Miyakogusa Predicted Gene

Lj0g3v0242619.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj0g3v0242619.1 tr|G7IAW7|G7IAW7_MEDTR F-box/LRR-repeat protein
OS=Medicago truncatula GN=MTR_1g108820 PE=2 SV=1,41.29,7e-18,
,gene.g18953.t1.1
         (453 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC76992 similar to UniRef100_A0KCX4 Cluster: Binding-pr...   161   5e-39
gnl|LJGI|TC77884                                                       98   6e-20

>gnl|LJGI|TC76992 similar to UniRef100_A0KCX4 Cluster: Binding-protein-dependent
           transport systems inner membrane component; n=2;
           Burkholderia cenocepacia|Rep: Binding-protein-dependent
           transport systems inner membrane component -
           Burkholderia cenocepacia (strain HI2424), partial (5%)
          Length = 1195

 Score =  161 bits (81), Expect = 5e-39
 Identities = 148/169 (87%), Gaps = 1/169 (0%)
 Strand = Plus / Plus

                                                                       
Query: 271 atggagcgtaggcacaatgacaaatacatcaattcctactacagagaaatgcctgtgttt 330
           ||||||||||||  |  |||||||| |||||| |||||||||||||||||||| |  |||
Sbjct: 492 atggagcgtaggttccctgacaaatgcatcaactcctactacagagaaatgcccgc-ttt 550

                                                                       
Query: 331 cgtaacttaatgagccttaagctaacctttcttcacttccctagctgggttcgtgtaatg 390
           || || ||||| | |||||||||||||||| ||  ||||||| |||||||| ||||||||
Sbjct: 551 cgaaatttaatcaaccttaagctaacctttgtttgcttccctggctgggttggtgtaatg 610

                                                            
Query: 391 gaagtgctcccttattgtcccaagcttcaatctcttgccattaaaaagg 439
           |||| ||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct: 611 gaagcgctcccttattgtcccaagcttcaaactcttgccattgaaaagg 659



 Score = 81.8 bits (41), Expect = 3e-15
 Identities = 62/69 (89%)
 Strand = Plus / Plus

                                                                       
Query: 76  caaagggaagatttgaagaaaattcttaatgggagtcccaatgttgaggatttgattgta 135
           ||||| || ||| |||||||||||||||||||| |||||| |||||||||||| ||||||
Sbjct: 375 caaagtgacgatgtgaagaaaattcttaatgggtgtcccattgttgaggatttaattgta 434

                    
Query: 136 ttaggtccc 144
           |||| ||||
Sbjct: 435 ttagctccc 443


>gnl|LJGI|TC77884 
          Length = 548

 Score = 97.6 bits (49), Expect = 6e-20
 Identities = 61/65 (93%)
 Strand = Plus / Plus

                                                                       
Query: 374 gctgggttcgtgtaatggaagtgctcccttattgtcccaagcttcaatctcttgccatta 433
           |||||||| |||||||||||||||||||||||||||||||||||||| |||||| |||| 
Sbjct: 1   gctgggttggtgtaatggaagtgctcccttattgtcccaagcttcaaactcttgacattg 60

                
Query: 434 aaaag 438
           |||||
Sbjct: 61  aaaag 65