTPSDLKKRSSLFFK 179
Query: 235 VS-FIKSLAEFSRIPIVLTNQVRS--QTGD---ESRMYSFQAQSHSIKKDNPATYDSHLV 288
+S +K LA + IV+TNQV +T D R+ + + S ++ +V
Sbjct: 180 ISGKLKQLASKFDLAIVITNQVTDLVETSDGLSGLRIGNLRYLYSSGRR---------VV 230
Query: 289 AALGINWAHAVTIRLILE---------------------SKSGQRFIKLAKSPISPPLAF 327
+LG+ WA+ V R + S+S +R + + SP P +
Sbjct: 231 PSLGLAWANCVNSRFFISRSDGSIVKDRSEKDENCSSSVSRSAKRRLDIVFSPYLPGSSC 290
Query: 328 PFSITSSGV 336
F IT G+
Sbjct: 291 EFMITREGI 299
>AT1G07745.2 | Symbols: ATRAD51D, RAD51D, SSN1 | homolog of RAD51 D
| chr1:2400797-2402492 REVERSE LENGTH=304
Length = 304
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 72/243 (29%), Positives = 115/243 (47%), Gaps = 26/243 (10%)
Query: 29 DALSLTDFELMELLDVGMAEVTSAMAHISEVVCPPCQTALLLMEQRVRNESLAGHLPTRL 88
D LT F + + E + + + E C P L L+E RN+ L T
Sbjct: 19 DLYELTAFSQRQTNADRLKEGITLILSLIERQCRPLVNGLKLLEDLHRNKHT---LSTGD 75
Query: 89 KGLDEALCGGIPFGVLTELVGPAGIGKTQFCLKLSLLASMPASCGGLDGRVIYIDVESKF 148
K D L GG G LTELVGP+ GKTQFC++ A+ + L GRV+Y+D + F
Sbjct: 76 KETDSLLQGGFREGQLTELVGPSSSGKTQFCMQ----AAASVAENHL-GRVLYLDTGNSF 130
Query: 149 SSKRLIEIGLKSFPEIFHKKGMAQEMAGRILILRPTSLSEFAECLKQIKVSL-LQQHV-- 205
S++R+ + S +K M+ RIL + + L+ ++++L LQ +V
Sbjct: 131 SARRIAQFICSSSDATLGQKVMS-----RILCHTVYDIYTLFDTLQDLEITLRLQMNVNE 185
Query: 206 ---KLLIIDSMAALVL----GEHDCGASRHQALGWHVSFIKSLAEFSRIPIVLTNQVRSQ 258
+LL++DS+++L+ G G + A+G+ +K LA I I++TN
Sbjct: 186 SRLRLLVVDSISSLITPILGGSGSQGRALMVAIGY---LLKKLAHEHSIAILVTNHTVGA 242
Query: 259 TGD 261
G+
Sbjct: 243 GGE 245
>AT1G07745.1 | Symbols: ATRAD51D, RAD51D, SSN1 | homolog of RAD51 D
| chr1:2400797-2402842 REVERSE LENGTH=322
Length = 322
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 71/243 (29%), Positives = 115/243 (47%), Gaps = 26/243 (10%)
Query: 29 DALSLTDFELMELLDVGMAEVTSAMAHISEVVCPPCQTALLLMEQRVRNESLAGHLPTRL 88
D LT F + + E + + + E C P L L+E RN+ L T
Sbjct: 37 DLYELTAFSQRQTNADRLKEGITLILSLIERQCRPLVNGLKLLEDLHRNKHT---LSTGD 93
Query: 89 KGLDEALCGGIPFGVLTELVGPAGIGKTQFCLKLSLLASMPASCGGLDGRVIYIDVESKF 148
K D L GG G LTELVGP+ GKTQFC++ A+ + L GRV+Y+D + F
Sbjct: 94 KETDSLLQGGFREGQLTELVGPSSSGKTQFCMQ----AAASVAENHL-GRVLYLDTGNSF 148
Query: 149 SSKRLIEIGLKSFPEIFHKKGMAQEMAGRILILRPTSLSEFAECLKQIKVSL-LQQHV-- 205
S++R+ + S + Q++ RIL + + L+ ++++L LQ +V
Sbjct: 149 SARRIAQFICSSSDAT-----LGQKVMSRILCHTVYDIYTLFDTLQDLEITLRLQMNVNE 203
Query: 206 ---KLLIIDSMAALVL----GEHDCGASRHQALGWHVSFIKSLAEFSRIPIVLTNQVRSQ 258
+LL++DS+++L+ G G + A+G+ +K LA I I++TN
Sbjct: 204 SRLRLLVVDSISSLITPILGGSGSQGRALMVAIGY---LLKKLAHEHSIAILVTNHTVGA 260
Query: 259 TGD 261
G+
Sbjct: 261 GGE 263
>AT3G22880.1 | Symbols: ATDMC1, DMC1, ARLIM15 | DNA repair (Rad51)
family protein | chr3:8097948-8100740 REVERSE LENGTH=344
Length = 344
Score = 68.2 bits (165), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 70/264 (26%), Positives = 109/264 (41%), Gaps = 33/264 (12%)
Query: 84 LPTRLKGLDEALCGGIPFGVLTELVGPAGIGKTQFCLKLSLLASMPASCGGLDGRVIYID 143
+ T + LD+ L GGI +TE G GKTQ L + +P + G +G+V YID
Sbjct: 108 ITTGCQALDDLLGGGIETSAITEAFGEFRSGKTQLAHTLCVTTQLPTNMKGGNGKVAYID 167
Query: 144 VESKFSSKRLIEIGLKSFPEIFHKKGM-AQEMAGRILILRPTSLSEFAECLKQIKVSLLQ 202
E F R++ I + GM + I+ R + L + + +
Sbjct: 168 TEGTFRPDRIVPIA--------ERFGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSE 219
Query: 203 QHVKLLIIDSMAAL----VLGEHDCGASRHQALGWHVSFIKSLAEFSRIPIVLTNQVRSQ 258
+ ++LI+DS+ AL G + A R Q L +S + +AE + + +TNQV +
Sbjct: 220 EPFRILIVDSIIALFRVDFTGRGEL-ADRQQKLAQMLSRLIKIAEEFNVAVYMTNQVIAD 278
Query: 259 TGDESRMYSFQAQSHSIKKDNPATYDSHLVAALGINWAHAVTIRLILESKSGQ-RFIKLA 317
G M+ + PA H++ AHA TIRL+ G R K+
Sbjct: 279 PG--GGMFISDPK-------KPA--GGHVL-------AHAATIRLLFRKGKGDTRVCKVY 320
Query: 318 KSPISPPLAFPFSITSSGVVLLDD 341
+P F IT G+ D
Sbjct: 321 DAPNLAEAEASFQITQGGIADAKD 344