Miyakogusa Predicted Gene

Lj0g3v0233389.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0233389.1 tr|Q4VYF4|Q4VYF4_PEA SNF1-related protein kinase
regulatory beta subunit 1 OS=Pisum sativum GN=akin
,81.82,0,5'-AMP-activated protein kinase beta subunit,5-AMP-activated
protein kinase, beta subunit, interacti,CUFF.15254.1
         (286 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G21170.1 | Symbols: AKINBETA1 | 5'-AMP-activated protein kina...   307   6e-84
AT5G21170.2 | Symbols: AKINBETA1 | 5'-AMP-activated protein kina...   298   3e-81
AT4G16360.3 | Symbols:  | 5'-AMP-activated protein kinase beta-2...   235   3e-62
AT4G16360.1 | Symbols:  | 5'-AMP-activated protein kinase beta-2...   234   3e-62
AT4G16360.2 | Symbols:  | 5'-AMP-activated protein kinase beta-2...   229   2e-60
AT2G28060.1 | Symbols:  | 5'-AMP-activated protein kinase beta-2...    91   1e-18

>AT5G21170.1 | Symbols: AKINBETA1 | 5'-AMP-activated protein kinase
           beta-2 subunit protein | chr5:7205718-7208239 FORWARD
           LENGTH=283
          Length = 283

 Score =  307 bits (786), Expect = 6e-84,   Method: Compositional matrix adjust.
 Identities = 145/226 (64%), Positives = 176/226 (77%), Gaps = 3/226 (1%)

Query: 61  ILFGPQVPLAPLQRGNGPPFLNQIWQPELHGTISQPAEQGIPVMITWSYGGNNVAVEGSW 120
            LF PQVP+APLQR N PP  N  W  +       P EQGIP +ITW+ GGN+VAVEGSW
Sbjct: 61  FLFAPQVPVAPLQRANAPPPNNIQWN-QSQRVFDNPPEQGIPTIITWNQGGNDVAVEGSW 119

Query: 121 DNWTTRKALQRGGKDHSVLIVLPSGIYHYRFVVDGEQRYIPELPYVTDEMGHVYNLLDVN 180
           DNW +RK LQ+ GKDHS+L VLPSGIYHY+ +VDGE +YIP+LP+V DE+G+V N+LDV+
Sbjct: 120 DNWRSRKKLQKSGKDHSILFVLPSGIYHYKVIVDGESKYIPDLPFVADEVGNVCNILDVH 179

Query: 181 DYVPENPEGVSEFEAPPSPQSSYGHDFPPDEDYAKEPMAVPSQLHLTVLGVENATEVVSS 240
           ++VPENPE + EFEAPPSP  SYG   P  EDYAKEP+AVP QLHLT+LG    T +  +
Sbjct: 180 NFVPENPESIVEFEAPPSPDHSYGQTLPAAEDYAKEPLAVPPQLHLTLLGTTEETAI--A 237

Query: 241 SKPQHVVLNHVFIEKNMASKSVVALGMTHRFQSKYVTVVLYKPLKR 286
           +KPQHVVLNHVFIE+    +S+VALG+THRF+SKY+TVVLYKPL R
Sbjct: 238 TKPQHVVLNHVFIEQGWTPQSIVALGLTHRFESKYITVVLYKPLTR 283


>AT5G21170.2 | Symbols: AKINBETA1 | 5'-AMP-activated protein kinase
           beta-2 subunit protein | chr5:7205718-7208239 FORWARD
           LENGTH=320
          Length = 320

 Score =  298 bits (763), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 141/220 (64%), Positives = 172/220 (78%), Gaps = 3/220 (1%)

Query: 67  VPLAPLQRGNGPPFLNQIWQPELHGTISQPAEQGIPVMITWSYGGNNVAVEGSWDNWTTR 126
           VP+APLQR N PP  N  W  +       P EQGIP +ITW+ GGN+VAVEGSWDNW +R
Sbjct: 104 VPVAPLQRANAPPPNNIQWN-QSQRVFDNPPEQGIPTIITWNQGGNDVAVEGSWDNWRSR 162

