Miyakogusa Predicted Gene

Lj0g3v0254869.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0254869.1 tr|G7LEG2|G7LEG2_MEDTR S locus F-box protein d
OS=Medicago truncatula GN=MTR_8g036970 PE=4
SV=1,40,1e-18,F_box_assoc_1: F-box protein interaction domain,F-box
associated interaction domain; FBA_1,F-box ass,CUFF.16737.1
         (412 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G48060.1 | Symbols:  | F-box and associated interaction domai...    58   9e-09
AT4G21240.1 | Symbols:  | F-box and associated interaction domai...    57   3e-08
AT5G49610.1 | Symbols:  | F-box family protein | chr5:20131448-2...    52   6e-07
AT2G31470.1 | Symbols: DOR | F-box and associated interaction do...    51   1e-06
AT3G57590.1 | Symbols:  | F-box and associated interaction domai...    51   2e-06
AT1G32420.1 | Symbols:  | F-box and associated interaction domai...    51   2e-06
AT3G10240.1 | Symbols:  | F-box and associated interaction domai...    50   3e-06
AT1G47340.1 | Symbols:  | F-box and associated interaction domai...    50   3e-06
AT1G12870.1 | Symbols:  | F-box and associated interaction domai...    49   5e-06
AT1G47765.1 | Symbols:  | F-box and associated interaction domai...    49   6e-06
AT1G47730.1 | Symbols:  | F-box and associated interaction domai...    49   8e-06

>AT1G48060.1 | Symbols:  | F-box and associated interaction
           domains-containing protein | chr1:17728295-17729448
           FORWARD LENGTH=353
          Length = 353

 Score = 58.2 bits (139), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 45/171 (26%), Positives = 76/171 (44%), Gaps = 23/171 (13%)

Query: 3   IPDDVAFTILSKLPLKSLKRFTLVHKSWVDLHEIPYFMSMFRSN----FLSKHQSYYDDT 58
           IP D+A  I  +LP KS+ RF+ V K W  +   PYF + F +     F  K    +   
Sbjct: 14  IPLDIATDIFLRLPAKSVVRFSCVAKHWSSITTAPYFTNSFETRPNLLFFFKEADRFFVV 73

Query: 59  SLLVLQQQPSDGTHCHGSLFLLSGDNFEKTVKSDWLPYQEHGRFLSVLGSGIHGILCLHE 118
           ++    ++P++      S  L   D+++        PY +H  F ++    +HG++C   
Sbjct: 74  TVPKPNRRPNESVSHTSSQIL---DSYQ-------TPYPKHSCF-TIKTESVHGLICFQR 122

Query: 119 APDYKYVLWNPATEEFRVTPPSPRESLPYWEAYIKPHGFGYDPITDDFKVL 169
               K ++WNP   +F+      R+    WE+       GYDP+    KV+
Sbjct: 123 GT--KPIVWNPTMRKFKPL----RKPDKSWESLTV--FLGYDPLERTHKVV 165


>AT4G21240.1 | Symbols:  | F-box and associated interaction
           domains-containing protein | chr4:11322411-11323664
           FORWARD LENGTH=417
          Length = 417

 Score = 56.6 bits (135), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 99/386 (25%), Positives = 156/386 (40%), Gaps = 97/386 (25%)

Query: 3   IPDDVAFTILSKLPLKSLKRFTLVHKSWVDLHEIPYFMSMF------RSNFLSKHQSYYD 56
           IP D+   IL +LP KS  RF +V K W+ +   PYF+  F      R   ++  ++   
Sbjct: 36  IPLDMIPDILLRLPAKSAVRFRIVSKLWLSITTRPYFIRSFAFPSSTRLCLMACVKAR-- 93

Query: 57  DTSLLVLQQQPSDGTHCHGSLFLLSGDNFE-KTVKSDWL-PYQEHGRFLSVLGSGIHGIL 114
           D  L +   Q  DG++ H        D  E K+ K D+  P  E           ++G++
Sbjct: 94  DMRLFISLHQHDDGSYAH-------VDRCEIKSPKHDYYNPSSE----------SVNGLV 136

