Miyakogusa Predicted Gene

Lj0g3v0215159.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0215159.1 Non Chatacterized Hit- tr|G7LCQ7|G7LCQ7_MEDTR
Putative uncharacterized protein OS=Medicago
truncatul,54.69,0.00000000002,seg,NULL; FAR1,FAR1 DNA binding
domain,CUFF.13873.1
         (113 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G06250.1 | Symbols: FRS7 | FAR1-related sequence 7 | chr3:188...    52   9e-08
AT5G18960.1 | Symbols: FRS12 | FAR1-related sequence 12 | chr5:6...    47   2e-06
AT3G07500.1 | Symbols:  | Far-red impaired responsive (FAR1) fam...    45   9e-06

>AT3G06250.1 | Symbols: FRS7 | FAR1-related sequence 7 |
           chr3:1889771-1892065 REVERSE LENGTH=764
          Length = 764

 Score = 52.0 bits (123), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 28/73 (38%), Positives = 41/73 (56%), Gaps = 5/73 (6%)

Query: 35  DSEGECYKKINELTADDIRGLEFSTEEEGCLFYHKYAQYRGFASRKDDVYKDN-DGNIVT 93
           DS+G+   K  E  A    GLEF++  E C FY  YA+  GF  R   +++   DG+I +
Sbjct: 178 DSDGQTQPKATEPYA----GLEFNSANEACQFYQAYAEVVGFRVRIGQLFRSKVDGSITS 233

Query: 94  RQLVCNKAGRRHE 106
           R+ VC+K G +H 
Sbjct: 234 RRFVCSKEGFQHP 246


>AT5G18960.1 | Symbols: FRS12 | FAR1-related sequence 12 |
           chr5:6330556-6333071 FORWARD LENGTH=788
          Length = 788

 Score = 47.4 bits (111), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 32/54 (59%), Gaps = 1/54 (1%)

Query: 54  GLEFSTEEEGCLFYHKYAQYRGFASRKDDVYKDN-DGNIVTRQLVCNKAGRRHE 106
           GLEF +  E C FY  YA+  GF  R   +++   DG+I +R+ VC++ G +H 
Sbjct: 214 GLEFGSANEACQFYQAYAEVVGFRVRIGQLFRSKVDGSITSRRFVCSREGFQHP 267


>AT3G07500.1 | Symbols:  | Far-red impaired responsive (FAR1) family
           protein | chr3:2392387-2393709 FORWARD LENGTH=217
          Length = 217

 Score = 45.1 bits (105), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 23/50 (46%), Positives = 28/50 (56%), Gaps = 1/50 (2%)

Query: 54  GLEFSTEEEGCLFYHKYAQYRGFASRKDDVYKD-NDGNIVTRQLVCNKAG 102
           G+EF +EE    FY  YA   GF  R D   +   DG +V R+LVCNK G
Sbjct: 36  GMEFESEEAAKSFYDNYATCMGFVMRVDAFRRSMRDGTVVWRRLVCNKEG 85