Miyakogusa Predicted Gene

Lj0g3v0233749.2
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj0g3v0233749.2 tr|B9P5Q8|B9P5Q8_POPTR Predicted protein
(Fragment) OS=Populus trichocarpa GN=POPTRDRAFT_792242
PE=4,29.47,3e-16,L domain-like,NULL; seg,NULL; no
description,NULL,CUFF.15286.2
         (837 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|DC599485 weakly similar to UniRef100_A7Q7Z6 Cluster: Ch...    72   6e-12
gnl|LJGI|BP057104 weakly similar to UniRef100_A7Q7H3 Cluster: Ch...    64   1e-09

>gnl|LJGI|DC599485 weakly similar to UniRef100_A7Q7Z6 Cluster: Chromosome chr18
           scaffold_61, whole genome shotgun sequence; n=1; Vitis
           vinifera|Rep: Chromosome chr18 scaffold_61, whole genome
           shotgun sequence - Vitis vinifera (Grape), partial (3%)
          Length = 497

 Score = 71.9 bits (36), Expect = 6e-12
 Identities = 81/96 (84%)
 Strand = Plus / Plus

                                                                       
Query: 27  ttttgttacactaccttctagcatcaaggaactttccaaacttctagagttgaagttgga 86
           |||||| | |||||||||||||||||||||||||||||||||| |||  |||||  ||||
Sbjct: 4   ttttgtgaaactaccttctagcatcaaggaactttccaaacttgtagttttgaacctgga 63

                                               
Query: 87  acactgtaagctgctgaaatatttaccagagctccc 122
             |||||||||  || ||||| || || ||||||||
Sbjct: 64  ctactgtaagcaactaaaatacttgcctgagctccc 99


>gnl|LJGI|BP057104 weakly similar to UniRef100_A7Q7H3 Cluster: Chromosome chr18
           scaffold_59, whole genome shotgun sequence; n=2; Vitis
           vinifera|Rep: Chromosome chr18 scaffold_59, whole genome
           shotgun sequence - Vitis vinifera (Grape), partial (3%)
          Length = 496

 Score = 63.9 bits (32), Expect = 1e-09
 Identities = 86/104 (82%)
 Strand = Plus / Minus

                                                                       
Query: 19  ggaaataattttgttacactaccttctagcatcaaggaactttccaaacttctagagttg 78
           ||||| |||||| || |||| ||| |||||||||| |||||||||||||||  ||  |||
Sbjct: 221 ggaaacaattttatttcactgcctcctagcatcaaagaactttccaaacttagagttttg 162

                                                       
Query: 79  aagttggaacactgtaagctgctgaaatatttaccagagctccc 122
           || || || |||||||||| | ||| |||||| || ||||||||
Sbjct: 161 aacttagagcactgtaagcagttgagatattttcctgagctccc 118