Miyakogusa Predicted Gene

Lj0g3v0233749.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0233749.2 tr|B9P5Q8|B9P5Q8_POPTR Predicted protein
(Fragment) OS=Populus trichocarpa GN=POPTRDRAFT_792242
PE=4,29.47,3e-16,L domain-like,NULL; seg,NULL; no
description,NULL,CUFF.15286.2
         (277 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G45250.1 | Symbols: RPS4 | Disease resistance protein (TIR-NB...    49   4e-06
AT5G45060.1 | Symbols:  | Disease resistance protein (TIR-NBS-LR...    48   7e-06

>AT5G45250.1 | Symbols: RPS4 | Disease resistance protein (TIR-NBS-LRR
            class) family | chr5:18321914-18326022 REVERSE
            LENGTH=1217
          Length = 1217

 Score = 48.9 bits (115), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 20/48 (41%), Positives = 32/48 (66%), Gaps = 1/48 (2%)

Query: 99   PGTEIPRWFNKQSAGSSMSMDLIPHMHDENCIGIACCAALVAHVEPTN 146
            PG E+P WF  ++ GS + + L+PH HD+   GIA C A+V+ ++P +
Sbjct: 965  PGCEVPSWFCHETVGSELEVKLLPHWHDKKLAGIALC-AVVSCLDPQD 1011


>AT5G45060.1 | Symbols:  | Disease resistance protein (TIR-NBS-LRR
           class) family | chr5:18182038-18186067 FORWARD
           LENGTH=1165
          Length = 1165

 Score = 48.1 bits (113), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 27/51 (52%)

Query: 99  PGTEIPRWFNKQSAGSSMSMDLIPHMHDENCIGIACCAALVAHVEPTNLGC 149
           PG E+P WF  ++ GS +   L+PH HD+   GIA CA +        L C
Sbjct: 939 PGCEVPSWFGHEAVGSLLQRKLLPHWHDKRLSGIALCAVVSFPDSQDQLSC 989