Query: 115 CLHEAPDYKYVLWNPATEEFRVTP-PSPRESLPYWEAYIKPHGFGYDPITDDFKVLRHIT 173
           C  +   Y  V+WNP+  +    P P P  ++ Y   +I+    GYDP+ D +KVL    
Sbjct: 137 CFGDF--YNIVVWNPSMRQHVTLPEPKPHSTVRY---FIR-SCLGYDPVEDKYKVL---- 186

Query: 174 FYPDYDYGQDEYHSGVXXXXXXXXXXXXXXXXXPMISDHLP---SRIPQPFWEIYSLRSN 230
                      YH+G                      +H P   +  PQ  W +     N
Sbjct: 187 -------SISGYHNG----------------------NHDPLVFTLGPQESWRVI---QN 214

Query: 231 SWRKLDADMPITGGGPDKGGDTYMNGVCNWLSYGRIYD---YGFDTHLVSFNFSNEIFYT 287
           S      D+P+  GG   G  T +NG   + +  R      + F+  L+SF+   E F T
Sbjct: 215 S----PLDIPLPTGGSRVG--TCINGHVYYEAQIRFKVDDIFNFENILMSFDVRYEKFNT 268

Query: 288 TPLPLDLADTRVQTYLAVLNESIALISMHEETTTFHISILGEQGVKESWT-KLFIV---- 342
              P   AD  ++ ++  LN    L     + ++    +L + G K+ W+ K FI+    
Sbjct: 269 IKKP---ADPTLRNFM--LNYQGKLAWFCSDYSSIRFWVL-DDGDKQEWSLKNFILPFPI 322

Query: 343 --GLGPLHD--VGLPIAVGKTGEMIF 364
              + P+ +  V L      TGE IF
Sbjct: 323 SPEIDPIFECRVMLTGVTHDTGEFIF 348


>AT5G49610.1 | Symbols:  | F-box family protein |
           chr5:20131448-20132527 REVERSE LENGTH=359
          Length = 359

 Score = 52.4 bits (124), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 46/138 (33%), Positives = 65/138 (47%), Gaps = 21/138 (15%)

Query: 4   PDDVAFTILSKLPLKSLKRFTLVHKSWVDLHEIPYFMSMFRSNFLSKHQSYYDDTSLLVL 63
           PD+V   IL++LP+KSL RF  V KSW  L    YF S+F  N LS  +       LLV 
Sbjct: 10  PDEVILQILARLPVKSLFRFKSVCKSWYRLPSDKYFTSLF--NQLSVKE------QLLVA 61

Query: 64  QQQPSDGTHCHGSLFLLSGDNFEKTVKSDWLPYQEHGRFLSVLGSGIHGILCLHEAPDYK 123
           +   S    C  +L  +S       +  D++  +   R  S      +G+LC    P+  
Sbjct: 62  EVSDSSSLICVDNLRGVS------ELSLDFVRDRVRIRVSS------NGLLCCSSIPEKG 109

Query: 124 -YVLWNPATEEFRVTPPS 140
            Y + NP+T E+R  P S
Sbjct: 110 VYYVCNPSTREYRKLPKS 127


>AT2G31470.1 | Symbols: DOR | F-box and associated interaction
           domains-containing protein | chr2:13407492-13408655
           REVERSE LENGTH=387
          Length = 387

 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/180 (25%), Positives = 73/180 (40%), Gaps = 32/180 (17%)

Query: 3   IPDDVAFTILSKLPLKSLKRFTLVHKSWVDLHEIPYFMSMFRSNFLSKHQSYYDDTSLLV 62
           IP D+   I S+ P+KS+ R   V K W  +  +PYF  ++ +   ++ +       LL 
Sbjct: 25  IPIDLVIEIFSRSPVKSIARCRCVSKLWASILRLPYFTELYLTKSCARPR-------LLF 77

Query: 63  LQQQPSDGTHCHGSLFLLSGDNFEKTVKSD---------WLPYQEHGRFLSVLGSGI--- 110
             Q+       H  LF  S        +S           +P+      +S +G  +   
Sbjct: 78  ACQK-------HRELFFFSTPQPHNPNESSSPLAASFHMKIPFDGRFNIISPIGGLVFVR 130