Query: 127 KALQRGGKDHSVLIVLPSGIYHYRFVVDGEQRYIPELPYVTDEMGHVYNLLDVNDYVPEN 186
           K LQ+ GKDHS+L VLPSGIYHY+ +VDGE +YIP+LP+V DE+G+V N+LDV+++VPEN
Sbjct: 163 KKLQKSGKDHSILFVLPSGIYHYKVIVDGESKYIPDLPFVADEVGNVCNILDVHNFVPEN 222

Query: 187 PEGVSEFEAPPSPQSSYGHDFPPDEDYAKEPMAVPSQLHLTVLGVENATEVVSSSKPQHV 246
           PE + EFEAPPSP  SYG   P  EDYAKEP+AVP QLHLT+LG    T +  ++KPQHV
Sbjct: 223 PESIVEFEAPPSPDHSYGQTLPAAEDYAKEPLAVPPQLHLTLLGTTEETAI--ATKPQHV 280

Query: 247 VLNHVFIEKNMASKSVVALGMTHRFQSKYVTVVLYKPLKR 286
           VLNHVFIE+    +S+VALG+THRF+SKY+TVVLYKPL R
Sbjct: 281 VLNHVFIEQGWTPQSIVALGLTHRFESKYITVVLYKPLTR 320


>AT4G16360.3 | Symbols:  | 5'-AMP-activated protein kinase beta-2
           subunit protein | chr4:9245571-9246833 FORWARD
           LENGTH=261
          Length = 261

 Score =  235 bits (599), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 116/229 (50%), Positives = 156/229 (68%), Gaps = 3/229 (1%)

Query: 61  ILFGPQVPLAPLQRGNGPPFLNQIWQPELHGTISQPA-EQGIPVMITWSYGGNNVAVEGS 119
           ++F PQVP+ PLQR +     N  W         + + EQGIP MITW +GG  +AVEGS
Sbjct: 33  LMFAPQVPVLPLQRPDEIHIPNPSWMQSPSSLYEEASNEQGIPTMITWCHGGKEIAVEGS 92

Query: 120 WDNWTTRKALQRGGKDHSVLIVLPSGIYHYRFVVDGEQRYIPELPYVTDEMGHVYNLLDV 179
           WDNW TR  LQR GKD +++ VLPSG+Y YRF+VDG+ R+ PELP   D+ G+ +N+LD+
Sbjct: 93  WDNWKTRSRLQRSGKDFTIMKVLPSGVYEYRFIVDGQWRHAPELPLARDDAGNTFNILDL 152

Query: 180 NDYVPENPEGVSEFEAPPSPQSSYGHDFPPDEDYAKEPMAVPSQLHLTVLGVENATEVVS 239
            DYVPE+ + +S FE P SP++SY +     EDY+KEP  VP  L +T+L +  A   + 
Sbjct: 153 QDYVPEDIQSISGFEPPQSPENSYSNLLLGAEDYSKEPPVVPPHLQMTLLNLPAANPDIP 212

Query: 240 S--SKPQHVVLNHVFIEKNMASKSVVALGMTHRFQSKYVTVVLYKPLKR 286
           S   +PQHV+LNH++++K  +  SVVALG THRF +KYVTVVLYK L+R
Sbjct: 213 SPLPRPQHVILNHLYMQKGKSGPSVVALGSTHRFLAKYVTVVLYKSLQR 261


>AT4G16360.1 | Symbols:  | 5'-AMP-activated protein kinase beta-2
           subunit protein | chr4:9245662-9246833 FORWARD
           LENGTH=259
          Length = 259

 Score =  234 bits (598), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 116/229 (50%), Positives = 156/229 (68%), Gaps = 3/229 (1%)

Query: 61  ILFGPQVPLAPLQRGNGPPFLNQIWQPELHGTISQPA-EQGIPVMITWSYGGNNVAVEGS 119
           ++F PQVP+ PLQR +     N  W         + + EQGIP MITW +GG  +AVEGS
Sbjct: 31  LMFAPQVPVLPLQRPDEIHIPNPSWMQSPSSLYEEASNEQGIPTMITWCHGGKEIAVEGS 90

