Miyakogusa Predicted Gene
- Lj0g3v0234229.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0234229.1 tr|G7JRF4|G7JRF4_MEDTR ATP-dependent DNA helicase
PIF1 OS=Medicago truncatula GN=MTR_4g036250 PE=4
S,60.16,0,UNCHARACTERIZED,NULL; seg,NULL,CUFF.15325.1
(263 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr8g447120.1 | AT hook motif protein, putative | LC | chr8:18... 184 5e-47
Medtr0048s0090.1 | hypothetical protein | LC | scaffold0048:3610... 153 1e-37
Medtr2g060870.1 | hypothetical protein | LC | chr2:25823903-2582... 122 2e-28
Medtr8g039210.1 | replication factor-A carboxy-terminal domain p... 111 6e-25
Medtr2g036820.1 | hypothetical protein | LC | chr2:15942832-1594... 103 2e-22
Medtr0077s0060.1 | hypothetical protein | HC | scaffold0077:3877... 92 3e-19
Medtr2g038740.1 | transmembrane protein, putative | LC | chr2:16... 87 2e-17
Medtr0003s0430.1 | hypothetical protein | LC | scaffold0003:2134... 78 8e-15
Medtr5g077490.1 | AT hook motif protein, putative | LC | chr5:33... 77 1e-14
Medtr1g106780.1 | hypothetical protein | LC | chr1:48084502-4808... 74 1e-13
Medtr3g056470.1 | hypothetical protein | LC | chr3:22498968-2249... 69 6e-12
Medtr8g066430.1 | AT hook motif protein, putative | LC | chr8:27... 63 3e-10
Medtr3g107750.1 | hypothetical protein | LC | chr3:49719263-4971... 58 1e-08
Medtr4g104400.1 | hypothetical protein | LC | chr4:43197409-4319... 55 9e-08
Medtr1g050372.1 | hypothetical protein | LC | chr1:19294794-1929... 54 2e-07
Medtr0003s0280.1 | hypothetical protein | LC | scaffold0003:1273... 50 3e-06
>Medtr8g447120.1 | AT hook motif protein, putative | LC |
chr8:18486456-18487766 | 20130731
Length = 258
Score = 184 bits (468), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 96/214 (44%), Positives = 129/214 (60%), Gaps = 27/214 (12%)
Query: 20 CGYCNSIMWYEERSEKSRQPLNPEFSICCMRGKVDXXXXXXXXXXXXXXISGVDPRSKNF 79
C C ++MWY+ER +K P P FS+CCM G + KN
Sbjct: 28 CKQCGAMMWYDERIQKPYNPKKPRFSLCCMDGNI-----------------------KNG 64
Query: 80 KENIRAYNSLFSFTSLGGKIQTGLNDGNGPPNFILNGQNYHRMGSLIPPEGAPPKFAQLY 139
K N + +FSFTSLGGKI T +NDGN PP FI+NG+NYH+MGSL+P +G+ PKFAQLY
Sbjct: 65 KINT---SMMFSFTSLGGKINTSMNDGNAPPMFIMNGENYHQMGSLLPQDGSQPKFAQLY 121
Query: 140 IYDTQNETDNRMRHFRSDERRNVLDPSLVKDLTEMIDIHNPVAKLFRRVRDFANHNEGSN 199
IYDT NE NRM D+ + L+ S+V+D+ +++D NP A+ +R VRD N+ N
Sbjct: 122 IYDTNNEVANRMSVVGMDKDVSSLNSSIVEDIKQILDSCNPYAQAYRMVRDKLRTNDMPN 181
Query: 200 FYLRLFRRRNKDP-RVYNLLTSDEVAGLIVGDIE 232
LR+ +R +D R YN+ T+ E A LIVGD +
Sbjct: 182 LKLRILGKRGRDARRRYNIPTTSEAAALIVGDYD 215
>Medtr0048s0090.1 | hypothetical protein | LC |
scaffold0048:36104-39426 | 20130731
Length = 568
Score = 153 bits (387), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 74/181 (40%), Positives = 106/181 (58%)
Query: 3 ASAEVEELLDFGDATYTCGYCNSIMWYEERSEKSRQPLNPEFSICCMRGKVDXXXXXXXX 62
