Miyakogusa Predicted Gene

Lj0g3v0202659.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0202659.1 tr|G8A222|G8A222_MEDTR Low-temperature-induced 65
kDa protein OS=Medicago truncatula
GN=MTR_128s0016,36.65,0.000000000000008,seg,NULL;
CAP160,CAP160,CUFF.12890.1
         (680 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G52300.2 | Symbols: RD29B, LTI65 | CAP160 protein | chr5:2123...    92   1e-18
AT5G52300.1 | Symbols: RD29B, LTI65 | CAP160 protein | chr5:2123...    92   1e-18
AT4G25580.1 | Symbols:  | CAP160 protein | chr4:13056320-1305865...    91   3e-18

>AT5G52300.2 | Symbols: RD29B, LTI65 | CAP160 protein |
           chr5:21237205-21239404 FORWARD LENGTH=618
          Length = 618

 Score = 92.0 bits (227), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 58/149 (38%), Positives = 87/149 (58%), Gaps = 22/149 (14%)

Query: 415 ESSQGSYTEKISSATSAIADKAIGAKNTVASKLGFGESSESGENAL-RTQEEEKNEGFSS 473
           E+   +YTE+++SATSAI +KAI AKN VASKLG+     +GEN   +++   K+E   S
Sbjct: 375 ETKPSTYTEQLASATSAITNKAIAAKNVVASKLGY-----TGENGGGQSESPVKDETPRS 429

Query: 474 TTATGSAAEYGKRIAESLTEKLAPVYXXXXXXXXXXXXX----------XXXXXXQDKGV 523
            TA      YG+++A ++ EKL PVY                             ++KGV
Sbjct: 430 VTA------YGQKVAGTVAEKLTPVYEKVKETGSTVMTKLPLSGGGSGVKETQQGEEKGV 483

Query: 524 SVKDYLAEKVRPGEDDRALSEVISETLHM 552
           + K+Y++EK++PGE+D+ALSE+I+E LH 
Sbjct: 484 TAKNYISEKLKPGEEDKALSEMIAEKLHF 512


>AT5G52300.1 | Symbols: RD29B, LTI65 | CAP160 protein |
           chr5:21237205-21239404 FORWARD LENGTH=619
          Length = 619

 Score = 92.0 bits (227), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 58/149 (38%), Positives = 87/149 (58%), Gaps = 22/149 (14%)

Query: 415 ESSQGSYTEKISSATSAIADKAIGAKNTVASKLGFGESSESGENAL-RTQEEEKNEGFSS 473
           E+   +YTE+++SATSAI +KAI AKN VASKLG+     +GEN   +++   K+E   S
Sbjct: 376 ETKPSTYTEQLASATSAITNKAIAAKNVVASKLGY-----TGENGGGQSESPVKDETPRS 430

Query: 474 TTATGSAAEYGKRIAESLTEKLAPVYXXXXXXXXXXXXX----------XXXXXXQDKGV 523
            TA      YG+++A ++ EKL PVY                             ++KGV
Sbjct: 431 VTA------YGQKVAGTVAEKLTPVYEKVKETGSTVMTKLPLSGGGSGVKETQQGEEKGV 484

Query: 524 SVKDYLAEKVRPGEDDRALSEVISETLHM 552
           + K+Y++EK++PGE+D+ALSE+I+E LH 
Sbjct: 485 TAKNYISEKLKPGEEDKALSEMIAEKLHF 513


>AT4G25580.1 | Symbols:  | CAP160 protein | chr4:13056320-13058657
           FORWARD LENGTH=626
          Length = 626

 Score = 90.5 bits (223), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 95/293 (32%), Positives = 135/293 (46%), Gaps = 67/293 (22%)

Query: 412 EQNESSQGSYTEKISSATSAIADKAIGAKNTVASKLGFGESSESGENALRTQEEEKNEGF 471
           E ++ +Q SYT+KIS ATS +ADKA+ AKN VASKLG+     SGE       E + EG 
Sbjct: 377 EMHQPNQSSYTDKISLATSVVADKAVAAKNAVASKLGY-----SGEGG----HENRVEGA 427

Query: 472 SSTTATGSAAEYGKRIAESLTEKLAPVYXXXXXXXXXXXXX-----XXXXXXQDKGVSVK 526
            + +   SA  YG  +A  +T    PVY                        QD+GVS K
Sbjct: 428 ENPS---SAGGYGSTVASMVT----PVYEKVKETGASVMTKLPFTGTGTEQGQDRGVSAK 480

Query: 527 DYLAEKVRPGEDDRALSEVISETLHMKXXXXXXXXXXXXXXXXXXXSDAVHKRGDESEGR 586
           ++L EK+ PGE+D+ALSEV++E LH+                           G E+   
Sbjct: 481 EFLTEKLSPGEEDKALSEVVTEKLHLGGG------------------------GGETAPP 516

Query: 587 RRVPLGKVTESEEVKRRLGG---EDRETERRYEESYVNSPGEGVVDKVKGMVGSWF---- 639
           +R   G VT+SEEV++RLGG      E   +  E+Y      G+ +K++G V SW     
Sbjct: 517 KR---GIVTQSEEVEKRLGGFKDPSSEAATKQGEAYAEKGEGGIAEKLRGAVTSWIAGTT 573

Query: 640 -------TKPVDNQSSSQGDEV-----LSRKSGAEDKQFNQATGERRFQGSSN 680
                  T+ V + + S G  +     ++   G E  Q      ++RFQ S N
Sbjct: 574 EEVTQKSTESVQDSTQSLGSTIGNKMGITGSGGGEAGQQGSMPLQKRFQESGN 626