Miyakogusa Predicted Gene

Lj0g3v0200599.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0200599.1 Non Chatacterized Hit- tr|D8SN19|D8SN19_SELML
Putative uncharacterized protein OS=Selaginella moelle,52.53,1e-18,DNA
POLYMERASE I,NULL; 5_3_exonuc,5'-3' exonuclease, C-terminal domain; no
description,NULL; 5' to 3,CUFF.12725.1
         (155 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma16g27270.1                                                       285   2e-77
Glyma02g08200.1                                                       166   1e-41

>Glyma16g27270.1 
          Length = 320

 Score =  285 bits (728), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 132/155 (85%), Positives = 144/155 (92%)

Query: 1   MVMPLPDLQRWSFYTLRHYRDQYNCDPQSDLSLRCIVGDEVDGVPGIQHVVPSFGRKTAL 60
           +VMPLP+LQRWSFYTLRHYRDQYNCDP+SDLSLRCIVGDEVDGVPGIQH+VPSFGRKTAL
Sbjct: 166 IVMPLPELQRWSFYTLRHYRDQYNCDPESDLSLRCIVGDEVDGVPGIQHLVPSFGRKTAL 225

Query: 61  KLIKKHGSLETLLSAAEVRTVGRPYAQDALTKYADYLRRNYEVLALKMDVNVQLYEEWLV 120
           KLIKKHGSLETLL+AA +RTVGRPYAQDAL  +ADYLRRNYEVLALK DVNVQL EEWL+
Sbjct: 226 KLIKKHGSLETLLNAAAIRTVGRPYAQDALKNHADYLRRNYEVLALKRDVNVQLIEEWLI 285

Query: 121 ERDTQNDAIALSTFFKYLEESKELTYNNRPNLYNG 155
           +RD +ND IALS FFKYLEESKELT + RP+ YNG
Sbjct: 286 KRDNRNDKIALSAFFKYLEESKELTNSGRPSFYNG 320


>Glyma02g08200.1 
          Length = 189

 Score =  166 bits (419), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 84/112 (75%), Positives = 91/112 (81%), Gaps = 7/112 (6%)

Query: 33  LRCIVGDEVDGVPGIQHVVPSFGRKTALKLIKKHGSLETLLSAAEVRTVGRPYAQDALTK 92
           L CIVGDEVDGVPGIQH+VPSFGRKTALKLIKKHGSLETLL+AA +RTVGRPYA DAL  
Sbjct: 81  LGCIVGDEVDGVPGIQHLVPSFGRKTALKLIKKHGSLETLLNAAAIRTVGRPYAHDALKN 140

Query: 93  YADYLRRNYEVLALKMDVNVQLYEEWLVERDTQNDAIALSTFFKYLEESKEL 144
           +A Y     E++    DVNVQL E WLV+RD  ND IALS FFKYLEESKEL
Sbjct: 141 HATY----GEIMK---DVNVQLIEGWLVKRDNHNDKIALSAFFKYLEESKEL 185