Miyakogusa Predicted Gene
- Lj0g3v0206009.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0206009.1 Non Chatacterized Hit- tr|I1N4Y6|I1N4Y6_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.29316
PE,39.19,2e-19,seg,NULL; RNA POLYMERASE II CTD PHOSPHATASE,NULL;
NIF,NLI interacting factor; FCP1_euk: FCP1-like ph,CUFF.13169.1
(150 letters)
Database: Glyma1.pep
75,778 sequences; 25,431,882 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Glyma02g36420.2 171 3e-43
Glyma02g36420.1 171 3e-43
Glyma17g08260.1 161 2e-40
Glyma18g51840.1 81 4e-16
Glyma08g28920.1 80 7e-16
Glyma06g47250.1 51 5e-07
Glyma06g47250.2 51 5e-07
Glyma04g15970.1 51 5e-07
>Glyma02g36420.2
Length = 430
Score = 171 bits (433), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 89/139 (64%), Positives = 96/139 (69%)
Query: 1 MKNLLCQKKXXXXXXXXXXXXXXXXXXXXXXXXXXXXTQTDSQEDISNGSLFKLECVERM 60
MK+LLC+KK QTDS D+S GSLFKLE + M
Sbjct: 131 MKSLLCRKKLYLVLDLDHTLLNSTHLAHLTSEESHLLNQTDSLRDVSKGSLFKLEHMNMM 190
Query: 61 TKLRPFVRTFLKEASKMFEMYIYTMASRRYALEVVKLLDPQGEYFNDKVISRYDGTQKHQ 120
TKLRPFVR FLKEAS+MFEMYIYTM R YALE+ KLLDPQGEYFN KVISR DGTQKHQ
Sbjct: 191 TKLRPFVRPFLKEASEMFEMYIYTMGDRPYALEMAKLLDPQGEYFNAKVISRDDGTQKHQ 250
Query: 121 KGLDVVLGPESAILILDDT 139
KGLDVVLG ESA+LILDDT
Sbjct: 251 KGLDVVLGQESAVLILDDT 269
>Glyma02g36420.1
Length = 442
Score = 171 bits (432), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 89/139 (64%), Positives = 96/139 (69%)
Query: 1 MKNLLCQKKXXXXXXXXXXXXXXXXXXXXXXXXXXXXTQTDSQEDISNGSLFKLECVERM 60
MK+LLC+KK QTDS D+S GSLFKLE + M
Sbjct: 131 MKSLLCRKKLYLVLDLDHTLLNSTHLAHLTSEESHLLNQTDSLRDVSKGSLFKLEHMNMM 190
Query: 61 TKLRPFVRTFLKEASKMFEMYIYTMASRRYALEVVKLLDPQGEYFNDKVISRYDGTQKHQ 120
TKLRPFVR FLKEAS+MFEMYIYTM R YALE+ KLLDPQGEYFN KVISR DGTQKHQ
Sbjct: 191 TKLRPFVRPFLKEASEMFEMYIYTMGDRPYALEMAKLLDPQGEYFNAKVISRDDGTQKHQ 250
Query: 121 KGLDVVLGPESAILILDDT 139
KGLDVVLG ESA+LILDDT
Sbjct: 251 KGLDVVLGQESAVLILDDT 269
>Glyma17g08260.1
Length = 401
Score = 161 bits (407), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 81/104 (77%), Positives = 87/104 (83%), Gaps = 2/104 (1%)
Query: 38 TQTDSQE--DISNGSLFKLECVERMTKLRPFVRTFLKEASKMFEMYIYTMASRRYALEVV 95
QTDS D+S GSLFKLE + MTKLRPFVR FLKEAS+MFEMYIYTM R YALE+
Sbjct: 125 NQTDSLTMIDVSKGSLFKLEHMNMMTKLRPFVRPFLKEASEMFEMYIYTMGDRPYALEMA 184
Query: 96 KLLDPQGEYFNDKVISRYDGTQKHQKGLDVVLGPESAILILDDT 139
KLLDPQGEYFN KVISR DGTQKHQKGLDVVLG ESA++ILDDT
Sbjct: 185 KLLDPQGEYFNAKVISRDDGTQKHQKGLDVVLGQESAVIILDDT 228
>Glyma18g51840.1
Length = 1068
Score = 81.3 bits (199), Expect = 4e-16, Method: Composition-based stats.