Query: 111 -HGILCLHEAPDYKYVLWNPATEEFRVTPPSPRESLPYWEAYIKPHGFGYDPITDDFKVL 169
              IL   + P++   + NP+T +  +T P P+     W        FGYDPI   FKVL
Sbjct: 131 YEQILKGRKTPEFVSAICNPSTGQ-SLTLPKPKTRKRIWGT----SHFGYDPIEKQFKVL 185


>AT3G57590.1 | Symbols:  | F-box and associated interaction
           domains-containing protein | chr3:21330182-21331396
           REVERSE LENGTH=404
          Length = 404

 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 55/190 (28%), Positives = 79/190 (41%), Gaps = 31/190 (16%)

Query: 3   IPDDVAFTILSKLPLKSLKRFTLVHKSWVDLHEIPYFMSMFRSNFLSKHQSYYDDTSLLV 62
           IP+D+   I S+LP KS+  F  + K W  +   P F  +F +   ++ +       LL 
Sbjct: 4   IPNDLILEIFSRLPAKSVIGFRTLSKHWASMLRSPVFTELFLTRSSNRPR-------LLF 56

Query: 63  LQQQPSDGTHCHGSLFLLSGDNFEKTVKSDWLPYQEH--GRFLSVLGSGIHGILCLHE-- 118
             ++  +       LF  S     +  KS  L Y     G     + S + G+LC  +  
Sbjct: 57  AAERNGEW------LFFSSPQPQNRYEKSSHLDYHTKFSGDVSRFICSYVSGLLCFPDLW 110

Query: 119 -APDYKYVLWNPATEEFRVTPPSPRESLPYWEAYIKPHGF-GYDPITDDFKVLRHITFYP 176
            + D   V+ NP T  +        ESLP    Y    GF G+DPI   FKVL     YP
Sbjct: 111 LSKDASPVICNPTTGMY--------ESLPDLMRYKNARGFLGFDPIGKQFKVLSEA--YP 160

Query: 177 DYDYGQDEYH 186
             D  Q E+H
Sbjct: 161 FSD--QREHH 168


>AT1G32420.1 | Symbols:  | F-box and associated interaction
           domains-containing protein | chr1:11701995-11702903
           FORWARD LENGTH=302
          Length = 302

 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/173 (26%), Positives = 68/173 (39%), Gaps = 26/173 (15%)

Query: 1   MAIPDDVAFTILSKLPLKSLKRFTLVHKSWVDLHEIPYFMSMFRSNFLSKHQSYYDDTSL 60
           + IP D+   IL KLP KSL RF  V K W+ +              +S  + + D    
Sbjct: 35  VNIPLDLTVEILKKLPAKSLLRFQCVSKQWLSI--------------ISSRRDFIDSIVT 80

Query: 61  LVLQQ-QPSDGTHCHGSLFLLSGDNFEKTVKSDWLPYQEHGRFLSVLGSGIH---GILCL 116
             L Q  P D         L  G +F   + S   P       L+   S  H   G++C 
Sbjct: 81  RSLTQPPPRDIKLIFHHQVLYPGPHF--FIFSSTYPQNTDKESLTTRASSYHYVRGLICC 138

Query: 117 HEAPDYKYVLWNPATEEFRVTPPSPRESLPYWEAYIKPHGFGYDPITDDFKVL 169
                    ++NP T ++   P + R        YI+   FGYDP+ + +KV+
Sbjct: 139 WSHCPTTVDIYNPTTRQYYTVPDTNRYQ------YIETCFFGYDPVENQYKVM 185


>AT3G10240.1 | Symbols:  | F-box and associated interaction
           domains-containing protein | chr3:3166698-3167867
           FORWARD LENGTH=389
          Length = 389

 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 45/190 (23%), Positives = 78/190 (41%), Gaps = 40/190 (21%)

Query: 3   IPDDVAFTILSKLPLKSLKRFTLVHKSWVDLHEIPYFMSMFRSN-----FLSKHQSYYDD 57
           IP D+   IL +LP KS+ RF  V K W  +   PYF+++  +         K    +  
Sbjct: 27  IPLDLVSEILLRLPEKSVARFRCVSKPWSSITTEPYFINLLTTRSPRLLLCFKANEKFFV 86