+ E E L+ G TY C C ++MWYEER K +P+ P FS+CC++G+V
Sbjct: 387 SGGEESEYLNIGGPTYFCQKCGAMMWYEERVPKHTRPVIPRFSMCCLKGRVVLPPYEHLP 446
Query: 63 XXXXXXISGVDPRSKNFKENIRAYNSLFSFTSLGGKIQTGLNDGNGPPNFILNGQNYHRM 122
D S+ F NIR++NS+F+FTS+GG++ N+G PP F++NG+NYH +
Sbjct: 447 QFLHDMYHKHDRVSRFFMNNIRSFNSMFAFTSMGGRVNNEQNNGKAPPMFVMNGENYHLI 506
Query: 123 GSLIPPEGAPPKFAQLYIYDTQNETDNRMRHFRSDERRNVLDPSLVKDLTEMIDIHNPVA 182
GSL+P PPKFAQLYIY T NE NRM D+ L ++ +L E++D +NP
Sbjct: 507 GSLLPMPEKPPKFAQLYIYHTDNEISNRMAAVSMDDGHFDLKNMIIGNLKELLDEYNPYV 566
Query: 183 K 183
+
Sbjct: 567 Q 567
>Medtr2g060870.1 | hypothetical protein | LC |
chr2:25823903-25821879 | 20130731
Length = 460
Score = 122 bits (307), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 69/170 (40%), Positives = 102/170 (60%), Gaps = 7/170 (4%)
Query: 97 GKIQTGLNDGNGPPNFILNGQNYHRMGSLIPPEGAPPKFAQLYIYDTQNETDNRMRHFRS 156
K + N+G GPP + GQ HR+GSL+P +G PP+F QLYIYDT+NE NR++ R+
Sbjct: 227 SKFDSSFNNGKGPPTVRIQGQFCHRIGSLLPKDGEPPRFGQLYIYDTKNEIQNRIQGVRN 286
Query: 157 DERRNVLDPSLVKDLTEMIDIHNPVAKLFRRVRDFANHN-EGSNFYLRLFRRRNKDPRVY 215
++ +DP++V++L++M+ N AK F+ R+ N + + LRL R D RVY
Sbjct: 287 NKN---IDPTIVENLSKMLYEKNTHAKCFKMARERLNSDIHVPDLKLRLISDRKTDGRVY 343
Query: 216 NLLTSDEVAGLIVGDIENLEAGRDIIVKKQSEWLE--TRYRSSYQMQKVP 263
NL T EVA LI GD+ + E RDII++ Q L+ + +SY + P
Sbjct: 344 NLPTVSEVAALIAGDVGDAEE-RDIIIQGQGGQLQRIDEFHASYLAYQYP 392
>Medtr8g039210.1 | replication factor-A carboxy-terminal domain
protein | LC | chr8:14593466-14588967 | 20130731
Length = 678
Score = 111 bits (278), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 68/220 (30%), Positives = 101/220 (45%), Gaps = 28/220 (12%)
Query: 7 VEELLDFGDATYTCGYCNSIMWYEERSEKSRQPLNPEFSICCMRGKVDXXXXXXXXXXXX 66
V+ +D G + C C S MW ER++K +P P FS+CC++G V
Sbjct: 274 VQTYMDLGHPNFECEKCGSTMWSNERADKPYRPRKPTFSLCCLKGDVSLEFLEQPPDYLK 333
Query: 67 XXISGVDPR-SKNFKENIRAYNSLFSFTSLGGKIQTGLNDGNGPPNFILNGQNYHRMGSL 125
++ R S F+E IRAYNS+F+FT++G KI +N G
Sbjct: 334 ELLAYKGGRHSVKFREKIRAYNSIFAFTAMGAKIDNTMNLRPG----------------- 376
Query: 126 IPPEGAPPKFAQLYIYDTQNETDNRMRHFRSDERRNVLDPSLVKDLTEMIDIHNPVAKLF 185
LY++DT+NE NR+ + L +V+ L +M+D++N VAKLF
Sbjct: 377 ----------LYLYVHDTENEIQNRLSSLNGGKIARDLAADIVRRLKDMLDMNNSVAKLF 426
Query: 186 RRVRDFANHNEGSNFYLRLFRRRNKDPRVYNLLTSDEVAG 225
R RD + E +RL R+ D R Y T+ E+
Sbjct: 427 RMARDRLSVPENKEVRIRLIGTRSNDSRQYTAPTATEIVA 466
>Medtr2g036820.1 | hypothetical protein | LC |
chr2:15942832-15941387 | 20130731
Length = 238
Score = 103 bits (256), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 54/153 (35%), Positives = 75/153 (49%), Gaps = 25/153 (16%)
Query: 2 YASAEVEELLDFGDATYTCGYCNSIMWYEERSEKSRQPLNPEFSICCMRGKVDXXXXXXX 61
+ EV++ LD GD C CN+ +W E S++ + SICCM+GK+
Sbjct: 99 FQHGEVQDYLDIGDMDSVCRRCNAQVWLGECSQRRHSTPTIDASICCMKGKITLPNMIEP 158
Query: 62 XXXXXXXISGVDPRSKNFKENIRAYNSLFSFTSLGGKIQTGLNDGNGPPNFILNGQNYHR 121