Identities = 43/100 (43%), Positives = 65/100 (65%), Gaps = 8/100 (8%)
Query: 51 LFKLECVERMTKLRPFVRTFLKEASKMFEMYIYTMASRRYALEVVKLLDPQGEYFNDKVI 110
LF+ + TKLRP + FL++ASK++E+++YTM ++ YA E+ K+LDP+G F +VI
Sbjct: 797 LFRFPHMGMWTKLRPGIWNFLEKASKLYELHLYTMGNKLYATEMAKVLDPKGLLFAGRVI 856
Query: 111 SRYDGTQK--------HQKGLDVVLGPESAILILDDTHRV 142
SR D T K L+ VLG ES+++I+DD+ RV
Sbjct: 857 SRGDDTDSVDGEERAPKSKDLEGVLGMESSVVIIDDSVRV 896
>Glyma08g28920.1
Length = 1165
Score = 80.1 bits (196), Expect = 7e-16, Method: Composition-based stats.
Identities = 43/100 (43%), Positives = 65/100 (65%), Gaps = 8/100 (8%)
Query: 51 LFKLECVERMTKLRPFVRTFLKEASKMFEMYIYTMASRRYALEVVKLLDPQGEYFNDKVI 110
LF+ + TKLRP + FL++ASK++E+++YTM ++ YA E+ K+LDP+G F +VI
Sbjct: 894 LFRFPHMGMWTKLRPGIWNFLEKASKLYELHLYTMGNKLYATEMAKVLDPKGVLFAGRVI 953
Query: 111 SRYDGTQK--------HQKGLDVVLGPESAILILDDTHRV 142
SR D T K L+ VLG ES+++I+DD+ RV
Sbjct: 954 SRGDDTDSVDGEERVPKSKDLEGVLGMESSVVIIDDSVRV 993
>Glyma06g47250.1
Length = 467
Score = 50.8 bits (120), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 54/89 (60%), Gaps = 4/89 (4%)
Query: 64 RPFVRTFLKEASKMFEMYIYTMASRRYALEVVKLLDPQGEYFNDKVISRYDGTQKHQKGL 123
RPF++ FL + S+MFE+ I+T + R YA ++ +LDP ++F+ +V R T K + +
Sbjct: 336 RPFLQEFLAKVSEMFEIIIFTASKRMYAETLLDVLDPDKKFFSRRVC-RESCTWKDRCCV 394
Query: 124 D--VVLGPESA-ILILDDTHRVSSFLVSD 149
VLG + A + I+D+T V F V++
Sbjct: 395 KDLTVLGIDLAKVCIIDNTPEVFRFQVNN 423
>Glyma06g47250.2
Length = 270
Score = 50.8 bits (120), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 54/89 (60%), Gaps = 4/89 (4%)
Query: 64 RPFVRTFLKEASKMFEMYIYTMASRRYALEVVKLLDPQGEYFNDKVISRYDGTQKHQKGL 123
RPF++ FL + S+MFE+ I+T + R YA ++ +LDP ++F+ +V R T K + +
Sbjct: 139 RPFLQEFLAKVSEMFEIIIFTASKRMYAETLLDVLDPDKKFFSRRV-CRESCTWKDRCCV 197
Query: 124 D--VVLGPESA-ILILDDTHRVSSFLVSD 149
VLG + A + I+D+T V F V++
Sbjct: 198 KDLTVLGIDLAKVCIIDNTPEVFRFQVNN 226
>Glyma04g15970.1
Length = 381
Score = 50.8 bits (120), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 55/89 (61%), Gaps = 4/89 (4%)
Query: 64 RPFVRTFLKEASKMFEMYIYTMASRRYALEVVKLLDPQGEYFNDKVISRYDGTQKHQKGL 123
RPF++ FL + S+MFE+ I+T + R YA ++ +LDP ++F+ +V R T K ++ +
Sbjct: 250 RPFLQEFLVKVSEMFEIIIFTASKRMYAETLLDVLDPDKKFFSRRVY-RESCTWKDRRCV 308
Query: 124 D--VVLGPESA-ILILDDTHRVSSFLVSD 149
VLG + A + I+D+T V F V++
Sbjct: 309 KDLTVLGIDLAKVCIIDNTPEVFRFQVNN 337