Query: 58  TSLLVLQQQPSDGTHCHGSLFLLSGDNFEKTVKSDWLPYQEHGRFLSVLGSGIHGILCLH 117
           +S+   +Q        H    L+   + E + + ++ P  E           ++G++C  
Sbjct: 87  SSIPQHRQTFETWNKSHSYSQLIDRYHMEFSEEMNYFPPTE----------SVNGLICFQ 136

Query: 118 EAPDYKYVLWNPATEEFRVTPPSPRESLPYWEAYIKPHG--------FGYDPITDDFKVL 169
           E+   + ++WNP+T +  + P              KP+G         GYDP+    KV+
Sbjct: 137 ESA--RLIVWNPSTRQLLILP--------------KPNGNSNDLTIFLGYDPVEGKHKVM 180

Query: 170 RHITFYPDYD 179
             + F   YD
Sbjct: 181 -CMEFSATYD 189


>AT1G47340.1 | Symbols:  | F-box and associated interaction
           domains-containing protein | chr1:17354123-17356494
           REVERSE LENGTH=459
          Length = 459

 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 53/184 (28%), Positives = 80/184 (43%), Gaps = 27/184 (14%)

Query: 1   MAIPDDVAFTILSKLPLKSLKRFTLVHKSWVDLHEIPYFMSMF--RSN--------FLSK 50
           +++P ++   IL +LP KS+KRF  V K W  +   P+F  +F  RS+         + K
Sbjct: 35  VSLPKELILEILKRLPAKSVKRFHCVSKQWASMLSCPHFRELFLTRSSSAQPRLLFAIEK 94

Query: 51  HQSYYDDTSLLVLQQQPSDGTHCHGSLFLLSGDNFEKTVKSDWLPYQEHGRFLSV-LGSG 109
           H  +    SL  L Q+ +       S  +++ +   K      L Y  H R  S    SG
Sbjct: 95  HNQW----SLFSLPQRLTPYEKSSSSSVVVTPEFHMKFPPDGMLIYPRHDRRFSFGYASG 150

Query: 110 I---HGILCLHEAPDYKYVLWNPATEEFRVTPPSPRESLPYWEAYIKPHG-FGYDPITDD 165
           +   +G+       D   V+ NP T  +         SLP+ E Y K    FG+DPI   
Sbjct: 151 LMYFYGMWINEHDYDGVPVICNPLTGRY--------ASLPFLERYRKAFSFFGFDPIEKQ 202

Query: 166 FKVL 169
           +KVL
Sbjct: 203 YKVL 206


>AT1G12870.1 | Symbols:  | F-box and associated interaction
           domains-containing protein | chr1:4387129-4389110
           REVERSE LENGTH=416
          Length = 416

 Score = 49.3 bits (116), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 68/344 (19%), Positives = 132/344 (38%), Gaps = 47/344 (13%)

Query: 2   AIPDDVAFTILSKLPLKSLKRFTLVHKSWVDLHEIPYFMSMFRSNFLSKHQSYYDDTSLL 61
           ++PDDV   I  KLP+K+L RF  + K W    E  YF    + +     +S+ D   ++
Sbjct: 32  SLPDDVVEEIFLKLPVKALMRFKSLSKQWRSTLESCYFS---QRHLKIAERSHVDHPKVM 88

Query: 62  VLQQQPSDGTHCHGSLFLLSGDNFEKTVKSDWLPYQEHGRFLSVLGSGIHGILCLHEAPD 121
           ++ ++ +           L   +F  +   ++     H  + S       GI C+H    
Sbjct: 89  IITEKWNPDIEISFRTISLESVSFLSSALFNFPRGFHHPIYAS---ESCDGIFCIHSPKT 145

Query: 122 YKYVLWNPATEEFRVTPPSPRESLPYWEAYIKPHGFGYDPITDDFKVLRHITFYPDYDYG 181
               + NPAT  FR  PP+       ++ ++       D + D   V  H+ F    DY 
Sbjct: 146 QDIYVVNPATRWFRQLPPA------RFQIFMHKLNPTLDTLRDMIPV-NHLAFVKATDYK 198