+GVDPRS +F G P+F+++GQNYHR
Sbjct: 159 PPLLRGLFNGVDPRSAHFI-------------------------GPDSPHFVISGQNYHR 193
Query: 122 MGSLIPPEGAPPKFAQLYIYDTQNETDNRMRHF 154
+GSL+ +G PKF QLY YDT+NE NR+ HF
Sbjct: 194 IGSLLLADGQAPKFCQLYTYDTENELVNRLSHF 226
>Medtr0077s0060.1 | hypothetical protein | HC |
scaffold0077:38771-37419 | 20130731
Length = 323
Score = 92.4 bits (228), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 69/198 (34%), Positives = 93/198 (46%), Gaps = 13/198 (6%)
Query: 45 SICCMRGKVDXXXXXXXXXXXXXXISGVDPRSKNFKENIRAYNSLFSFTSLGGKI-QTGL 103
SICC G S ++F++NIR YN + SFTSLG I +T
Sbjct: 10 SICCKNGNA-TVTQVAAPEELRQLFSDTTIEGRHFRQNIRGYNHVMSFTSLGVHIDETMH 68
Query: 104 NDGNGPPNFILNGQNYHRMGSLIPPEGAPPKFAQLYIYDTQNETDNRMRHFRSDERRNVL 163
G F G YH++G P +G+ P+F QLYIYDT NE NRM L
Sbjct: 69 ATSRGIYTFRAQGSIYHKIGGFHPNQGSRPRFLQLYIYDTDNELQNRM------IENPQL 122
Query: 164 DPSLVKDLTEMIDIHNPVAKLFRRVRDFANHNEGSNFYLRLFRRRNKDPRVYNLLTSDEV 223
+ +V+ L M+ +NP R++ N +E L + R + YNL ++ EV
Sbjct: 123 NQDVVRRLQNMLYQYNPFVHNLRQLALQPNVHECR----LLIKERPSNQPQYNLPSASEV 178
Query: 224 AGLIV-GDIENLEAGRDI 240
A +IV GD LE GRDI
Sbjct: 179 AAIIVGGDDVTLERGRDI 196
>Medtr2g038740.1 | transmembrane protein, putative | LC |
chr2:16965530-16968232 | 20130731
Length = 678
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 38/72 (52%), Positives = 53/72 (73%)
Query: 80 KENIRAYNSLFSFTSLGGKIQTGLNDGNGPPNFILNGQNYHRMGSLIPPEGAPPKFAQLY 139
KEN+R +NS+F+FTS+ G I +N+G PP F+++G+NY ++GSL+ PKFAQLY
Sbjct: 258 KENMRLFNSMFAFTSMEGDIDNSMNNGKAPPIFVIHGENYPQIGSLLVRPENDPKFAQLY 317
Query: 140 IYDTQNETDNRM 151
+YDT NE NRM
Sbjct: 318 VYDTDNEIKNRM 329
>Medtr0003s0430.1 | hypothetical protein | LC |
scaffold0003:213419-210869 | 20130731
Length = 437
Score = 78.2 bits (191), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 64/226 (28%), Positives = 96/226 (42%), Gaps = 46/226 (20%)
Query: 20 CGYCNSIMWYEERSEKSRQPLNPEFSICCMRGKVDXXXXXXXXXXXXXXISGVDPRSKNF 79
C CN ++Y+E +CC G S ++F
Sbjct: 204 CRQCNGKLFYKETQ-----------YMCCKNGNA-TVTQVAAPEELRQLFSDTTIAGRHF 251
Query: 80 KENIRAYNSLFSFTSLGGKI-QTGLNDGNGPPNFILNGQNYHRMGSLIPPEGAPPKFAQL 138
++NI+ YN + SFTSLG I +T G F G +H++G P +G+ P+F QL
Sbjct: 252 RQNIKGYNHVMSFTSLGVHIDETMHATSRGIYTFRAQGSIFHKIGGFHPNQGSRPRFLQL 311
Query: 139 YIYDTQNETDNRMRHFRSDERRNVLDPSLVKDLTEM-IDIHNPVAKLFRRVRDFANHNEG 197
YIYDT NE NRM + +P L + + + ++H +L
Sbjct: 312 YIYDTDNELQNRM----------IENPQLNQAVLALQSNVHE--CRL------------- 346
Query: 198 SNFYLRLFRRRNKDPRVYNLLTSDEVAGLIV-GDIENLEAGRDIIV 242
L + R + YNL ++ +VA +IV GD LE GRDI +
Sbjct: 347 ------LIKERLSNQPQYNLPSASQVAAIIVGGDDVTLERGRDINI 386
>Medtr5g077490.1 | AT hook motif protein, putative | LC |
chr5:33074217-33074829 | 20130731
Length = 148
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 37/75 (49%), Positives = 49/75 (65%), Gaps = 3/75 (4%)
Query: 97 GKIQTGLNDGNGPPNFILNGQNYHRMGSLIPPEGAPPKFAQLYIYDTQNETDNRMRHFRS 156