Query: 120 WDNWTTRKALQRGGKDHSVLIVLPSGIYHYRFVVDGEQRYIPELPYVTDEMGHVYNLLDV 179
           WDNW TR  LQR GKD +++ VLPSG+Y YRF+VDG+ R+ PELP   D+ G+ +N+LD+
Sbjct: 91  WDNWKTRSRLQRSGKDFTIMKVLPSGVYEYRFIVDGQWRHAPELPLARDDAGNTFNILDL 150

Query: 180 NDYVPENPEGVSEFEAPPSPQSSYGHDFPPDEDYAKEPMAVPSQLHLTVLGVENATEVVS 239
            DYVPE+ + +S FE P SP++SY +     EDY+KEP  VP  L +T+L +  A   + 
Sbjct: 151 QDYVPEDIQSISGFEPPQSPENSYSNLLLGAEDYSKEPPVVPPHLQMTLLNLPAANPDIP 210

Query: 240 S--SKPQHVVLNHVFIEKNMASKSVVALGMTHRFQSKYVTVVLYKPLKR 286
           S   +PQHV+LNH++++K  +  SVVALG THRF +KYVTVVLYK L+R
Sbjct: 211 SPLPRPQHVILNHLYMQKGKSGPSVVALGSTHRFLAKYVTVVLYKSLQR 259


>AT4G16360.2 | Symbols:  | 5'-AMP-activated protein kinase beta-2
           subunit protein | chr4:9245662-9246833 FORWARD
           LENGTH=258
          Length = 258

 Score =  229 bits (583), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 115/229 (50%), Positives = 156/229 (68%), Gaps = 4/229 (1%)

Query: 61  ILFGPQVPLAPLQRGNGPPFLNQIWQPELHGTISQPA-EQGIPVMITWSYGGNNVAVEGS 119
           ++F PQVP+ PLQR +     N  W         + + EQGIP MITW +GG  +AVEGS
Sbjct: 31  LMFAPQVPVLPLQRPDEIHIPNPSWMQSPSSLYEEASNEQGIPTMITWCHGGKEIAVEGS 90

Query: 120 WDNWTTRKALQRGGKDHSVLIVLPSGIYHYRFVVDGEQRYIPELPYVTDEMGHVYNLLDV 179
           WDNW T + LQR GKD +++ VLPSG+Y YRF+VDG+ R+ PELP   D+ G+ +N+LD+
Sbjct: 91  WDNWKTSR-LQRSGKDFTIMKVLPSGVYEYRFIVDGQWRHAPELPLARDDAGNTFNILDL 149

Query: 180 NDYVPENPEGVSEFEAPPSPQSSYGHDFPPDEDYAKEPMAVPSQLHLTVLGVENATEVVS 239
            DYVPE+ + +S FE P SP++SY +     EDY+KEP  VP  L +T+L +  A   + 
Sbjct: 150 QDYVPEDIQSISGFEPPQSPENSYSNLLLGAEDYSKEPPVVPPHLQMTLLNLPAANPDIP 209

Query: 240 S--SKPQHVVLNHVFIEKNMASKSVVALGMTHRFQSKYVTVVLYKPLKR 286
           S   +PQHV+LNH++++K  +  SVVALG THRF +KYVTVVLYK L+R
Sbjct: 210 SPLPRPQHVILNHLYMQKGKSGPSVVALGSTHRFLAKYVTVVLYKSLQR 258


>AT2G28060.1 | Symbols:  | 5'-AMP-activated protein kinase beta-2
           subunit protein | chr2:11950174-11950618 REVERSE
           LENGTH=114
          Length = 114

 Score = 90.5 bits (223), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 46/94 (48%), Positives = 67/94 (71%), Gaps = 2/94 (2%)

Query: 193 FEAPPSPQSSYGHDFPPDEDYAKEPMAVPSQLHLTVLGVENATEVVSSSKPQHVVLNHVF 252
           FE P SP SSY + +   ED  ++P AVP  L  ++LG + + E+  +  PQ+VVLNH++
Sbjct: 17  FEVPVSPVSSYNNVYSSTEDETRDPPAVPPHLQHSLLGNQGSMELAYA--PQNVVLNHLY 74

Query: 253 IEKNMASKSVVALGMTHRFQSKYVTVVLYKPLKR 286
           IE   A +SVVALG +HRF++K+VTVV+YKP++R
Sbjct: 75  IENRDAPRSVVALGFSHRFRTKFVTVVIYKPVQR 108