Query: 182 QDEYHSGVXXXXXXXXXXXXXXXXXPMISDHLPSRIPQPFWEIYSLRSNSWRKLDADMPI 241
               ++                      SD   SR+ +   E++  ++N+WR L   +P 
Sbjct: 199 LVWLYN----------------------SD--ASRVTK--CEVFDFKANAWRYLTC-IPS 231

Query: 242 TGGGPDKGGDTYMNGVCNWLSYGRIYDYGFDTHLVSFNFSNEIFYTTPLPLDLADTR-VQ 300
                D+   +  NG   W +      Y  +  +++ +   EIF   P P  +A +    
Sbjct: 232 YRIYHDQKPAS-ANGTLYWFTET----YNAEIKVIALDIHTEIFRLLPKPSLIASSEPSH 286

Query: 301 TYLAVLNESIALISMHEETTTFHISILGEQGVKESWTKLFIVGL 344
             + +++ S+ +     +       I   +  +++W K++ + L
Sbjct: 287 IDMCIIDNSLCMYETEGDKKIIQ-EIWRLKSSEDAWEKIYTINL 329


>AT1G47765.1 | Symbols:  | F-box and associated interaction
           domains-containing protein | chr1:17574906-17576092
           REVERSE LENGTH=385
          Length = 385

 Score = 48.9 bits (115), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 43/177 (24%), Positives = 74/177 (41%), Gaps = 39/177 (22%)

Query: 2   AIPDDVAFTILSKLPLKSLKRFTLVHKSWVDLHEIPYFMSMFRSN---------FLSKHQ 52
           ++P D+   IL +LP KS+ RF  V K W+ +   PYF+++F +          F+   +
Sbjct: 25  SLPLDLTSEILLRLPEKSIARFRCVSKLWLSITTDPYFINLFETRSPRPSLLVCFIENDK 84

Query: 53  SYYDDTSLLVLQQQPSDGTHCHGSLFLLSGDNFEKTVKSDWLPYQEHGRFLSVLGSGIHG 112
            +       +   Q S  ++    LF++   N++K V                      G
Sbjct: 85  LFVSSIPQHLHSLQNSKRSYSSSQLFIVIIWNYQKDV----------------------G 122

Query: 113 ILCLHEAPDYKYVLWNPATEEFRVTPPSPRESLPYWEAYIKPHGFGYDPITDDFKVL 169
           ++C   +     ++WNP+  +  +T P PR S   W   I     GYDP+    KV+
Sbjct: 123 LICFKTSK--MPIVWNPSKRQL-ITLPIPRLS---WNNIIV--FLGYDPVEGKHKVM 171


>AT1G47730.1 | Symbols:  | F-box and associated interaction
           domains-containing protein | chr1:17563931-17565106
           REVERSE LENGTH=391
          Length = 391

 Score = 48.5 bits (114), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 40/172 (23%), Positives = 68/172 (39%), Gaps = 25/172 (14%)

Query: 3   IPDDVAFTILSKLPLKSLKRFTLVHKSWVDLHEIPYFMSMFRSN-----FLSKHQSYYDD 57
           +P D+   I S+LP KS+ RF  V K W  +   PYF + F +      F  +   ++  
Sbjct: 25  LPLDLTSEIFSRLPAKSVVRFRCVSKLWSSITTAPYFTNSFETRPNLMFFFKEGDKFF-- 82

Query: 58  TSLLVLQQQPSDGTHCHGSLFLLSGDNFEKTVKSDWLPYQEHGRFLSVLGSGIHGILCLH 117
             +  + Q   +    +        D++  T              ++ L   +HG++C  
Sbjct: 83  --VFTIPQHNQNPNESYSYSSSEIIDSYHTTYPKRCC--------VTTLTESVHGLICFR 132

Query: 118 EAPDYKYVLWNPATEEFRVTPPSPRESLPYWEAYIKPHGFGYDPITDDFKVL 169
           +A     ++WNP   +F+     P   L      IK    GYDP+    KV+
Sbjct: 133 KAAT--PIIWNPTMRKFK-----PLRKLDERWKNIKV-SLGYDPVDGKHKVV 176