GKI NDG+G F+L GQNYH MGS++P + PKFAQ+YIYDTQNE+ N+ + +
Sbjct: 3 GKIDRTTNDGDGAIYFVLRGQNYHNMGSMMPESDSTPKFAQIYIYDTQNESKNQ---YNA 59
Query: 157 DERRNVLDPSLVKDL 171
L+ SLVK +
Sbjct: 60 SNASQSLNESLVKTV 74
>Medtr1g106780.1 | hypothetical protein | LC |
chr1:48084502-48083880 | 20130731
Length = 129
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 32/56 (57%), Positives = 41/56 (73%)
Query: 97 GKIQTGLNDGNGPPNFILNGQNYHRMGSLIPPEGAPPKFAQLYIYDTQNETDNRMR 152
GKI NDG+G F+L GQNYH MGS++P + PKFAQ+YIYDTQNE+ N+ +
Sbjct: 3 GKIDHTTNDGDGVVYFVLRGQNYHNMGSMMPESDSTPKFAQIYIYDTQNESKNQYK 58
>Medtr3g056470.1 | hypothetical protein | LC |
chr3:22498968-22498359 | 20130731
Length = 127
Score = 68.6 bits (166), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 30/56 (53%), Positives = 39/56 (69%)
Query: 97 GKIQTGLNDGNGPPNFILNGQNYHRMGSLIPPEGAPPKFAQLYIYDTQNETDNRMR 152
GKI NDG+G +L GQNYH GS++P + PKFAQ+YIYDTQNE+ N+ +
Sbjct: 3 GKIDRAKNDGDGLAYIVLKGQNYHHKGSMMPESDSTPKFAQIYIYDTQNESKNQYK 58
>Medtr8g066430.1 | AT hook motif protein, putative | LC |
chr8:27616321-27616948 | 20130731
Length = 112
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 55/97 (56%)
Query: 135 FAQLYIYDTQNETDNRMRHFRSDERRNVLDPSLVKDLTEMIDIHNPVAKLFRRVRDFANH 194
+ QLY++DT NE NR+ + + LD ++V++L ++D +N + KLFR RD +
Sbjct: 12 YTQLYVHDTDNEVQNRLCSLKEGKSAQALDVNIVQNLKVILDENNKIVKLFRMARDRLSA 71
Query: 195 NEGSNFYLRLFRRRNKDPRVYNLLTSDEVAGLIVGDI 231
+ ++RLF R+ + R Y + T+ E+A D+
Sbjct: 72 PDAKENHIRLFDTRSNELRQYTIPTTTEIAKTFPSDL 108
>Medtr3g107750.1 | hypothetical protein | LC |
chr3:49719263-49718147 | 20130731
Length = 198
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 30/46 (65%)
Query: 9 ELLDFGDATYTCGYCNSIMWYEERSEKSRQPLNPEFSICCMRGKVD 54
+ D G+ + C +C +MWYEER K R PEFS+CCM+G+++
Sbjct: 49 DYFDVGEPAFVCRWCKEVMWYEERVSKHRNTSIPEFSMCCMQGRIE 94
>Medtr4g104400.1 | hypothetical protein | LC |
chr4:43197409-43196215 | 20130731
Length = 167
Score = 54.7 bits (130), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 28/42 (66%)
Query: 13 FGDATYTCGYCNSIMWYEERSEKSRQPLNPEFSICCMRGKVD 54
G+ + C +C +IMWYEER K NPEFS+CCM+G ++
Sbjct: 118 VGELRFICPWCGAIMWYEERVSKHTDTSNPEFSLCCMQGIIE 159
>Medtr1g050372.1 | hypothetical protein | LC |
chr1:19294794-19294287 | 20130731
Length = 110
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 26/42 (61%)
Query: 12 DFGDATYTCGYCNSIMWYEERSEKSRQPLNPEFSICCMRGKV 53
D GD C C + MWY+ER +KSR NP+F +CC GK+
Sbjct: 63 DLGDPLMECQRCGACMWYQERKQKSRHSANPKFGLCCGDGKI 104
>Medtr0003s0280.1 | hypothetical protein | LC |
scaffold0003:127391-126831 | 20130731
Length = 148
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 30/52 (57%), Gaps = 4/52 (7%)
Query: 6 EVEELL----DFGDATYTCGYCNSIMWYEERSEKSRQPLNPEFSICCMRGKV 53
EV+ L D GD C +C ++MWY+ER +K R P+F +CC GKV
Sbjct: 88 EVDSFLQGYSDIGDPISECEHCGALMWYQERKDKYRNSSIPKFMMCCGNGKV 139